NO16G02420, NO16G02420 (gene) Nannochloropsis oceanica

Overview
NameNO16G02420
Unique NameNO16G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2252
Alignment locationchr16:693398..695649 -

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Properties
Property NameValue
DescriptionRNA helicase, DEAD-box type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:693398..695649 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO16G02420 vs. NCBI_GenBank
Match: EWM23940.1 (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 813.9 bits (2101), Expect = 3.400e-232
Identity = 449/574 (78.22%), Postives = 480/574 (83.62%), Query Frame = 0
Query:    1 MTPHGEAFVQPSARHGGRGQPKQSHNR----XXXXXXXXXXXXXXXXXXXXXAPATSASNHLTDALFRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPPRPGSISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLTKAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGC-DQPPALLKKTVELEGEDAXXXXXXXXXXXXXXXXXXXXXVGLTGNEPRLRRMGAVGEAGGRAKKGPRG 570
            MT  G AFVQPS  H G+   K  H R      XXXXXXXXXXXXXXXXXXX      SNHLTDALFRDLPLS  TQRALAET+GFDRMT VQEAT+PL+LAGNDVMAKAKTGTGKTLAFCIPALEQLRQ PPR GSISVLVLSPTRELAQQIHVEASKLLTFQ  LKADLSYGGTNVN+ER RLL R PDILVATPGRL+DHLENNGLAP+FQDLR+LILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRP YKFIDTV  EE DTNIQVTQS+A+LPLDQHFA+LHTLL+KAKQDPAHK+IVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQA RTKTSDQFRVAKSGILFSSDVSARGVDY+GIT VVQMGVPSNREMY+HRLGRTGRAG+DG+G++VLTP+E+FFLR+LKDLP+  I  +ACQPDQAS+ A++RA  +VDERAVGAAYQAWLGFYNSVPGLKWSK RLVEEAN FA IMGC DQPPALLKKTV + G                         G  GN  R R      +AGGR  +   G
Sbjct:   31 MTSRGNAFVQPSP-HRGKHSSKHHHQRIVDQQHXXXXXXXXXXXXXXXXXXXXXXXXXSNHLTDALFRDLPLSDNTQRALAETLGFDRMTHVQEATMPLVLAGNDVMAKAKTGTGKTLAFCIPALEQLRQRPPRAGSISVLVLSPTRELAQQIHVEASKLLTFQKALKADLSYGGTNVNAERKRLLQRPPDILVATPGRLLDHLENNGLAPYFQDLRVLILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPGYKFIDTVGAEEQDTNIQVTQSAAILPLDQHFAYLHTLLSKAKQDPAHKVIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQATRTKTSDQFRVAKSGILFSSDVSARGVDYEGITHVVQMGVPSNREMYVHRLGRTGRAGRDGQGILVLTPDESFFLRDLKDLPVSMIPTQACQPDQASLEAVRRAIPSVDERAVGAAYQAWLGFYNSVPGLKWSKTRLVEEANAFALIMGCKDQPPALLKKTVGMMGLRGVPGLRIEGSLPGASGRNGGHAGG--GNNVRKRTPSVSSDAGGRRGRDTHG 601          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: PSC75805.1 (DEAD-box ATP-dependent RNA helicase 25-like [Micractinium conductrix])

HSP 1 Score: 527.3 bits (1357), Expect = 6.400e-146
Identity = 279/464 (60.13%), Postives = 352/464 (75.86%), Query Frame = 0
