NO16G02350, NO16G02350 (gene) Nannochloropsis oceanica

Overview
NameNO16G02350
Unique NameNO16G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3774
Alignment locationchr16:675295..679332 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit l
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:675295..679332 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR019382eIF3l
Homology
BLAST of NO16G02350 vs. NCBI_GenBank
Match: EWM23936.1 (eukaryotic translation initiation factor 3 subunit l [Nannochloropsis gaditana])

HSP 1 Score: 653.7 bits (1685), Expect = 4.600e-184
Identity = 365/420 (86.90%), Postives = 383/420 (91.19%), Query Frame = 0
Query:   29 MSGKFKAFVTRLHGAVRAERPNEERIHDVYQESEEVAKEFNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPATDYEAAVS 449
            MS KFK FVTRLHGAVRAERPNEERI +VYQESEEVAKEFN+DPWPKAE V++LVQ DRVFLLLYTEMAFQAFFKNKN+KATM DRVGSW+NYSALFTALIQDE G AMTEAA+AHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSA NE+ELQTVL+HKDVWTVDKVFNFLHQLVKVSKVREVLE A+LSKG  +GE    G   VPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQ+AL+VAEPVMEESRS +AGAGLLLSSSIIAQVSLHYHIGLSYLMIRKY EAIKTFVSVLDVYFK+MES+K  XXXXXXXXXXXXXXXXXXXXXXX          VDKVAAMLLIVHHLCPGQHIPENIRGHL GEKMKDKLR VQSGDVD IVTLFV+SAPKFISPATDY+AA S
Sbjct:    1 MSAKFKTFVTRLHGAVRAERPNEERIQEVYQESEEVAKEFNNDPWPKAEEVSALVQEDRVFLLLYTEMAFQAFFKNKNMKATMEDRVGSWQNYSALFTALIQDEAGDAMTEAARAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSAINESELQTVLDHKDVWTVDKVFNFLHQLVKVSKVREVLEVASLSKGSAEGE--GGGAGAVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQNALSVAEPVMEESRSVHAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYHEAIKTFVSVLDVYFKYMESVK--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDKVAAMLLIVHHLCPGQHIPENIRGHLTGEKMKDKLRHVQSGDVDEIVTLFVVSAPKFISPATDYDAAAS 416          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: CBJ32763.1 (Eukaryotic translation initiation factor 3 subunit l eukaryotic translation initiation factor eIF3 s [Ectocarpus siliculosus])

HSP 1 Score: 172.9 bits (437), Expect = 2.400e-39
Identity = 122/406 (30.05%), Postives = 196/406 (48.28%), Query Frame = 0
Query:   34 KAFVTRLHGAVRAERPNEERIHDVYQESEEVAKE--FNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFI 438
            K FV  LH A+R  +  +E +  +Y  + +   +  F    WP+AE +A+    D +FL  Y E+  +  F   NV+  M D + SWENY  LF AL+   D               +IT +WAFD+++EFVYQFQ  CQ +    +   +E EL+      D W V  V  +LH L+KVS +  +LE+                 A V +   PS+LH + GYFA+VG++RL+CLLGD+ + + V E +    ++       L + +++A V++H H GL++LM+++Y++A +    +L     H+                               D++   K  DK+ A++ I   L PG  I E ++   M +  +DKL ++  GD  A   LF  ++PKF+
