NO16G02160, NO16G02160 (gene) Nannochloropsis oceanica

Overview
NameNO16G02160
Unique NameNO16G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1753
Alignment locationchr16:630873..632625 +

Link to JBrowse

Properties
Property NameValue
DescriptionCholine monooxygenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:630873..632625 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0044237cellular metabolic process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036922Rieske_2Fe-2S_sf
IPR015879Ring_hydroxy_dOase_asu_C_dom
IPR017941Rieske_2Fe-2S
IPR001663Rng_hydr_dOase-A
Homology
BLAST of NO16G02160 vs. NCBI_GenBank
Match: EWM23896.1 (choline monooxygenase [Nannochloropsis gaditana])

HSP 1 Score: 415.6 bits (1067), Expect = 1.500e-112
Identity = 201/306 (65.69%), Postives = 238/306 (77.78%), Query Frame = 0
Query:   15 SRCFRTPPSSPSSL----GRPLST------LLKDLPFLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGATPLSSLPPF 311
            SR  R   SS SSL    G   ST      L +   +LK+ELARFDP VPIE ASTPPASWFT PAFH LEMAS+F++NPLCVGSTL IP PGDYFCGQVG+HPFIVLR+  G +KAFYNVCRHKGMRLVA D G++ +T   CPYHGWEYRLDGRLAKATR+ GI++F+PKDYGL+EIPL TWGPL+FL+FG      ++ +    V+  +G + LA+L PL ERLDAE GFS+GLRHV RR YR++CNHKVVSDN+LDN YHVPYAH ALG ALDL+SY A++HDRYS+Q+C+GA P +S P F
Sbjct:   41 SRTCRAGNSSSSSLPYSTGAKASTSPFERSLFQYKDYLKRELARFDPDVPIELASTPPASWFTDPAFHTLEMASIFSDNPLCVGSTLQIPLPGDYFCGQVGSHPFIVLREASGNVKAFYNVCRHKGMRLVAEDAGRVGQTVLTCPYHGWEYRLDGRLAKATRVAGIRDFAPKDYGLLEIPLWTWGPLVFLRFG------QAENEAPHVVGKDGSHPLAYLEPLLERLDAEHGFSSGLRHVRRRRYRVQCNHKVVSDNYLDNGYHVPYAHKALGNALDLSSYGASVHDRYSVQACRGA-PSTSSPSF 339          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_002738379.1 (PREDICTED: choline monooxygenase, chloroplastic-like [Saccoglossus kowalevskii])

HSP 1 Score: 236.5 bits (602), Expect = 1.300e-58
Identity = 114/256 (44.53%), Postives = 160/256 (62.50%), Query Frame = 0
Query:   42 LKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQS 298
            L++E+A+FD  +P+E+A+TPP++WFT P FH LE+ +VF +  +  G    I +PG +F G +G  P+IVLRD   ++KAFYNVCRH  M++V   +G +      CPYHGW Y L GRL KATR+RGI+NFS +++GLI + +  WGPLIF++       ++ S  +    E         L  L+ RLD   GFS+G++ + R  Y L CN KV  DN+LD  YHV  AH  L  ALD +SY   +H+ +SIQS
Sbjct:   31 LRREVAKFDANIPVEAATTPPSTWFTRPEFHQLEVHTVFHDAWMFAGRVDQITKPGKFFTGTIGKEPYIVLRDENNELKAFYNVCRHHAMQIVNDTEGTV--KDLQCPYHGWTYALSGRLKKATRLRGIKNFSARNFGLIPMMVKAWGPLIFIR------PNKISEEKDNFFE--------DLESLKNRLDG-IGFSSGMKFMKRITYTLNCNWKVFVDNYLDGGYHVSTAHKDLSVALDASSYRTAVHEWHSIQS 269          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_004507911.1 (PREDICTED: choline monooxygenase, chloroplastic [Cicer arietinum])