Query:   57 HLTDALFRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPPRP-GSISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLTK-AKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQP-DQASVAAIQRA-KGAVDERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGCDQPPALLKKTVELEG 517
            HL D  F  LPLS  +QRAL+ET+GF  +T+VQ+ATLP +L G DVMA+AKTGTGKT+AF IP++E L ++P +P G ISVLVLSPTRELA QIH EA  LLT  +  KA   YGGTN+NSERNR LS R D+LVATPGRL+DHLEN+GLA   Q +R L+LDEADQLL+MGFRPAIEK++GFLP  +RQTLLFSATMP+ V++VAGLA++  + FIDT+++E++ TN+QV QS A++P++Q FA +  +L + A + P HK+I FFTTARL  +   LM  AG+  +EIHSRKSQ+AR K S +FR A++ ILFSSDVSARGVDY  +T+V+Q+G+PS+RE YIHRLGRT RAG+ G GLI+L PEE  FLR+L+DLP   ++AE   P  Q   AAIQ A    + +R    AY AWLGFYNS  G+ W K  LVE+AN FAA+MG  QPPAL+KKT+ + G
Sbjct:   74 HLADTTFASLPLSPASQRALSETLGFTHLTEVQDATLPAVLDGGDVMARAKTGTGKTMAFLIPSIEALVRSPVKPGGGISVLVLSPTRELASQIHKEALALLT-HHPYKAMCVYGGTNINSERNR-LSGRCDVLVATPGRLIDHLENSGLAAKLQGIRTLVLDEADQLLEMGFRPAIEKVLGFLP-RSRQTLLFSATMPQSVQQVAGLALKKQHAFIDTIKEEDSATNVQVEQSYALIPMEQQFASIFAVLRRHAAETPDHKVIAFFTTARLTQFMAALMAAAGLPVLEIHSRKSQSAREKASKEFREARASILFSSDVSARGVDYPDVTMVLQVGIPSSREQYIHRLGRTARAGRAGRGLIMLMPEEQHFLRQLRDLP---LTAEPGVPVSQQETAAIQAALPRLMGDRLPDMAYAAWLGFYNSTKGMGWDKPTLVEQANRFAAVMGLSQPPALMKKTIGMMG 531          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: XP_005843752.1 (hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis] >EFN51650.1 hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis])

HSP 1 Score: 450.3 bits (1157), Expect = 9.900e-123
Identity = 252/485 (51.96%), Postives = 321/485 (66.19%), Query Frame = 0
Query:   52 TSASNHLTDALFRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPPRPGS-ISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQ------------------VTQSSAVLPLDQHFAFLHTLLTK-AKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGCDQPPALLKKTVELEG 517
            T  ++HLT   F  LPL+A +QR+L E + F+ +T VQEATLP +L G DVMA+AKTGTGKT+AF IPA+E L + PPR GS ISVLVLSPTRELA QI  EA  LL F +  KA + YGGTN+NSERNR L+ R D+LVATPGRL+DHLEN+GLA   Q +R L+LDEADQLL+MGFRPAIEKI+ FLP  +RQTLLFSATMP+ V++VAGLA++  + FIDT+ +E++ TN Q                  V QS A++P++  F  + ++L + A+  P HKII                                +AR K S +FR A S ILFSSDVSARGVDY  +T+V+Q+G+PS+RE YIHRLGRT RAG+ G GL++L PEE  F+R+L+DLP+         P    VAA++     V +R    AY AWLGFYNS  G+ WSK  LV++AN F+A+MG  QPP L KKT+ + G
Sbjct:   60 TGPTSHLTTTSFASLPLAAASQRSLTEVLRFEFLTSVQEATLPAVLNGGDVMARAKTGTGKTMAFLIPAVEALCRAPPRSGSGISVLVLSPTRELASQIAKEAEALLRF-HPYKAQVVYGGTNINSERNR-LAGRCDVLVATPGRLIDHLENSGLAATLQGIRTLVLDEADQLLEMGFRPAIEKILSFLPK-SRQTLLFSATMPQAVQQVAGLALKKQHAFIDTIGEEDSATNTQARLPAAPREAPRPLHSPRVEQSYALVPMEDQFTAIFSVLRRHAQTTPDHKII--------------------------------SARDKASKEFRTATSAILFSSDVSARGVDYPDVTMVLQVGIPSSREQYIHRLGRTARAGRAGVGLLILMPEEQHFMRQLRDLPLTAEPGVPTTPQ--DVAAVKAGLARVGDRLPDMAYAAWLGFYNSAKGMGWSKPELVQQANRFSAVMGLSQPPPLQKKTIGMMG 507          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: PRW59356.1 (DEAD box RNA helicase isoform B [Chlorella sorokiniana])