Sbjct:   48 KDFVFDLHDAMRRAKRVDE-LEPLYNTTFKAVTDAYFKGSTWPEAEVIANQCSNDELFLCFYRELRNRHMFATTNVQ--MPDYLRSWENYCRLFDALLDCRD------------TNFVITEEWAFDLVHEFVYQFQSFCQMKGQR-RGGESEEELE------DAWAVQNVIGYLHGLIKVSNIMPILEAK------------KRPAANVAVPAAPSQLHQMAGYFAIVGMSRLQCLLGDYYECIKVLEAIDITDKNE------LFAGNMLAFVTVHQHAGLAFLMLKRYKDAAR----ILSEALVHVGRANRSGQLQRSGY----------------QDEVP--KTADKMMALMAIATSLAPGAKIDEQMQSK-MQDTHRDKLAKMAKGDDQAFRDLFSWASPKFV 390          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: ORY52201.1 (eukaryotic translation initiation factor 3 subunit 6 interacting protein-like protein [Neocallimastix californiae])

HSP 1 Score: 170.2 bits (430), Expect = 1.500e-38
Identity = 125/419 (29.83%), Postives = 206/419 (49.16%), Query Frame = 0
Query:   28 RMSGKFKAFVTRLHGAVRAERPNEERIHDVYQESEEV-----AKEFNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSK-LHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPA 441
            ++ G+ K F+   H  +      E   HD+ Q  E +      + + + PWP+A  +A LV  D +FL+LY E+ ++  +   N   T+ DR  S+ NY  LF  ++  E              ++ +  +W +DII EF+YQFQ  CQYR+     + NE EL+++ E  D+W V  V N L+ L++ S + E L    ++K G  G+ + + G       + SK L+ +LGYF+++GL R+ CLLGD+  AL   E V   +R+       +        V+ +Y++G +Y+M+R+Y +AIK F+SVL  Y   +++ K                              A  K  +++ A+L I   LCP   I E    +++ EK  ++L ++Q GD+     LF  + PKFI+PA
Sbjct:   46 KIPGEVKKFILNFHRIL-----VEHSYHDLGQIYEILFNRLTEQYYKNQPWPEAVVIAPLVNNDDLFLILYKELYYRHIYAKLN--PTINDRFNSYLNYCDLFNYILAPE-----------KPVDLELPNQWLWDIIDEFIYQFQSFCQYRSKV--KSKNEIELKSLRERPDIWNVHNVLNVLYSLIQKSNINEQL---FVNKNG--GDMMEAAG------EFGSKQLYKMLGYFSIIGLLRVHCLLGDYSLALKTMENVELHNRN-------IFIRVSACHVTTYYYVGFAYMMMRRYSDAIKIFISVLQ-YINRIKNFKTLSYQYE-----------------------ATAKKSEQMYALLAICITLCP-TGIDEATHSNMI-EKYGEQLNKMQKGDLKVFEELFTYACPKFINPA 400          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: ORX60915.1 (hypothetical protein BCR36DRAFT_578990 [Piromyces finnis])

HSP 1 Score: 168.7 bits (426), Expect = 4.500e-38
Identity = 124/419 (29.59%), Postives = 207/419 (49.40%), Query Frame = 0
Query:   28 RMSGKFKAFVTRLHGAVRAERPNEERIHDV-----YQESEEVAKEFNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSK-LHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPA 441
            ++  + K F+   H  +      E   HD+     Y  ++   + + +  WP+AE +A LV  D +FL+LY E+ ++  +    +  T+ DR  S+ NY  LF  ++  E              E+ +  +W +DII EF+YQFQ  CQYR+     + NE EL+++ E  D+W V  V N L+ L++ S + E L    ++K G  G+ + + G       + SK L+ +LGYF+++GL R+ CLLGD+  AL + E +   +R+      + L  S    V+ +Y++G +Y+M+R+Y +AIKTF S+L  Y   +++ K                              A  K  +++ A+L I   LCP   I E    +++ EK  + L ++Q GD+     LF  + PKFI+PA
