NO16G02490.1, NO16G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02490.1
Unique NameNO16G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1315
Alignment locationchr16:719177..720775 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:719177..720775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G02490.1 vs.
Match: XP_005855091.1 (acyl-coenzyme a binding domain containing 6 [Nannochloropsis gaditana CCMP526]; EKU21275.1 acyl-coenzyme a binding domain containing 6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 214.2 bits (544), Expect = 5.500e-52
Identity = 126/280 (45.00%), Postives = 164/280 (58.57%), Query Frame = 0 
Query:   13 LFAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATEGDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWY-------GDGAASGMKDT--AQRDGAGRNLGRKD--DDNFSFGSSQLRALGEIGID----GCIVRRERRKGEERGKEGEEEEEGEEAQDVFYYVKRGMVEEVLARLEKGERE-------GEPRVDIDVRDEEGRTLLHWAVDRNHRVLVELLLTRGSDMTAEDAEGETPLDYARLCEHDALVEILVNLEKAPGARKS 271
            LF  CA++V+ PP    HV LTE Q+L LYA +KQ  EGDN T CP LLD V RAKW AW+A+ G+    AQ+ Y+ C+Q W+       G  A+ G+K T    R  + R+    +  DD    GS+  R +G IG +    GC+   +R   E   +EG +     E +D+F + K G V++VLA L+ GE E       G     +D RDEEGRTLLHWAVD NH  LV++LL RG+D+TA D EG+T LDYARLCEH  LVE+LV  E     RK+
Sbjct:   12 LFFQCASIVKSPPPEFSHVTLTEKQQLHLYARYKQGYEGDNVTPCPGLLDFVARAKWKAWKALMGMDALQAQSEYIDCVQAWFKEQSPEMGCHASEGLKQTKITSRFQSHRDSRANEHVDDTLLLGSAPFRGIGVIGREGLNSGCVDSPDRTSEE---REGNKRGAANEHEDIFSWAKEGFVDKVLAWLD-GENEPAEGGAIGPLPRHVDTRDEEGRTLLHWAVDGNHGALVKILLARGADVTATDKEGDTCLDYARLCEHKELVELLVEREAITQDRKT 287
The following BLAST results are available for this feature:
BLAST of NO16G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855091.15.500e-5245.00acyl-coenzyme a binding domain containing 6 [Nanno... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02490NO16G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02490.1NO16G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02490.1.cds1NO16G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02490.1.cds2NO16G02490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02490.1.cds3NO16G02490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02490.1 ID=NO16G02490.1|Name=NO16G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
GTCGTTACGAAGAAGCTCGCCTGTGGTGGAGGTCAGGGAGGGTGTTGAGA
TTGAGTATTAATAGTAGAAGCATAAAGACTCCAGGAGTCAAACTAAGCAC
ATAGACGGCCCAACAGATTTCGTAACCTGGTTTATATGGTAGGTTTAAGG
AGGATGCCCGAGTGTCTAAGTGACCAGGGACAGGGCATTGCCGTCCTGCA
GTCCTCCCACCATCAAATCCCTTCTCCTCGACTCGACTCGCCTCGCGGAA
TGACACAAGCGGGTGCCAGCAAAAGTATCGGTAATAATTTAACAAGTCGA
AAGAGGTGGGCCTTCAGCCAAAGAGAAGTACACCCGACAGGATAAAGCAA
ACCAATCAGCCATGCGCGCTCTTGTCACCAACCCACAACCCACACACAGC
ACATGGACGGAGCGGATAACAAGATCAATGCCACCATGCTCTTCGCTCAC
TGTGCCGCCTTGGTTCGACAACCGCCCACAAGCCTGGGCCATGTCCGATT
GACGGAAGACCAGAAGCTGAAGCTCTATGCGTTGTTTAAACAGGCCACTG
AGGGAGATAATGCAACGACGTGTCCGAGTTTGTTGGACATTGTGGGGCGG
GCAAAATGGAATGCATGGCAAGCAATGGCAGGAATTTCACACGCCGATGC
TCAAGCACGCTACGTAGCTTGCATCCAGGAGTGGTACGGCGACGGCGCAG
CCTCGGGCATGAAGGACACAGCGCAGCGCGACGGCGCGGGTAGAAATTTG
GGCCGTAAGGACGACGACAATTTCTCGTTTGGCAGCAGCCAGTTGCGTGC
CTTGGGGGAGATTGGGATCGATGGTTGCATCGTCCGCAGGGAAAGGAGGA
AAGGGGAAGAAAGAGGGAAAGAGGGAGAAGAGGAAGAGGAAGGAGAGGAG
GCACAGGACGTTTTTTACTATGTCAAGCGTGGGATGGTTGAGGAGGTGTT
GGCACGACTTGAGAAAGGAGAGCGAGAGGGAGAACCACGGGTGGATATAG
ATGTTAGAGACGAGGAAGGCCGAACATTGCTGCATTGGGCCGTGGACAGA
AATCATCGAGTCCTAGTAGAATTGCTGCTGACAAGAGGATCGGATATGAC
GGCCGAGGATGCAGAGGGAGAAACGCCTCTGGATTATGCGCGGCTATGTG
AGCACGATGCACTTGTGGAAATTTTGGTCAATTTAGAGAAGGCGCCCGGG
GCAAGGAAGAGCGTTGGTTTGGAGAGCACACAGGAAGCAAGTAAAGGGAA
GGAAAGAGCAGCAAAAGGATGACTGGAATGAGATGTAAAGCGAAATAAGA
CCCTAATGGAAAAAA
back to top