HSP 1 Score: 449.9 bits (1156), Expect = 1.300e-122
Identity = 236/408 (57.84%), Postives = 301/408 (73.77%), Query Frame = 0
Query:  114 LAFCIPALEQLRQTPPRPG-SISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLTK-AKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVD---ERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGCDQPPALLKKTVELEG 517
            + F +PA+E L + PPR G  ISVLVLSPTRELA QI  EA +LL F +  KA + YGGTN+NSERNR L  R D+LVATPGRL+DHLEN+GLA   Q +R L+LDEADQLL+MGFRPAIE+++ FLP   RQTLLFSATMP+ V++VAGLA++  + FIDT+ +E++ TN+QV QS A++P++Q FA ++ +L + A++ P HK+IVFFTTARL  Y   L+  AG+  +EIHSRKSQ+AR K S QFR A+S I+FSSDVSARGVDY  +TLV+Q+GVPS+RE YIHRLGRT RAG+ G G+++L PEE  FLR+L+DLP+         P     AA+Q A G V    +R    AY AWLGFYNS  G+ W K  LV++AN FA +MG  +PPALLKKT+ + G
Sbjct:    1 MGFLVPAIEALARAPPRQGDGISVLVLSPTRELASQIEKEAEQLLRF-HPFKAQVVYGGTNINSERNR-LGGRCDVLVATPGRLIDHLENSGLAQKLQHIRTLVLDEADQLLEMGFRPAIERVLSFLP-RDRQTLLFSATMPQAVQQVAGLALKQQHSFIDTIGEEDSATNVQVEQSYALIPMEQQFAAIYNVLRRHAEETPDHKVIVFFTTARLTQYMAALIDAAGLPVLEIHSRKSQSAREKASAQFRTARSAIMFSSDVSARGVDYPDVTLVLQIGVPSSREQYIHRLGRTARAGRTGRGVLLLMPEEQHFLRQLRDLPLAAEPGLPITPQDN--AAVQAALGRVSRDHDRLPDMAYAAWLGFYNSAKGMGWDKPTLVQQANRFAGVMGLSEPPALLKKTIGMMG 403          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: XP_002506868.1 (predicted protein [Micromonas commoda] >ACO68126.1 predicted protein [Micromonas commoda])

HSP 1 Score: 448.0 bits (1151), Expect = 4.900e-122
Identity = 242/448 (54.02%), Postives = 310/448 (69.20%), Query Frame = 0
Query:   74 RALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPP-RPGSISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLT--KAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNSVPG-LKWSKARLVEEANTFA-AIMGCDQPPALLKKTVELEG 517
            RA+ E  G+   T VQ+ TLP IL G DV+A+AKTG+GKT+AF +P++E L ++P  R G +SVLVLSPTRELA QIH E+ KLL F + LK+ + +GGTN+ SER+R+ S+R D LVATPGRL+DH E +GL P  Q+L++L+LDEADQLL+MGF+P+I+KI+GF+P   RQTLLFSAT+P  VK++A  A+RP Y ++D V +E++ TN QVTQ   + PLD H   L  L+   +A+    HK+I FF TAR      EL    G    EIHSRKSQ  RTK +D FR AK G++ SSDVSARG+DY  +TLVVQ+G+PS+RE YIHRLGRT RAGK GEGL++L P E FF R+LKDLPI    A     D   + A+  A   VD R    AY AWLGFYNS  G + W K RLV+E N +A  ++ C   P +LKKTV + G