Sbjct:   43 KIPNEVKKFILNFHKIL-----VEHTFHDLQNIYEYSYNKLTEQFYKNVQWPEAEVIAPLVNNDAIFLILYKELYYRHIY--AKLTPTINDRFNSYLNYCDLFNYILAPE-----------KPVELELPNQWLWDIIDEFIYQFQSFCQYRSKV--KSKNEIELKSLRERPDIWNVHNVLNVLYSLIQKSNINEQL---LVNKNG--GDMMEAAG------EFGSKQLYKMLGYFSIIGLLRVHCLLGDYSLALKMMENIELHTRN------IFLRVS-ACHVTTYYYLGFAYMMMRRYSDAIKTFTSILH-YINRIKNYKTLSYQYE-----------------------ATNKKSEQMYALLAICITLCP-TGIDEETHSNMV-EKYGEHLSKMQKGDLKVFEELFTYACPKFINPA 397          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: XP_020624167.1 (eukaryotic translation initiation factor 3 subunit L-like, partial [Orbicella faveolata])

HSP 1 Score: 167.5 bits (423), Expect = 1.000e-37
Identity = 120/378 (31.75%), Postives = 187/378 (49.47%), Query Frame = 0
Query:   66 KEFNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLV----TYPSKLHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISP 440
            + F   PWP A+ VASLV GD+VFL+LY E+ ++  +    +K T+  R  S+ NY  LF  ++  ++   ++           +  +W +DII EF+YQFQ   QYR+  L+    E E+ T+  +  +W V  V N L+ LV+ SK+   L            E  N GG P  +      +P  L+ +LGYF+L+GL RL  LLGD+  A+ V E V    +S       L S     Q++ +Y++G +YLM+++YQ+AI++F ++L +Y +  +++                                  K  D++  +L I   LCP Q I EN+   L  EK  D+L+++Q GDV      F  + PKFISP
Sbjct:   19 RHFEKSPWPDADYVASLVDGDQVFLILYKELYYRHIY--NKLKPTLDHRFESYFNYCDLFNYILNTDEPVPLS-----------LPNQWLWDIIDEFIYQFQSFSQYRSKLLKK--GEDEVGTLRANTKIWNVHSVLNVLYSLVEKSKINHQL------------EVYNQGGDPDSVAGEFGIHP--LYKMLGYFSLIGLLRLHSLLGDYFQAIKVLENVELNKKS-------LYSRVPACQITTYYYVGFAYLMMKRYQDAIRSFSNIL-LYIQRTKNMFQTKSYQYEQIM----------------------KKNDQMYTLLAICLTLCP-QRIDENVHSQLR-EKCGDRLQRLQRGDVQTFEEAFSYACPKFISP 335          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: ORY63761.1 (hypothetical protein LY90DRAFT_505212 [Neocallimastix californiae])

HSP 1 Score: 167.5 bits (423), Expect = 1.000e-37
Identity = 122/396 (30.81%), Postives = 196/396 (49.49%), Query Frame = 0
Query:   51 EERIHD---VYQESEEVAKE--FNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSK-LHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPA 441
            E   HD   +Y+ S     E  + + PWP+A  +A LV  D +FL+LY E+ ++  +   N   T+ DR  S+ NY  LF  ++  E              ++ +  +W +DII EF+YQFQ  CQYR+     + NE EL+++ E  D+W V  V N L+ L++ S + E L    ++K G  G+ + + G       + SK L+ +LGYF+++GL R+ CLLGD+  AL   E V   +R+                V+ +Y++G +Y+M+R+Y +AIK F+SVL  Y   +++ K                              A  K  +++ A+L I   LCP   I E    +++ EK  ++L ++Q GD+     LF  + PKFI+PA
