NO16G02310, NO16G02310 (gene) Nannochloropsis oceanica

Overview
NameNO16G02310
Unique NameNO16G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2120
Alignment locationchr16:668489..670608 +

Link to JBrowse

Properties
Property NameValue
DescriptionPDZ domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:668489..670608 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
Homology
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BLAST of NO16G02310 vs. NCBI_GenBank
Match: EWM23928.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 158.7 bits (400), Expect = 5.600e-35
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0 
Query:  376 FELFMMAVQRAKGEEAGGKGHGKKEDMGPLRFHDDPKWYFVRCAVPWMGQVGITVTNAMLLVGGRHRHVLSVSAVGEEGSGYRAGVRAGDCITKVEGRDVTGMPCAELMSTLQDLLRARKEIDPSMTLEFIFARSL 512
            FE+FM A  RA G          + ++   RFHDDP WYFV CAVPW  +VGITV N  ++V GR R  L+VS   E+GSGY AGVR GDC+ K+EGRD T MPC+ELM T+++L+  R+E DP++TLEFIFAR L
Sbjct:  346 FEIFMSATLRANGXXXXXXXXXXELEIP--RFHDDPTWYFVHCAVPWTSKVGITVVNTAVVVKGRPRQSLTVSTAAEDGSGYHAGVREGDCVVKIEGRDATSMPCSELMRTVRELIEDRRETDPTLTLEFIFARKL 479
The following BLAST results are available for this feature:
BLAST of NO16G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23928.15.600e-3555.15PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003188NSK003188Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02310.1NO16G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593829gene_6126Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100082g11gene6538Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02310.1NO16G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02310 ID=NO16G02310|Name=NO16G02310|organism=Nannochloropsis oceanica|type=gene|length=2120bp
ATGCCCAATACTGTAAGCCAGTGCTCACTCGGGCTACATTCTCATATGTT
CAGgtacgagccatatttgaatgtccatttaatcagggacgatatgtggg
tgtaagtgggaaggggagaatagcgcaccgatgagatgaggtcggcgaac
cataatatacaaaaaccgattgactcatgagcttcggctggcaggtaggg
ttccctgcgctttgcctcatttacccgcgacgacaaggtaatcgacgctg
gatgaagttggacgcgccggtctcccagctgccgctttacattgagtcat
tcggaggacccataacatgggacaagcagcagacaggccttcgtaccacg
gcatcagacttttctacactgaaaaatgacgatactcgcgcgaaaataca
cacaatacacagGCGACCTAAGCAACAGCACCAACAAAACCCCCAGCATC
CAGATCACCAACAACACAACGCCGGAACCATGCAGCATCAACTGCAGCGG
CAGGAGCAGCAGCAACAGCATAGCCACCGAGCGGCCGTGCACCATCATGC
GTATACCCACACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCACCTCCCCCCCCCCCAACTGGAACAGCAACAAGAAAAACAAAAACAC
CAGCAGCGCCAGCACCAGCAGCATCAACAGCTGCAGCATCAACACCACCA
TCACAATCGGCACCACAGTAAATTTTCCCATCACTCCTTACCACAGCAGC
ACCACCTGTCTTTTCATCACCACCACAATCCGCACCGTCACCAACAGCTG
CAGCTACAGCATCCCCCTCACCCTCCTCCCGACCAAGAACTAGACGACCT
TCTAGATGTGCTCGAATACATCCGCTCCCGGTGGAATCCCTCTCATACCG
TGCAGCAATTTGTAGGGAAGCGTATCCTCTGGGAACACAAACGAGACTTC
GCCCTATCCTTAGCGCGGGCAGTGGACCTGGCCATCACCCAAGGAAACCG
ACAAAATAGTGATATGCTGGTCGCCTCAGGGGGTGCACAACGCGCGGCCT
CCTCCCAAACAATGACCCACGCTCAAGAACTCGACCCTGCTGCCGCCACT
GAGCTATTCAACACCGTACAATTTCAGCAACAGCTGCAGGAGTCCGAGCA
ACAGGTCAAACAACGACAGCTGAAGCAGCAGCAGCGGAGATTGCAACAGC
AGCAGCAGAAAGAGGAACAGGGACCTCCGGCCGCCTGTCCCTCACCCGTT
TTGGACATCAGCGAAGCCTCGGCCTTGCTTGTCCGGACGGCCGCTACTGC
CAAGCGCAATGAAGCTGCTGCTTCCATCATCCTGCTGGCTGGCATTCCAT
TGCCAGGGGAATCCGACAAAGTAGTAGTAGCAGCAGCAGCAGCCCGAGAT
GTCGGTGGTGGCGGGAGTGACCAGGAATCTGGCACAGAGAAAGAGGGGGA
AGACAATCCCCCGCAGTACTCGGATCTTGAGGAATTTGAACTGTTCATGA
TGGCTGTCCAGCGGGCGAAAGGAGAGGAAGCAGGAGGGAAGGGGCATGGA
AAAAAGGAGGACATGGGACCGTTGCGTTTTCACGACGACCCGAAGTGGTA
CTTTGTGCGTTGTGCGGTTCCCTGGATGGGTCAGGTGGGTATCACGGTAA
CTAATGCGATGTTACTTGTTGGAGGTCGGCACCGGCATGTGTTGTCTGTG
TCAGCGGTTGGGGAAGAGGGGTCAGGCTACAGGGCTGGGGTGCGAGCGGG
TGATTGTATCACCAAGGTGGAGGGAAGGGATGTGACGGGCATGCCGTGCG
CGGAGCTGATGTCGACCTTGCAGGATTTGCTCAGGGCGAGGAAAGAAATT
GACCCTTCTATGACGCTGGAATTTATTTTCGCCCGCAGCCTTCCGCGGCA
GACCACGTATGAGGGTACCACAGGCTCTGTTGTCACTGTTGCTGCCGCTG
CTGCTGATGATGACGCTGTTGCTGCTGCTGTTAGTGACAGTGCTACTCCT
GGTGCCGATATTGTTGCTCAGGGTGCAACTACTTCCTCGTCGTCATCCTT
GTCCTCGACTGTGTGCACTGATAGCAGCAGCGCCAACACGGCGAGCAACA
CGCCACACTGCAACCGTTAG
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protein sequence of NO16G02310.1