Sbjct:    2 RAIDEVFGYTHATAVQDQTLPPILKGLDVLARAKTGSGKTIAFLVPSIETLLRSPAGRAGDVSVLVLSPTRELASQIHEESLKLLKF-HALKSQVVFGGTNIKSERSRMNSQRCDFLVATPGRLIDHFETSGLQPRCQNLKVLVLDEADQLLEMGFKPSIDKILGFIP-RQRQTLLFSATVPNQVKQIAANALRPGYAYVDCVGEEDSATNTQVTQWLTMAPLDDHLPLLVQLVNMHQAQNPVEHKVICFFPTARATQLAAELFQALGKPVTEIHSRKSQGHRTKAADAFREAKCGVMMSSDVSARGLDYPDVTLVVQVGLPSSREQYIHRLGRTARAGKTGEGLLLLAPHEEFFTRQLKDLPITPAPASV---DPDVLNAVNNALRRVDVRTKEQAYVAWLGFYNSSTGKMGWDKKRLVDEGNRYALEVLQCPGLPGILKKTVGMMG 444          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: PRW59355.1 (DEAD box RNA helicase isoform A [Chlorella sorokiniana])

HSP 1 Score: 438.7 bits (1127), Expect = 3.000e-119
Identity = 237/439 (53.99%), Postives = 302/439 (68.79%), Query Frame = 0
Query:  114 LAFCIPALEQLRQTPPRPG-SISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLS-------------------------------RRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLTK-AKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVD---ERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGCDQPPALLKKTVELEG 517
            + F +PA+E L + PPR G  ISVLVLSPTRELA QI  EA +LL F +  KA + YGGTN+NSERNRL S                                R D+LVATPGRL+DHLEN+GLA   Q +R L+LDEADQLL+MGFRPAIE+++ FLP   RQTLLFSATMP+ V++VAGLA++  + FIDT+ +E++ TN+QV QS A++P++Q FA ++ +L + A++ P HK+IVFFTTARL  Y   L+  AG+  +EIHSRKSQ+AR K S QFR A+S I+FSSDVSARGVDY  +TLV+Q+GVPS+RE YIHRLGRT RAG+ G G+++L PEE  FLR+L+DLP+         P     AA+Q A G V    +R    AY AWLGFYNS  G+ W K  LV++AN FA +MG  +PPALLKKT+ + G
Sbjct:    1 MGFLVPAIEALARAPPRQGDGISVLVLSPTRELASQIEKEAEQLLRF-HPFKAQVVYGGTNINSERNRLGSCIIERPFTHCLASPFPCPXXXXXXXXXXXXXXRCDVLVATPGRLIDHLENSGLAQKLQHIRTLVLDEADQLLEMGFRPAIERVLSFLP-RDRQTLLFSATMPQAVQQVAGLALKQQHSFIDTIGEEDSATNVQVEQSYALIPMEQQFAAIYNVLRRHAEETPDHKVIVFFTTARLTQYMAALIDAAGLPVLEIHSRKSQSAREKASAQFRTARSAIMFSSDVSARGVDYPDVTLVLQIGVPSSREQYIHRLGRTARAGRTGRGVLLLMPEEQHFLRQLRDLPLAAEPGLPITPQDN--AAVQAALGRVSRDHDRLPDMAYAAWLGFYNSAKGMGWDKPTLVQQANRFAGVMGLSEPPALLKKTIGMMG 435          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: GAQ83598.1 (DEAD-box RNA helicase family protein [Klebsormidium nitens])

HSP 1 Score: 435.3 bits (1118), Expect = 3.300e-118
Identity = 238/466 (51.07%), Postives = 322/466 (69.10%), Query Frame = 0
Query:   58 LTDALFRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPPRPGS---ISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAP-HFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPL-DQHFAFLHTLLTKAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNS-VPGLKWSKARLVEEANTFAA-IMGCDQPPALLKKTVELEG 517
