NO16G02310.1, NO16G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02310.1
Unique NameNO16G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr16:668489..670608 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:668489..670608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02310.1 vs.
Match: EWM23928.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 1.300e-36
Identity = 190/518 (36.68%), Postives = 265/518 (51.16%), Query Frame = 0 
Query:   52 QQHSHRAAVHHHAYTHTSQQQQQ------QQQQQQQHLPPPQ-LEQQQEKQKHQQRQHQQHQQLQHQHHHHN---RHHSKFSHHSLPQQHHLSFHHHHNPHRHQ-QLQLQHPPHPPP---DQELDDLLDVLEYIRSRWNPSHTVQQFVGKRILWEHKRDFALSLARAVDLAITQGNRQNSDMLVASGGAQRAASSQTMTHAQELDPAAATELFNTVQFQQQLQESEQQVKQRQLKQQQRRLQQQQQKEEQGPP--------AACPSPVLDISEASALLVRTAATAKRNEAAASIILLAGIPLPGESDKVVVAAAAARDVGGGGSDQESGTEKEGEDNPPQYSDLEEFELFMMAVQRAKGEEAGGKGHGKKEDMGPLRFHDDPKWYFVRCAVPWMGQVGITVTNAMLLVGGRHRHVLSVSAVGEEGSGYRAGVRAGDCITKVEGRDVTGMPCAELMSTLQDLLRARKEIDPSMTLEFIFARS-LPRQTTYEGTTGSVVTVAAAAADDDAVAAAVSDSAT 547
            Q H  R  V    ++H  QQ  +              +PP Q +E ++    H Q Q+      QHQH +     R       HS        +   + P R + +LQ  HP    P   D ++D+LL +LE +R R+ P        G  I  + K D A+  AR VDLAI++G++    M  A    QRA   +  T A       A        F ++ ++   +  QR+   ++R  ++     E+G          A  PSP LDI EASALL+RTAA A+  EAAA + LLAGI +P E      A ++ R  GG G    +    E +D+    SD EEFE+FM A  RA G    GKG GK+ ++   RFHDDP WYFV CAVPW  +VGITV N  ++V GR R  L+VS   E+GSGY AGVR GDC+ K+EGRD T MPC+ELM T+++L+  R+E DP++TLEFIFAR  L R  +      S +   +A A+  +++ +V+ + T
Sbjct:   14 QTHQCRR-VQTSIFSHPGQQHHRVMFIRPSSHPDASIMPPTQYVENRRFTTNHIQEQNVAAVP-QHQHQYRRNSARPQECLGRHSQSVPRKPGYIPTYLPERAESKLQRPHPKTSSPAFHDPDMDNLLTLLECLRFRYMPYTKAPPGTGIHIPSKDKPDSAIFTARLVDLAISRGDQ---GMYSALTDLQRACFFKRDTDALR-SHGQARRAREGQAFPEEDRKDGCRRDQRRTSNKKRWRKRGHGALEEGKEGLMGFQCEARPPSPALDIPEASALLLRTAAAARDTEAAACLTLLAGISVPSEHR----AVSSERRAGGAGPYSST----EDDDSAASTSDQEEFEIFMSATLRANGNAGVGKGRGKELEIP--RFHDDPTWYFVHCAVPWTSKVGITVVNTAVVVKGRPRQSLTVSTAAEDGSGYHAGVREGDCVVKIEGRDATSMPCSELMRTVRELIEDRRETDPTLTLEFIFARKLLKRCDSRRSKVDSPLPSNSAVAEQTSLSTSVACTGT 515
The following BLAST results are available for this feature:
BLAST of NO16G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23928.11.300e-3636.68PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02310NO16G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02310.1NO16G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02310.1.cds1NO16G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02310.1.cds2NO16G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02310.1 ID=NO16G02310.1|Name=NO16G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp
ATGCCCAATACTGTAAGCCAGTGCTCACTCGGGCTACATTCTCATATGTT
CAGGCGACCTAAGCAACAGCACCAACAAAACCCCCAGCATCCAGATCACC
AACAACACAACGCCGGAACCATGCAGCATCAACTGCAGCGGCAGGAGCAG
CAGCAACAGCATAGCCACCGAGCGGCCGTGCACCATCATGCGTATACCCA
CACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTCC
CCCCCCCCCAACTGGAACAGCAACAAGAAAAACAAAAACACCAGCAGCGC
CAGCACCAGCAGCATCAACAGCTGCAGCATCAACACCACCATCACAATCG
GCACCACAGTAAATTTTCCCATCACTCCTTACCACAGCAGCACCACCTGT
CTTTTCATCACCACCACAATCCGCACCGTCACCAACAGCTGCAGCTACAG
CATCCCCCTCACCCTCCTCCCGACCAAGAACTAGACGACCTTCTAGATGT
GCTCGAATACATCCGCTCCCGGTGGAATCCCTCTCATACCGTGCAGCAAT
TTGTAGGGAAGCGTATCCTCTGGGAACACAAACGAGACTTCGCCCTATCC
TTAGCGCGGGCAGTGGACCTGGCCATCACCCAAGGAAACCGACAAAATAG
TGATATGCTGGTCGCCTCAGGGGGTGCACAACGCGCGGCCTCCTCCCAAA
CAATGACCCACGCTCAAGAACTCGACCCTGCTGCCGCCACTGAGCTATTC
AACACCGTACAATTTCAGCAACAGCTGCAGGAGTCCGAGCAACAGGTCAA
ACAACGACAGCTGAAGCAGCAGCAGCGGAGATTGCAACAGCAGCAGCAGA
AAGAGGAACAGGGACCTCCGGCCGCCTGTCCCTCACCCGTTTTGGACATC
AGCGAAGCCTCGGCCTTGCTTGTCCGGACGGCCGCTACTGCCAAGCGCAA
TGAAGCTGCTGCTTCCATCATCCTGCTGGCTGGCATTCCATTGCCAGGGG
AATCCGACAAAGTAGTAGTAGCAGCAGCAGCAGCCCGAGATGTCGGTGGT
GGCGGGAGTGACCAGGAATCTGGCACAGAGAAAGAGGGGGAAGACAATCC
CCCGCAGTACTCGGATCTTGAGGAATTTGAACTGTTCATGATGGCTGTCC
AGCGGGCGAAAGGAGAGGAAGCAGGAGGGAAGGGGCATGGAAAAAAGGAG
GACATGGGACCGTTGCGTTTTCACGACGACCCGAAGTGGTACTTTGTGCG
TTGTGCGGTTCCCTGGATGGGTCAGGTGGGTATCACGGTAACTAATGCGA
TGTTACTTGTTGGAGGTCGGCACCGGCATGTGTTGTCTGTGTCAGCGGTT
GGGGAAGAGGGGTCAGGCTACAGGGCTGGGGTGCGAGCGGGTGATTGTAT
CACCAAGGTGGAGGGAAGGGATGTGACGGGCATGCCGTGCGCGGAGCTGA
TGTCGACCTTGCAGGATTTGCTCAGGGCGAGGAAAGAAATTGACCCTTCT
ATGACGCTGGAATTTATTTTCGCCCGCAGCCTTCCGCGGCAGACCACGTA
TGAGGGTACCACAGGCTCTGTTGTCACTGTTGCTGCCGCTGCTGCTGATG
ATGACGCTGTTGCTGCTGCTGTTAGTGACAGTGCTACTCCTGGTGCCGAT
ATTGTTGCTCAGGGTGCAACTACTTCCTCGTCGTCATCCTTGTCCTCGAC
TGTGTGCACTGATAGCAGCAGCGCCAACACGGCGAGCAACACGCCACACT
GCAACCGTTAG
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protein sequence of NO16G02310.1

>NO16G02310.1-protein ID=NO16G02310.1-protein|Name=NO16G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MPNTVSQCSLGLHSHMFRRPKQQHQQNPQHPDHQQHNAGTMQHQLQRQEQ
QQQHSHRAAVHHHAYTHTSQQQQQQQQQQQQHLPPPQLEQQQEKQKHQQR
QHQQHQQLQHQHHHHNRHHSKFSHHSLPQQHHLSFHHHHNPHRHQQLQLQ
HPPHPPPDQELDDLLDVLEYIRSRWNPSHTVQQFVGKRILWEHKRDFALS
LARAVDLAITQGNRQNSDMLVASGGAQRAASSQTMTHAQELDPAAATELF
NTVQFQQQLQESEQQVKQRQLKQQQRRLQQQQQKEEQGPPAACPSPVLDI