Sbjct:   65 EHTYHDLGQIYEVSYNKLTEQYYKNQPWPEALVIAPLVNNDVLFLVLYKELYYRHIYAKLN--PTINDRFNSYLNYCDLFNYILAPE-----------KPVDLELPNQWLWDIIDEFIYQFQSFCQYRSKV--KSKNEVELKSLRERPDIWNVHNVLNVLYSLIQKSNINEQL---LVNKNG--GDMMEAAG------EFGSKQLYKMLGYFSIIGLLRVHCLLGDYSLALKTMENVELHNRN-------FFIRVSACHVTTYYYVGFAYMMMRRYSDAIKIFISVLQ-YINRIKNYKTLSYQYE-----------------------ATAKKSEQMYALLAICITLCP-TGIDEATHSNMI-EKYSEQLSKMQKGDLKVFEELFTYACPKFINPA 401          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: XP_009513941.1 (hypothetical protein PHYSODRAFT_551923 [Phytophthora sojae] >EGZ26666.1 hypothetical protein PHYSODRAFT_551923 [Phytophthora sojae])

HSP 1 Score: 167.2 bits (422), Expect = 1.300e-37
Identity = 121/380 (31.84%), Postives = 177/380 (46.58%), Query Frame = 0
Query:   68 FNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGA---GLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPATDYE 445
            F    WP+  AV SLV  D  FLLLY ++ F+  F    ++  M  +V SWE Y A+F  ++   DG    EA         +  +W FDI+ EFVYQ+Q  CQYRA    +   EAE+ +  E+  +W   KV  +LH LV+ SK+ E+L+                 GA       PSK+   LGYF+L+ L R   L GD+  +L + EP+   ++S    A     +   S    VS+ YH+G + LM+  +  AI++F +++    ++                               AD     KL +K  A++ I   LCPGQ + + I   L+ EK  DK  ++Q GD+ A+  LF  S PKFI PA   E
Sbjct:   53 FKQASWPEPSAVESLVDEDPTFLLLYKQIYFRHLF--SRLQPGMDMKVASWETYVAIFDGVL---DGSLELEA---------LPSQWVFDIVGEFVYQYQTYCQYRAKV--ATKGEAEIASYQENLFIWDTSKVLGYLHALVRHSKIVEILK--------------EEEGAQA-----PSKVVKELGYFSLITLARAHVLFGDYYTSLKLLEPIDLANKSARGDAKTTAQIYEKSPGCHVSVFYHMGFAQLMLEDFAAAIRSFSTIILQVNRNRNYYSRF------------------------ADYEQLHKLTEKAMALVAIALFLCPGQRVNDQIHS-LIREKYGDKQSKLQKGDISALSELFGFSCPKFILPAVAVE 372          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: OUM65397.1 (hypothetical protein PIROE2DRAFT_53764 [Piromyces sp. E2])

HSP 1 Score: 166.0 bits (419), Expect = 2.900e-37
Identity = 123/419 (29.36%), Postives = 207/419 (49.40%), Query Frame = 0
Query:   28 RMSGKFKAFVTRLHGAVRAERPNEERIHDV-----YQESEEVAKEFNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSK-LHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPA 441
            ++  + K F+   H  +      E   HD+     Y  ++   + + + PWP+AE +A LV  D +FL+LY E+ ++  +    +  T+  R  S+ NY  LF  ++  E              E+ +  +W +DII EF+YQFQ  CQYR+     + NE EL+++ E  D+W V  V N L+ L++ S + E L    ++K G  G+ + + G       + SK L+ +LGYF+++GL R+ CLLGD+  AL + E +   +R+      + L  S    V+ +Y++G +Y+M+R+Y +AIK F S+L  Y   +++ K                              A  K  +++ A+L I   LCP   I E    +++ EK  ++L ++Q GD+     LF  + PKFI+PA