            +T+  F    LS  T +AL E +G+++MT VQEATLP  L G DV+AKAKTGTGKTL F IPA+E++     R  S   I VLV+SPTRELAQQI  EA  LL + + L++++ +GG+N+NS+R RL S+  +IL+ TPGRL DHL+N    P   + L++LILDEAD LL+MGFRPAIEKI+ +LP   RQTLLFSAT+P  V  V+ LA++PN+ FIDTV +E   TNIQV QS AV+PL DQ  A  H L    +++   K++VF TTAR    Y +L    G  A+EIHSRKSQAART+TS++FR     +LF+SDVSARGVDY  +++V+Q+G+P+++  YIHRLGRT RAGK+GEG+++L P E +FL+++ DLP+        + D      +QR    ++E+ +  AY AWLGFYN+    L WSKA LV++AN +A   +G  +PPALL++TV + G
Sbjct:  269 ITETRFDSFNLSPPTIKALHEDLGYEKMTVVQEATLPACLDGKDVLAKAKTGTGKTLGFLIPAIERILARGGRRSSNPDIEVLVISPTRELAQQIEAEAKALLKY-HPLRSEIIFGGSNINSDRRRLESQPAEILICTPGRLQDHLDNTPSVPQRLKGLKVLILDEADNLLNMGFRPAIEKILRYLPGQ-RQTLLFSATIPPQVHTVSKLALKPNHAFIDTVGEETEQTNIQVKQSYAVIPLADQIGATFHILRQHIREERNFKVLVFLTTARATQLYAQLFQGIGFPALEIHSRKSQAARTRTSEEFRKGSRVVLFTSDVSARGVDYPDVSMVLQVGLPTDKAQYIHRLGRTARAGKEGEGILMLAPYEKYFLKQVADLPLEQYGPVPIEADIRQ--EVQRGMSRLEEKTLVQAYVAWLGFYNTFCKNLGWSKADLVQQANFYATECLGMSEPPALLRRTVGMMG 730          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: GAX73920.1 (hypothetical protein CEUSTIGMA_g1370.t1 [Chlamydomonas eustigma])

HSP 1 Score: 434.9 bits (1117), Expect = 4.300e-118
Identity = 232/464 (50.00%), Postives = 307/464 (66.16%), Query Frame = 0
Query:   53 SASNHLTDALFRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPPRPGSISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHL--ENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLP-SHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLL-TKAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMGCDQPPALLKKTV 513
            +A  H +D  F +L +S  T+RA+AE  G++  T+VQ  ++P+ L G DV+AKAKTGTGKT+AF +PA++ L + PP PG + +LVLSPTRELA QIH EA KL  F + +K  +  GGTN+N+E  ++ S+ P +L+ TPGR++DHL  E++ L    +DLR+LI DEAD LLDMGFRP I+KI+  LP    RQTLLFSAT PK V+++A  A R  YK +DTV  EE  TN+QV Q S V+P      +L  ++ T   QD   K+IVFF TAR    Y E   K G+   E+HSRKSQ  RT+ S++FR     I+FSSDVSARGVDY  ++LVVQ+G+P++R+ Y+HR+GRT RAGK GE L++L   EAFFL++LKDLPI  +        Q    AI RA   V       AY AWLGFY S PGL  +  ++VE AN F+ I+GC +PP L  KT+
Sbjct:  190 TALQHQSDTRFSELGISPVTKRAMAEVFGYEFCTKVQAQSIPVSLGGEDVLAKAKTGTGKTIAFMLPAIDNLLRRPPAPGQVGILVLSPTRELAMQIHTEAEKLAKFMD-MKVQVVIGGTNMNTESKKMDSKAPQVLIGTPGRVLDHLTNESSSLGRMVKDLRVLIFDEADNLLDMGFRPTIDKILAQLPGKETRQTLLFSATFPKDVQQLASYAFRKAYKTVDTV-GEETGTNVQVQQMSCVVPPKDLMTYLCAVIKTHMSQDRDFKVIVFFPTARQTQLYSETFDKMGLPIKEMHSRKSQGYRTRVSEEFRAGSGVIMFSSDVSARGVDYPDVSLVVQVGLPTDRDQYVHRVGRTARAGKTGESLLLLADFEAFFLKKLKDLPIRNMGELPEHLLQEHETAIARALSQVPYDTKSMAYAAWLGFYKSAPGLGLTSVQVVERANEFSQIIGCPEPPELEAKTI 651          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: XP_003057244.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH58889.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 429.5 bits (1103), Expect = 1.800e-116