SEASALLVRTAATAKRNEAAASIILLAGIPLPGESDKVVVAAAAARDVGG
GGSDQESGTEKEGEDNPPQYSDLEEFELFMMAVQRAKGEEAGGKGHGKKE
DMGPLRFHDDPKWYFVRCAVPWMGQVGITVTNAMLLVGGRHRHVLSVSAV
GEEGSGYRAGVRAGDCITKVEGRDVTGMPCAELMSTLQDLLRARKEIDPS
MTLEFIFARSLPRQTTYEGTTGSVVTVAAAAADDDAVAAAVSDSATPGAD
IVAQGATTSSSSSLSSTVCTDSSSANTASNTPHCNR*
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mRNA from alignment at chr16:668489..670608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02310.1 ID=NO16G02310.1|Name=NO16G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp|location=Sequence derived from alignment at chr16:668489..670608+ (Nannochloropsis oceanica)
ATGCCCAATACTGTAAGCCAGTGCTCACTCGGGCTACATTCTCATATGTT
CAGGTACGAGCCATATTTGAATGTCCATTTAATCAGGGACGATATGTGGG
TGTAAGTGGGAAGGGGAGAATAGCGCACCGATGAGATGAGGTCGGCGAAC
CATAATATACAAAAACCGATTGACTCATGAGCTTCGGCTGGCAGGTAGGG
TTCCCTGCGCTTTGCCTCATTTACCCGCGACGACAAGGTAATCGACGCTG
GATGAAGTTGGACGCGCCGGTCTCCCAGCTGCCGCTTTACATTGAGTCAT
TCGGAGGACCCATAACATGGGACAAGCAGCAGACAGGCCTTCGTACCACG
GCATCAGACTTTTCTACACTGAAAAATGACGATACTCGCGCGAAAATACA
CACAATACACAGGCGACCTAAGCAACAGCACCAACAAAACCCCCAGCATC
CAGATCACCAACAACACAACGCCGGAACCATGCAGCATCAACTGCAGCGG
CAGGAGCAGCAGCAACAGCATAGCCACCGAGCGGCCGTGCACCATCATGC
GTATACCCACACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCACCTCCCCCCCCCCCAACTGGAACAGCAACAAGAAAAACAAAAACAC
CAGCAGCGCCAGCACCAGCAGCATCAACAGCTGCAGCATCAACACCACCA
TCACAATCGGCACCACAGTAAATTTTCCCATCACTCCTTACCACAGCAGC
ACCACCTGTCTTTTCATCACCACCACAATCCGCACCGTCACCAACAGCTG
CAGCTACAGCATCCCCCTCACCCTCCTCCCGACCAAGAACTAGACGACCT
TCTAGATGTGCTCGAATACATCCGCTCCCGGTGGAATCCCTCTCATACCG
TGCAGCAATTTGTAGGGAAGCGTATCCTCTGGGAACACAAACGAGACTTC
GCCCTATCCTTAGCGCGGGCAGTGGACCTGGCCATCACCCAAGGAAACCG
ACAAAATAGTGATATGCTGGTCGCCTCAGGGGGTGCACAACGCGCGGCCT
CCTCCCAAACAATGACCCACGCTCAAGAACTCGACCCTGCTGCCGCCACT
GAGCTATTCAACACCGTACAATTTCAGCAACAGCTGCAGGAGTCCGAGCA
ACAGGTCAAACAACGACAGCTGAAGCAGCAGCAGCGGAGATTGCAACAGC
AGCAGCAGAAAGAGGAACAGGGACCTCCGGCCGCCTGTCCCTCACCCGTT
TTGGACATCAGCGAAGCCTCGGCCTTGCTTGTCCGGACGGCCGCTACTGC
CAAGCGCAATGAAGCTGCTGCTTCCATCATCCTGCTGGCTGGCATTCCAT
TGCCAGGGGAATCCGACAAAGTAGTAGTAGCAGCAGCAGCAGCCCGAGAT
GTCGGTGGTGGCGGGAGTGACCAGGAATCTGGCACAGAGAAAGAGGGGGA
AGACAATCCCCCGCAGTACTCGGATCTTGAGGAATTTGAACTGTTCATGA
TGGCTGTCCAGCGGGCGAAAGGAGAGGAAGCAGGAGGGAAGGGGCATGGA
AAAAAGGAGGACATGGGACCGTTGCGTTTTCACGACGACCCGAAGTGGTA
CTTTGTGCGTTGTGCGGTTCCCTGGATGGGTCAGGTGGGTATCACGGTAA
CTAATGCGATGTTACTTGTTGGAGGTCGGCACCGGCATGTGTTGTCTGTG
TCAGCGGTTGGGGAAGAGGGGTCAGGCTACAGGGCTGGGGTGCGAGCGGG
TGATTGTATCACCAAGGTGGAGGGAAGGGATGTGACGGGCATGCCGTGCG