Sbjct:   48 KIPNEVKKFILNFHKIL-----VEHTYHDLQNIYEYTYNKLTEQFYKNIPWPEAEVIAPLVNNDVLFLILYKELYYRHIY--ARLTPTINHRFNSYLNYCDLFNFILAPE-----------KPVELELPNQWLWDIIDEFIYQFQSFCQYRSKV--KSKNEIELKSLRERPDIWNVHNVLNVLYSLIQKSNINEQL---LVNKNG--GDMMEAAG------EFGSKQLYKMLGYFSIIGLLRVHCLLGDYSLALKMMENIELHNRN------IFLRVS-ACHVTTYYYVGFAYMMMRRYSDAIKVFTSILH-YINRIKNYKTLSYQYE-----------------------ATNKKSEQMYALLAICITLCP-TGIDEETHSNMI-EKYGEQLSKMQKGDLKVFEELFTYACPKFINPA 402          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: ETK87591.1 (hypothetical protein L915_07997 [Phytophthora parasitica])

HSP 1 Score: 164.9 bits (416), Expect = 6.500e-37
Identity = 118/380 (31.05%), Postives = 175/380 (46.05%), Query Frame = 0
Query:   68 FNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQDALAVAEPV---MEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPATDYE 445
            F    WP+  AV SLV  D  FLLLY ++ F+  F    ++  M  +V SWE Y A+F  ++   DG    EA         +  +W FDI+ EFVYQ+Q  CQ+RA    +   E E+ +  E+  +W   KV  +LH LV+ SK+ E+L+    +K                    PS++   LGYF+L+ L R   L GD+  +L + EP+    + SR        +   S    VS+ YH+G + LM+  +  AI++F +++    ++                               AD     KL +K  A+L I   LCPGQ + + I   L+ EK  DK  ++Q GD+ A+  LF  S PKFI PA   E
Sbjct:   53 FKQASWPEPSAVESLVDEDPTFLLLYKQIYFRHLF--SRLQPGMDMKVASWETYVAIFDGIL---DGSLELEA---------LPSQWVFDIVGEFVYQYQSYCQFRAKV--ATKGEQEIASYTENLFIWDTSKVLGYLHALVRHSKIVEILKEEEGAKA-------------------PSEVVKELGYFSLITLARAHVLFGDYYTSLKLLEPIDLFNKSSRGEVKTTAQIHEKSPGCHVSVFYHMGFAQLMLEDFAAAIRSFSTIILQVNRNRNYYSRF------------------------ADYEQLHKLTEKAMALLAIALFLCPGQRVNDQIHS-LIREKYGDKQSKLQKGDISALTELFGFSCPKFILPAVAVE 372          
BLAST of NO16G02350 vs. NCBI_GenBank
Match: XP_017236870.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Daucus carota subsp. sativus] >KZN06870.1 hypothetical protein DCAR_007707 [Daucus carota subsp. sativus])

HSP 1 Score: 164.9 bits (416), Expect = 6.500e-37
Identity = 130/422 (30.81%), Postives = 198/422 (46.92%), Query Frame = 0
Query:   34 KAFVTRLHGAVRAERPNEERIHDVYQESEEVAKE--FNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHG-AEVMITGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFK----HMESIKXXXXXXXXXXXXXXXXXXXXXXXXXNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQVQSGDVDAIV---TLFVLSAPKFISP-ATDYE 445
            K+FV  L+  +R +  N   IH +Y+ S +   E  F   PWP  +AVA  V  D VF LLY EM F+  +    +  T+  R+ SW+NY +LF  ++              HG   + +  +W +D++ EFVYQFQ  CQYRA        EAE+  + +    W V  V NFL  LV+ S + ++LE     K GL+  T N G       T  S +  +LGYF++VGL R+ CLLGD+   L   +P+ + S+ G      + +  I + ++  YH G + LM+R+Y EAI+ F  +L   +K    H +S +                                 K  +++ A+L +   LCP   + E      + EK  +K+ ++Q  D +A      LF  + PKFI+P A  YE