Identity = 227/444 (51.13%), Postives = 302/444 (68.02%), Query Frame = 0
Query:   63 FRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTPPRP--GSISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFAFLHTLLT-KAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNSVPG-LKWSKARLVEEANTFA-AIMGC 502
            F  L LSA + RA++E M F   T VQ+ TLP I+ G D +A+AKTG+GKT+AF +P +E L +T P P  GS+S LVLSPTRELA QIH E+  LL F N  K+ + +GGTN+NSER R+   R D LVATPGRL+DH E +GL P   +L++L+LDEADQLL+MGF+PA+++I+ F+P   RQTLLFSAT+P+ V+ +A  A+RP Y ++D V +E++ TN+QV Q   + PLD H   L  L+    +Q+P HK++ FF TAR      EL    G    EIHSRKSQ  RTK +DQFR +K  ++ SSDV+ARG+D+  +TLV+Q+G+PS++E YIHRLGRT RAGK GEGL++L P E FF R+L+DLPI    A     D    +A+  A   VD R    AY AW+GFYN   G + W K +LV+EAN +A  ++GC
Sbjct:   98 FAALGLSAPSLRAISEVMKFTHATSVQDQTLPPIMKGLDTLARAKTGSGKTVAFLLPTIELLHRTGPAPGNGSVSCLVLSPTRELASQIHEESKSLLAFHN-FKSHVVFGGTNINSERGRMNGGRCDFLVATPGRLIDHFETSGLQPRCANLKVLVLDEADQLLEMGFKPAVDRILSFIP-RERQTLLFSATVPQQVRNIAANALRPGYAYVDCVGEEDSATNLQVKQWLTIAPLDDHLILLVQLINMHQQQEPNHKVMCFFPTARSTQLAAELFEALGKPVTEIHSRKSQGHRTKAADQFRASKCAVMMSSDVTARGMDFPDVTLVIQVGLPSSKEQYIHRLGRTARAGKTGEGLLLLAPHEEFFARQLRDLPITPAPATV---DGNIASAVANALARVDIRTKEQAYVAWMGFYNGSCGKMGWGKPQLVQEANRYALEVLGC 536          
BLAST of NO16G02420 vs. NCBI_GenBank
Match: XP_007510457.1 (predicted protein [Bathycoccus prasinos] >CCO17990.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 429.1 bits (1102), Expect = 2.400e-116
Identity = 232/458 (50.66%), Postives = 306/458 (66.81%), Query Frame = 0
Query:   63 FRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGNDVMAKAKTGTGKTLAFCIPALEQLRQTP-PRPGSISVLVLSPTRELAQQIHVEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHLENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFSATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFA-FLHTLLTKAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQAARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIHRLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVAAIQRAKGAVDERAVGAAYQAWLGFYNSVPG-LKWSKARLVEEANTFAA-IMGCDQPPALLKKTVELEG 517
            F  + LS  + RA+ E   F   T VQ+ TLP I  G DV+A+AKTG+GKT+ F +P++E L + P  R G +SVL++SPTRELA QIHVEA++LLTF ++  A + +GGTN+ +++ RL   R D LVATPGRL+DHLEN GL     +LR+L+LDEADQLL+MGFRP+IEKI+ +LP + RQTLLFSAT+P  VK++A  AM  N+ +ID V  E   TN QV Q   V     H A  L  +   A++ P HKI+ FF TAR  G   E+    GI+  EIHSRKSQ+ARTK +DQFR +KS ++ SSDV+ARG+D+  +T V+Q+G+PS+RE Y+HRLGRTGRAGK GEGL++L   E + LR +KDLP+    A     D  +   I RA   VD +    AY AW+GFYNS  G + WSK  LV  AN++A  ++GC   P +L KTV + G