>NO16G02310.1-protein ID=NO16G02310.1-protein|Name=NO16G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MPNTVSQCSLGLHSHMFRRPKQQHQQNPQHPDHQQHNAGTMQHQLQRQEQ
QQQHSHRAAVHHHAYTHTSQQQQQQQQQQQQHLPPPQLEQQQEKQKHQQR
QHQQHQQLQHQHHHHNRHHSKFSHHSLPQQHHLSFHHHHNPHRHQQLQLQ
HPPHPPPDQELDDLLDVLEYIRSRWNPSHTVQQFVGKRILWEHKRDFALS
LARAVDLAITQGNRQNSDMLVASGGAQRAASSQTMTHAQELDPAAATELF
NTVQFQQQLQESEQQVKQRQLKQQQRRLQQQQQKEEQGPPAACPSPVLDI
SEASALLVRTAATAKRNEAAASIILLAGIPLPGESDKVVVAAAAARDVGG
GGSDQESGTEKEGEDNPPQYSDLEEFELFMMAVQRAKGEEAGGKGHGKKE
DMGPLRFHDDPKWYFVRCAVPWMGQVGITVTNAMLLVGGRHRHVLSVSAV
GEEGSGYRAGVRAGDCITKVEGRDVTGMPCAELMSTLQDLLRARKEIDPS
MTLEFIFARSLPRQTTYEGTTGSVVTVAAAAADDDAVAAAVSDSATPGAD
IVAQGATTSSSSSLSSTVCTDSSSANTASNTPHCNR*
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Synonyms
Publications