protein sequence of NO16G02490.1

>NO16G02490.1-protein ID=NO16G02490.1-protein|Name=NO16G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MDGADNKINATMLFAHCAALVRQPPTSLGHVRLTEDQKLKLYALFKQATE
GDNATTCPSLLDIVGRAKWNAWQAMAGISHADAQARYVACIQEWYGDGAA
SGMKDTAQRDGAGRNLGRKDDDNFSFGSSQLRALGEIGIDGCIVRRERRK
GEERGKEGEEEEEGEEAQDVFYYVKRGMVEEVLARLEKGEREGEPRVDID
VRDEEGRTLLHWAVDRNHRVLVELLLTRGSDMTAEDAEGETPLDYARLCE
HDALVEILVNLEKAPGARKSVGLESTQEASKGKERAAKG*
back to top

mRNA from alignment at chr16:719177..720775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02490.1 ID=NO16G02490.1|Name=NO16G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at chr16:719177..720775- (Nannochloropsis oceanica)
GTCGTTACGAAGAAGCTCGCCTGTGGTGGAGGTCAGGGAGGGTGTTGAGA
TTGAGTATTAATAGTAGAAGCATAAAGACTCCAGGAGTCAAACTAAGCAC
ATAGACGGCCCAACAGATTTCGTAACCTGGTTTATATGGTAGGTTTAAGG
AGGATGCCCGAGTGTCTAAGTGACCAGGGACAGGGCATTGCCGTCCTGCA
GTCCTCCCACCATCAAATCCCTTCTCCTCGACTCGACTCGCCTCGCGGAA
TGACACAAGCGGGTGCCAGCAAAAGTATCGGTAATAATTTAACAAGTCGA
AAGAGGTGGGCCTTCAGCCAAAGAGAAGTACACCCGACAGGATAAAGCAA
ACCAATCAGCCATGCGCGCTCTTGTCACCAACCCACAACCCACACACAGC
ACATGGACGGAGCGGATAACAAGATCAATGCCACCATGGTACGTACAACG
CACGTGTGGCAACCTCCCCCCCCCTTCCTTTGCTAATCCCTTCCCTTCCT
TCCGTCATGCCTTCTTGCACCCTCTAATCATCCTACCCGCAGCTCTTCGC
TCACTGTGCCGCCTTGGTTCGACAACCGCCCACAAGCCTGGGCCATGTCC
GATTGACGGAAGACCAGAAGCTGAAGCTCTATGCGTTGTTTAAACAGGCC
ACTGAGGGAGATAATGCAACGACGTGTCCGAGTTTGTTGGACATTGTGGG
GCGGGCAAAATGGTACGTTTGTGGTAATGAGGGGGCTTCAAGAATAGGAC
AGTGGTGCCTGTGCGATAATGGGTTTAGAAGGTGATTGTGTTGCATCACG
CGTACTTGATTGTGATTTTTGGAGAGATAAGAGTAGCGAGGAAAATTATG
AAGAAAGAGGTTTTTAATAATAAAATTACGCCCACTCGATAGGAATGCAT
GGCAAGCAATGGCAGGAATTTCACACGCCGATGCTCAAGCACGCTACGTA
GCTTGCATCCAGGAGTGGTACGGCGACGGCGCAGCCTCGGGCATGAAGGA
CACAGCGCAGCGCGACGGCGCGGGTAGAAATTTGGGCCGTAAGGACGACG
ACAATTTCTCGTTTGGCAGCAGCCAGTTGCGTGCCTTGGGGGAGATTGGG
ATCGATGGTTGCATCGTCCGCAGGGAAAGGAGGAAAGGGGAAGAAAGAGG
GAAAGAGGGAGAAGAGGAAGAGGAAGGAGAGGAGGCACAGGACGTTTTTT
ACTATGTCAAGCGTGGGATGGTTGAGGAGGTGTTGGCACGACTTGAGAAA
GGAGAGCGAGAGGGAGAACCACGGGTGGATATAGATGTTAGAGACGAGGA
AGGCCGAACATTGCTGCATTGGGCCGTGGACAGAAATCATCGAGTCCTAG
TAGAATTGCTGCTGACAAGAGGATCGGATATGACGGCCGAGGATGCAGAG
GGAGAAACGCCTCTGGATTATGCGCGGCTATGTGAGCACGATGCACTTGT
GGAAATTTTGGTCAATTTAGAGAAGGCGCCCGGGGCAAGGAAGAGCGTTG
GTTTGGAGAGCACACAGGAAGCAAGTAAAGGGAAGGAAAGAGCAGCAAAA
GGATGACTGGAATGAGATGTAAAGCGAAATAAGACCCTAATGGAAAAAA
back to top