Sbjct:    3 FASMGLSKQSMRAITEVCKFTHATAVQDQTLPHITKGVDVLARAKTGSGKTVGFTLPSIELLMKNPETRKGDVSVLIVSPTRELASQIHVEANQLLTF-HEYGAQVVFGGTNIGTDKKRLRENRCDFLVATPGRLIDHLENEGLRERMSNLRVLVLDEADQLLEMGFRPSIEKILSYLPRN-RQTLLFSATVPDAVKQIAANAMSDNHVYIDCVGDEATATNSQVAQWLTVADTKDHLALLLQVIEAHAREVPNHKIMCFFPTARATGLASEVFEAMGIKVFEIHSRKSQSARTKAADQFRASKSAVMMSSDVTARGMDFPDVTFVIQIGLPSSREQYVHRLGRTGRAGKTGEGLLILADFEKYILRSMKDLPLQVAEASV---DPNASDRINRALQKVDSKTKDQAYVAWMGFYNSSTGKIGWSKNDLVHAANSYAIDVLGCSGLPGVLAKTVGMMG 455          
The following BLAST results are available for this feature:
BLAST of NO16G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23940.13.400e-23278.22RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
PSC75805.16.400e-14660.13DEAD-box ATP-dependent RNA helicase 25-like [Micra... [more]
XP_005843752.19.900e-12351.96hypothetical protein CHLNCDRAFT_59143 [Chlorella v... [more]
PRW59356.11.300e-12257.84DEAD box RNA helicase isoform B [Chlorella sorokin... [more]
XP_002506868.14.900e-12254.02predicted protein [Micromonas commoda] >ACO68126.1... [more]
PRW59355.13.000e-11953.99DEAD box RNA helicase isoform A [Chlorella sorokin... [more]
GAQ83598.13.300e-11851.07DEAD-box RNA helicase family protein [Klebsormidiu... [more]
GAX73920.14.300e-11850.00hypothetical protein CEUSTIGMA_g1370.t1 [Chlamydom... [more]
XP_003057244.11.800e-11651.13predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_007510457.12.400e-11650.66predicted protein [Bathycoccus prasinos] >CCO17990... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003174NSK003174Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02420.1NO16G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631348gene_6137Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100082g22gene6528Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02420.1NO16G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02420 ID=NO16G02420|Name=NO16G02420|organism=Nannochloropsis oceanica|type=gene|length=2252bp
ATGACACCGCACGGAGAAGCCTTTGTTCAGCCATCCGCTCGCCACGGGGG
GCGGGGCCAGCCCAAGCAATCACACAACCGCCACCCCCATCCTCAGCAGC
ACCAGCAGCATCGTCAGCAGCACAACCAGGCAGCCATGCCTCCAGCCCCA
GCCACGAGCGCCTCCAACCATTTGACAGATGCATTGTTCCGTGACCTGCC
CTTGTCAGCCGGGACCCAGCGGGCGCTCGCCGAGACGATGGGATTTGACC
GCATGACCCAGGTCCAAGAAGCCACGCTGCCCTTGATTCTGGCGGGCAAT
GACGTGATGGCCAAGGCCAAGACAGGCACCGGTAAGACACTGGCTTTTTG
CATACCAGCCTTGGAACAGCTTCGGCAAACACCCCCGCGCCCGGGCAGCA
TTTCAGTGCTTGTTCTTTCGCCTACGCGGGAGCTGGCCCAGCAGATCCAT
GTAGAGGCGTCCAAGCTCCTGACATTCCAAAACAAGCTCAAAGCCGACCT
CAGCTACGGTGGCACAAACGTCAACTCGGAGCGCAATCGCCTCTTGAGCC
GGCGCCCGGATATTTTGGTAGCAACACCGGGTCGGTTGATGGACCACTTG
GAGAACAACGGTTTAGCGCCGCATTTCCAGGACCTGCGCATCCTCATCTT