CGGAGCTGATGTCGACCTTGCAGGATTTGCTCAGGGCGAGGAAAGAAATT
GACCCTTCTATGACGCTGGAATTTATTTTCGCCCGCAGCCTTCCGCGGCA
GACCACGTATGAGGGTACCACAGGCTCTGTTGTCACTGTTGCTGCCGCTG
CTGCTGATGATGACGCTGTTGCTGCTGCTGTTAGTGACAGTGCTACTCCT
GGTGCCGATATTGTTGCTCAGGGTGCAACTACTTCCTCGTCGTCATCCTT
GTCCTCGACTGTGTGCACTGATAGCAGCAGCGCCAACACGGCGAGCAACA
CGCCACACTGCAACCGTTAG
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Coding sequence (CDS) from alignment at chr16:668489..670608+

>NO16G02310.1 ID=NO16G02310.1|Name=NO16G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at chr16:668489..670608+ (Nannochloropsis oceanica)
ATGCCCAATACTGTAAGCCAGTGCTCACTCGGGCTACATTCTCATATGTT
CAGGCGACCTAAGCAACAGCACCAACAAAACCCCCAGCATCCAGATCACC
AACAACACAACGCCGGAACCATGCAGCATCAACTGCAGCGGCAGGAGCAG
CAGCAACAGCATAGCCACCGAGCGGCCGTGCACCATCATGCGTATACCCA
CACATCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCTCC
CCCCCCCCCAACTGGAACAGCAACAAGAAAAACAAAAACACCAGCAGCGC
CAGCACCAGCAGCATCAACAGCTGCAGCATCAACACCACCATCACAATCG
GCACCACAGTAAATTTTCCCATCACTCCTTACCACAGCAGCACCACCTGT
CTTTTCATCACCACCACAATCCGCACCGTCACCAACAGCTGCAGCTACAG
CATCCCCCTCACCCTCCTCCCGACCAAGAACTAGACGACCTTCTAGATGT
GCTCGAATACATCCGCTCCCGGTGGAATCCCTCTCATACCGTGCAGCAAT
TTGTAGGGAAGCGTATCCTCTGGGAACACAAACGAGACTTCGCCCTATCC
TTAGCGCGGGCAGTGGACCTGGCCATCACCCAAGGAAACCGACAAAATAG
TGATATGCTGGTCGCCTCAGGGGGTGCACAACGCGCGGCCTCCTCCCAAA
CAATGACCCACGCTCAAGAACTCGACCCTGCTGCCGCCACTGAGCTATTC
AACACCGTACAATTTCAGCAACAGCTGCAGGAGTCCGAGCAACAGGTCAA
ACAACGACAGCTGAAGCAGCAGCAGCGGAGATTGCAACAGCAGCAGCAGA
AAGAGGAACAGGGACCTCCGGCCGCCTGTCCCTCACCCGTTTTGGACATC
AGCGAAGCCTCGGCCTTGCTTGTCCGGACGGCCGCTACTGCCAAGCGCAA
TGAAGCTGCTGCTTCCATCATCCTGCTGGCTGGCATTCCATTGCCAGGGG
AATCCGACAAAGTAGTAGTAGCAGCAGCAGCAGCCCGAGATGTCGGTGGT
GGCGGGAGTGACCAGGAATCTGGCACAGAGAAAGAGGGGGAAGACAATCC
CCCGCAGTACTCGGATCTTGAGGAATTTGAACTGTTCATGATGGCTGTCC
AGCGGGCGAAAGGAGAGGAAGCAGGAGGGAAGGGGCATGGAAAAAAGGAG
GACATGGGACCGTTGCGTTTTCACGACGACCCGAAGTGGTACTTTGTGCG
TTGTGCGGTTCCCTGGATGGGTCAGGTGGGTATCACGGTAACTAATGCGA
TGTTACTTGTTGGAGGTCGGCACCGGCATGTGTTGTCTGTGTCAGCGGTT
GGGGAAGAGGGGTCAGGCTACAGGGCTGGGGTGCGAGCGGGTGATTGTAT
CACCAAGGTGGAGGGAAGGGATGTGACGGGCATGCCGTGCGCGGAGCTGA
TGTCGACCTTGCAGGATTTGCTCAGGGCGAGGAAAGAAATTGACCCTTCT
ATGACGCTGGAATTTATTTTCGCCCGCAGCCTTCCGCGGCAGACCACGTA
TGAGGGTACCACAGGCTCTGTTGTCACTGTTGCTGCCGCTGCTGCTGATG
ATGACGCTGTTGCTGCTGCTGTTAGTGACAGTGCTACTCCTGGTGCCGAT
ATTGTTGCTCAGGGTGCAACTACTTCCTCGTCGTCATCCTTGTCCTCGAC
TGTGTGCACTGATAGCAGCAGCGCCAACACGGCGAGCAACACGCCACACT
GCAACCGTTAG
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Synonyms
Publications