Sbjct:   28 KSFVVHLYRHIREK--NVYEIHQMYETSFQTLSERLFKDTPWPSVDAVAQYVDNDHVFCLLYREMWFRHLY--ARLSPTLKQRIDSWDNYCSLFQVVL--------------HGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAK--MKNKTEAEIALLKQFDQAWNVYGVLNFLQALVEKSTIIQILEQ---EKEGLEQFTANDGYD----YTGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCIQPI-DISQQG------VFTIVIGSHIATIYHYGFANLMLRRYVEAIREFNKILLYIYKTKQYHQKSPQYEQIL----------------------------KKNEQMYALLAVSLSLCPQLKLVEETVNSQLREKYGEKMLRMQRYDDEAFALYDELFSYACPKFITPSAPTYE 387          
The following BLAST results are available for this feature:
BLAST of NO16G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23936.14.600e-18486.90eukaryotic translation initiation factor 3 subunit... [more]
CBJ32763.12.400e-3930.05Eukaryotic translation initiation factor 3 subunit... [more]
ORY52201.11.500e-3829.83eukaryotic translation initiation factor 3 subunit... [more]
ORX60915.14.500e-3829.59hypothetical protein BCR36DRAFT_578990 [Piromyces ... [more]
XP_020624167.11.000e-3731.75eukaryotic translation initiation factor 3 subunit... [more]
ORY63761.11.000e-3730.81hypothetical protein LY90DRAFT_505212 [Neocallimas... [more]
XP_009513941.11.300e-3731.84hypothetical protein PHYSODRAFT_551923 [Phytophtho... [more]
OUM65397.12.900e-3729.36hypothetical protein PIROE2DRAFT_53764 [Piromyces ... [more]
ETK87591.16.500e-3731.05hypothetical protein L915_07997 [Phytophthora para... [more]
XP_017236870.16.500e-3730.81PREDICTED: eukaryotic translation initiation facto... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003184NSK003184Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02350.1NO16G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G02350.2NO16G02350.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82445gene_6130Nannochloropsis oceanica (N. oceanica CCMP1779)gene
eIF3lgene6535Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02350.1NO16G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G02350.2NO16G02350.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02350 ID=NO16G02350|Name=NO16G02350|organism=Nannochloropsis oceanica|type=gene|length=3774bp
TGGACGTTTGTATTTTACTTCTTGTTGTTCTTTTCTTGGTTTCAAATTCC
GCCGGCTGATTTTTCCTTTCTTGAAAAGAGAAGTTCTCATAGTCTCTGTG
TATGAGTTACATTTGGCATATATATATATATAAGTCTCTGTGTATGAGTT
ACATTTGGCATATTTCTACTTCCCCTTGATTTTACTTTGGCGGTAATTTT
AATTTTCCCGCCCAACGTTAACCATCTTATTTTCTATGGCTGTGTCGGCG