GGACGAGGCGGACCAGCTGCTGGATATGGGTTTTCGCCCTGCCATAGAGA
AGATAATCGGTTTCCTACCTTCCCACGCCCGACAGACCCTTCTTTTCAGC
GCCACGATGCCGAAAGGTGTCAAGGAAGTCGCCGGCCTAGCCATGCGCCC
CAACTACAAATTTATCGATACCGTGGAGAAGGAGGAGGCTGACACGAACA
TTCAGGTGACGCAGTCGTCGGCTGTGTTGCCCTTGGACCAGCACTTCGCG
TTCTTGCACACCCTGCTGACCAAAGCCAAGCAAGATCCTGCCCACAAGAT
TATTGTTTTCTTTACGACGGCGCGCTTGGTGGGGTACTACTGCGAGCTGA
TGGGCAAAGCTGGCATCCAGGCCATGGAGATCCACTCCCGAAAATCGCAA
GCCGCCCGCACAAAAACCTCGGACCAATTCCGCGTCGCCAAGTCTGGCAT
CCTCTTCTCCTCTGACGTCAGTGCCCGTGGTGTGGACTACGATGGCATCA
CGCTTGTGGTGCAGATGGGCGTGCCCAGCAACCGCGAGATGTACATCCAC
CGCCTGGGCCGCACGGGCCGAGCGGGCAAGGACGGGGAGGGGCTCATCGT
GCTCACTCCGGAGGAGGCCTTCTTTCTCCGTGAACTCAAGGATCTTCCAA
TCGTCACCATCTCCGCCGAGGCCTGTCAGCCCGACCAGGCCAGCGTAGCT
GCCATCCAACGCGCCAAGGGGGCCGTGGACGAGCGGGCGGTCGGTGCGGC
CTACCAGGCGTGGTTGGGCTTCTACAACTCCGTGCCCGGCCTGAAGTGGA
GCAAGGCGCGCTTGGTAGAAGAAGCGAATACGTTTGCTGCCATCATGGGC
TGCGACCAGCCTCCGGCGTTGTTGAAGAAGACAgtaggtatgatgggctt
gcgcggcgtgcctggactcagggtcgaggcgagcattcccggcgtagGTG
GAGCTGGAGGGGGAGGACGCGGGAGAGGACGAGACGGTGGAGGAGGTGGT
ATTGGTGGTGGTGGCAGCTATGCTGGAGGCGATGGTGGGATTAACCGGAA
ACGAACCCCGCCTGCGTCGAATGGGGGCGGTGGGGGAGGCGGGGGGCCGA
GCCAAAAAAGGCCCCAGGGGCCTACCTCCTATGGCTTTCCCAGTGAGGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATAGTGGGCGAAGTGCGGG
CGGGGGGGGTCGTCCTCGCCCTGCCGGAGGAGGAAGAAGAGTTGGTGGTG
GTGGTGGTAGTGGTAGTGGACGACGTGGAGGTGGTGGCGGAGGGTGGTAA
TTGAACATTTTTCCCTCTCACCTTCCAGTATGCGGATGATTTAATGTTCT
GGGAGCTTAGAGTGTGCGTATCGGACGACGAAGAAACCAAGAGCTCTTTG
TAATGTCCGCAACATCCGAGGTAACGAATGACAAGACAGACGTGAAAGAA
CGAGCATAACAACATCCGCATAGAAGATTTGAAGACGAAGACTGCTGGAT
GACTTAAGAAACCTGTCTCCTACGCAAAGGTAAAGCAAACGAAAAAAGCT
TGTCCCACACTAACCGAAAGCAAAAGAAACAAGAAGATGCGTGAACAGCC
CA
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protein sequence of NO16G02420.1

>NO16G02420.1-protein ID=NO16G02420.1-protein|Name=NO16G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MTPHGEAFVQPSARHGGRGQPKQSHNRHPHPQQHQQHRQQHNQAAMPPAP
ATSASNHLTDALFRDLPLSAGTQRALAETMGFDRMTQVQEATLPLILAGN
DVMAKAKTGTGKTLAFCIPALEQLRQTPPRPGSISVLVLSPTRELAQQIH
VEASKLLTFQNKLKADLSYGGTNVNSERNRLLSRRPDILVATPGRLMDHL
ENNGLAPHFQDLRILILDEADQLLDMGFRPAIEKIIGFLPSHARQTLLFS
ATMPKGVKEVAGLAMRPNYKFIDTVEKEEADTNIQVTQSSAVLPLDQHFA
FLHTLLTKAKQDPAHKIIVFFTTARLVGYYCELMGKAGIQAMEIHSRKSQ
AARTKTSDQFRVAKSGILFSSDVSARGVDYDGITLVVQMGVPSNREMYIH
RLGRTGRAGKDGEGLIVLTPEEAFFLRELKDLPIVTISAEACQPDQASVA
AIQRAKGAVDERAVGAAYQAWLGFYNSVPGLKWSKARLVEEANTFAAIMG
CDQPPALLKKTVELEGEDAGEDETVEEVVLVVVAAMLEAMVGLTGNEPRL
RRMGAVGEAGGRAKKGPRGLPPMAFPVREEEEEEEEEEEIVGEVRAGGVV
LALPEEEEELVVVVVVVVDDVEVVAEGGN*
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Synonyms
Publications