Coding sequence (CDS) from alignment at chr16:719177..720775-

>NO16G02490.1 ID=NO16G02490.1|Name=NO16G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr16:719177..720775- (Nannochloropsis oceanica)
ATGGACGGAGCGGATAACAAGATCAATGCCACCATGCTCTTCGCTCACTG
TGCCGCCTTGGTTCGACAACCGCCCACAAGCCTGGGCCATGTCCGATTGA
CGGAAGACCAGAAGCTGAAGCTCTATGCGTTGTTTAAACAGGCCACTGAG
GGAGATAATGCAACGACGTGTCCGAGTTTGTTGGACATTGTGGGGCGGGC
AAAATGGAATGCATGGCAAGCAATGGCAGGAATTTCACACGCCGATGCTC
AAGCACGCTACGTAGCTTGCATCCAGGAGTGGTACGGCGACGGCGCAGCC
TCGGGCATGAAGGACACAGCGCAGCGCGACGGCGCGGGTAGAAATTTGGG
CCGTAAGGACGACGACAATTTCTCGTTTGGCAGCAGCCAGTTGCGTGCCT
TGGGGGAGATTGGGATCGATGGTTGCATCGTCCGCAGGGAAAGGAGGAAA
GGGGAAGAAAGAGGGAAAGAGGGAGAAGAGGAAGAGGAAGGAGAGGAGGC
ACAGGACGTTTTTTACTATGTCAAGCGTGGGATGGTTGAGGAGGTGTTGG
CACGACTTGAGAAAGGAGAGCGAGAGGGAGAACCACGGGTGGATATAGAT
GTTAGAGACGAGGAAGGCCGAACATTGCTGCATTGGGCCGTGGACAGAAA
TCATCGAGTCCTAGTAGAATTGCTGCTGACAAGAGGATCGGATATGACGG
CCGAGGATGCAGAGGGAGAAACGCCTCTGGATTATGCGCGGCTATGTGAG
CACGATGCACTTGTGGAAATTTTGGTCAATTTAGAGAAGGCGCCCGGGGC
AAGGAAGAGCGTTGGTTTGGAGAGCACACAGGAAGCAAGTAAAGGGAAGG
AAAGAGCAGCAAAAGGATGA
back to top
Synonyms
Publications