AACAATTTTTTCCAGATCACTTTTGCCCAGCTTTTAGCTTCCTCCCAGAA
ATGAAGGAGGACGACTGAGACAGGCACGCGCTCGTCGGGCGTCAAACATT
CTAGAGAGGAACGCCTCTGTAATGATGGGATATGTTGCTGGTTACGGTAA
GAATCTGCTGAGTGAATTCGCGCTGTGACCAACTCAAGGTCGTTTGGTCG
TGACCCTGGTCGGGCTTCTCTCTCTATCCTTTTATGCCGGTTTGCTTGTA
GATTTTTTTGTGCATCTCCTTTTGATAGATAGGGTCACTCACAACATACT
TAAGAGTGCTAGATAAAAAGTGAAATGAAAAATAGGGTACAGTCTGGATG
CTGCTACCGTTACGACTACTACTACTGCTGCTGCTAAATTGATGGAACAA
GATATTGCTCGTATATTTTAAAAGCAAAAACCGCTGGTAGGGCCTGTCAC
CGCTACGACGACCAGACCACTAGAAAGGCCCTGGCGCCGACGACCAAACT
GTACGACTTGCTCCACGCGAGCCCGACACAGTGGGCACTCACCAGACCGT
CTATACACGTCACAGGCACACCAAAAACAAGTTCCACCGTGCTCAGGTCA
TCATCACAGCGTCCTGCTCTCGCTCATAACGCACAAAACAGAGACTCCGT
TCATCCCCTTTCTCTCCACATCCAATGGCAGCAGCAGTAGTGTTGGGCGC
GTAACTCCTTGGCAGGCAAATATAGCGAGTATCTGGGGATACAAGCTCGC
CTACATTGCGCATTTGATCCGTTTGGGTGCGAGCGCTGCTCTTTGGTCAA
TCTACCACCCTGCCAACCTGCCTGTCACCTTGCTTAGGGACGTACATAGT
GTTTTCAGGCCCTGTGATGCAGATGGGTTTGGTGGCCGGAAGAACGGGGG
AGGGAGGAGGACGATGAGCTCGATTTGTCAGGCCTTTGGGACAGGTACAT
CTTCGTACAAGGAGTGGAACCCGCACGGGGGATGAAGATGCCACAACATA
TGCCGCAGTTGAGCGAGCGTAACGTGATGAAGAGGAAGGGAAGAGCCAGG
AGGAAGTAAAACTGTGCTTGTTGGCTCCTCTTGATGACAAACCCTTGTTG
ATGTGTCCTGACGTGTTGCGGCAACTATGTGTCCTCACGTGTTGTGGTAA
CACCTTTTTTCGCAGGGAGGAACGATGGCAGTAATGCGACGGACGCGTTT
GCAAGCCGCCACCAGGGCGCGCGACAAACACTCCCGAGCGGAGTGACGGG
GCGCTTTCTTCGCCGCCTGCTAGCCACCCTTGCTTTCCTCCTGTCCTTCA
CATTCCATGACACGGCATGCTCATATCTTCCTTTTCCCACCCCAACCATA
CCACAGCGCCATCGTCATCGTGGTATCTAGGGCCCGCAGCGGCAGCCAGA
ATGAGTGGTAAATTCAAGGCAAGTGAAGTGATGGTTTGGTTGAGGGAGGT
GGTTAGTGGGCAATAAAGGTGTGGGTTGAGTACGCGTGCCTGTTACTGGT
CTTTAACGATATCATCATTCCATGAGAGAGTATGTGGATGGACGAGAATC
ATTAGAGAAGGGCTACTAATGTTAGGTTGTCGCTATACCGCGTGTGGCGG
CGCAGTGGCATGATGATGAAATGTGATGATGGAGGGCTCCCCGATGACTG
GCCTGGTTCTTGTTGCACTCCTGAGAGCCCTACGCCTTGATGTCACAATT
ACAGCCAGTAAGGGTGAGGAGAATAGAAAAGgcgcgtatcatcgcttgga
actgccttgtcgtctgacctttgaccttttcatctagccacgccccatac
aaccgcattttaacatggaacaacccttatcctcttccctctctccacgc
acagGCGTTTGTAACCCGCCTCCATGGCGCGGTCCGGGCGGAGCGTCCGA
ATGAAGAGCGGATCCACGATGTGTACCAAGAGTCAGAGGAAGTGGCCAAG
GAGTTTAACAGCGACCCGTGGCCCAAGGCCGAGGCGGTGGCAAGCCTTGT
TCAGGGAGATAGAGTCTTCCTTTTGCTTTACACGGAGATGGCGTTTCAAG
CATTTTTTAAGAATAAGAATGTGAAGGCTACCATGGGTGACCGTGTGGGG
TCCTGGGAGAATTACAGCGCGCTCTTCACGGCGCTGATCCAAGACGAGGA
TGGACAGGCCATGACGGAGGCAGCGAAGGCGCATGGGGCTGAAGTGATGA
TTACTGGCAAGTGGGCTTTTGACATCATTTATGAGTTTGTATATCAATTT
CAGGAGGCCTGCCAATACCGCGCTTCCGCCCTTCAGAGCGCCACAAATGA
GGCCGAGCTCCAGACGGTGCTGGAGCACAAGGACGTGTGGACCGTGGACA
AGGTGTTCAATTTCCTCCACCAGCTTGTCAAGGTCTCTAAGGTACGAGAG
GTCCTGGAATCCGCGGCGCTCAGCAAGGGTGGACTGGATGGGGAAACTGT
CAACAGTGGAGGGGCGCCTGTGCCGCTGGTGACGTACCCGAGTAAGCTCC
ATTATTTGCTTGGGTACTTTGCGTTGGTGGGCTTGAATCGATTGGAATGC
TTGTTGGGAGATTTTCAGGATGCGTTGGCGGTGGCAGAGCCGGTGATGGA
GGAGAGTCGGTCGGGAAATGCAGGGGCGGGATTGTTATTGTCCTCCAGCA
TAATTGCGCAGGTCTCATTGCATTATCACATTGGCTTGAGCTACCTGATG
ATCCGAAAATACCAGGAGGCGATCAAGACCTTCGTCTCGGTGCTGGACGT
CTACTTTAAGCACATGGAATCTATCAAGCAGCAACAACGCGCGCTTCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAAGGCCAGCCTGTCCAGCCGCCGGCC
AAGAACGCGGACGACCTCGCAGCAGGCAAGCTCGTGGACAAGGTAGCAGC
GATGCTCTTGATCGTGCACCATCTCTGCCCGGGGCAGCACATCCCTGAGA
ATATTCGTGGGCATCTGATGGGTGAAAAAATGAAGGACAAGCTTCGCCAG
gtgcagtcgggcgacgtggacgccatcgtcaccctgtttgtcctctccgc
ccccaaatttatcagCCCTGCCACGGACTACGAAGCAGCCGTGTCTGCCA
TGGGTACTGCGGGGCCGGGTGGGGCGGGCGGCAGGGGGGAGGAGGGGGAG
CAGGCCGGTCAGGGACTTATGGAGGGTTGCAGCGGATTGTGTTTGCGGAG
GAGGTGCGTCAGATGCTGGAGTTGAGGAAGCTGAGGGATTACCTGCGGTT
GTACTCGACGATTGGACTTGGGAAGCTATCGGCTTTTACGGGGCAGGACC
CGGAGGACATTCGGAGGGAGTTGGTGCAGTACAAGCATAAGCTGCTGCAG
TTGGAGGCGAGTACGGGCAGCTCTGTGCAGCCGAGTTTGGATTTCCATTA
TTATCTAGATGGGGACATGGTCCATGTTGATGCGGGCGAGCGTGAGAATA
GACAGGAGGTGAGCAAGCACTTCCAGTATCAGATTCGGAAGTTGGAAAAT
CTGGCAAGGACGTTGCGGCGATAG
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protein sequence of NO16G02350.1

>NO16G02350.1-protein ID=NO16G02350.1-protein|Name=NO16G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MSQLQPVRVRRIEKAFVTRLHGAVRAERPNEERIHDVYQESEEVAKEFNS
DPWPKAEAVASLVQGDRVFLLLYTEMAFQAFFKNKNVKATMGDRVGSWEN
YSALFTALIQDEDGQAMTEAAKAHGAEVMITGKWAFDIIYEFVYQFQEAC
QYRASALQSATNEAELQTVLEHKDVWTVDKVFNFLHQLVKVSKVREVLES
AALSKGGLDGETVNSGGAPVPLVTYPSKLHYLLGYFALVGLNRLECLLGD
FQDALAVAEPVMEESRSGNAGAGLLLSSSIIAQVSLHYHIGLSYLMIRKY
QEAIKTFVSVLDVYFKHMESIKQQQRALQQQQQQQQQQGQPVQPPAKNAD
DLAAGKLVDKVAAMLLIVHHLCPGQHIPENIRGHLMGEKMKDKLRQPCHG
LRSSRVCHGYCGAGWGGRQGGGGGAGRSGTYGGLQRIVFAEEVRQMLELR
KLRDYLRLYSTIGLGKLSAFTGQDPEDIRRELVQYKHKLLQLEASTGSSV
QPSLDFHYYLDGDMVHVDAGERENRQEVSKHFQYQIRKLENLARTLRR*
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protein sequence of NO16G02350.2

>NO16G02350.2-protein ID=NO16G02350.2-protein|Name=NO16G02350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MLISSFSHPNHTTAPSSSWYLGPAAAARMSGKFKAFVTRLHGAVRAERPN
EERIHDVYQESEEVAKEFNSDPWPKAEAVASLVQGDRVFLLLYTEMAFQA
FFKNKNVKATMGDRVGSWENYSALFTALIQDEDGQAMTEAAKAHGAEVMI
TGKWAFDIIYEFVYQFQEACQYRASALQSATNEAELQTVLEHKDVWTVDK
VFNFLHQLVKVSKVREVLESAALSKGGLDGETVNSGGAPVPLVTYPSKLH
YLLGYFALVGLNRLECLLGDFQDALAVAEPVMEESRSGNAGAGLLLSSSI
IAQVSLHYHIGLSYLMIRKYQEAIKTFVSVLDVYFKHMESIKQQQRALQQ
QQQQQQQQGQPVQPPAKNADDLAAGKLVDKVAAMLLIVHHLCPGQHIPEN
IRGHLMGEKMKDKLRQVQSGDVDAIVTLFVLSAPKFISPATDYEAAVSAM
GTAGPGGAGGRGEEGEQAGQGLMEGCSGLCLRRRCVRCWS*
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Synonyms
Publications