HSP 1 Score: 234.2 bits (596), Expect = 6.400e-58
Identity = 124/302 (41.06%), Postives = 171/302 (56.62%), Query Frame = 0
Query:    1 MKPFFTALSRRLVSSRCFRTPPSSPSSLGRPLSTLLKDLPFLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGAT 303
            M PF   L +    +  F   P+  SS+    S    DL   ++ + +F+P +P+E A TPP+SW+THP+F  LE+  VF +    VGST  I  PGD+F G++G   F+V RD  G + AFYNVCRH    L +G  GQ  K+ F CPYHGW Y L+G L KATRI G+++F+  ++GLI I + TWGP + L   +     +   S     E  G  S          L +  G  + L ++ RR Y ++CN KV  DN+LD  YHVPYAH  L   L+L SYS TL ++ SIQSC+G++
Sbjct:    7 MTPFIPNLRKGQTQNLNF---PNKHSSIRSCCSVGSSDLVVSQRLVQQFNPKIPVEEAVTPPSSWYTHPSFFHLELDRVFYKGWQAVGSTEQIKNPGDFFTGRLGDVEFVVCRDDSGNVHAFYNVCRHHASILASG-SGQ--KSCFVCPYHGWTYGLNGTLLKATRISGMRDFNVNEFGLIPIKVATWGPFVLLNLKKENLSEKEVDSHNVAKEWLGSCS---------ELLSTNGVDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLNLDSYSITLFEKVSIQSCEGSS 293          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: KDP36056.1 (hypothetical protein JCGZ_10308 [Jatropha curcas])

HSP 1 Score: 233.4 bits (594), Expect = 1.100e-57
Identity = 129/308 (41.88%), Postives = 175/308 (56.82%), Query Frame = 0
Query:    1 MKPFFTALSRRLVSSRCFRTPPSSP-SSLGRPLSTLLKDLPFLKQELA-RFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGATPLSS 307
            M    + +S R +SSR  +    +P  +  RP  T+   L    Q+L   FDP +PIE ASTPP+SW+T P+F   E+  VF      VG T  I  P D+F G++G   F+V R+  GK+ AF+NVCRH G  L +G  GQ  K+ F CPYH W Y LDG L KATRI G+QNF+  ++GLI I + TWGP I L   +          EG ++E E   S + +           G  + L HV RR+Y ++CN KV  DN+LD  YHVPYAH AL   L L SYS +++++ SIQ C+G++  S+
Sbjct:    1 MTTAISMISLRPISSRVHQIQQHNPIIAQHRPSLTVSFSLQTHCQKLVDEFDPHIPIEKASTPPSSWYTDPSFFDYELHRVFYRGWQAVGYTEQIKDPRDFFTGRLGNVEFLVCRNDDGKVHAFHNVCRHHGSLLASG-SGQ--KSCFVCPYHAWTYGLDGALLKATRITGMQNFNLNEFGLIPINVATWGPFILLNVEKE--SKLQQGVEGSMVENEWLGSCSEIL-------KNGGVDSSLNHVCRRVYNMECNWKVFCDNYLDGGYHVPYAHKALASGLKLDSYSTSVYEKVSIQRCEGSSTQSA 296          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_012074438.1 (choline monooxygenase, chloroplastic [Jatropha curcas])

HSP 1 Score: 233.4 bits (594), Expect = 1.100e-57
Identity = 129/308 (41.88%), Postives = 175/308 (56.82%), Query Frame = 0
Query:    1 MKPFFTALSRRLVSSRCFRTPPSSP-SSLGRPLSTLLKDLPFLKQELA-RFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGATPLSS 307
            M    + +S R +SSR  +    +P  +  RP  T+   L    Q+L   FDP +PIE ASTPP+SW+T P+F   E+  VF      VG T  I  P D+F G++G   F+V R+  GK+ AF+NVCRH G  L +G  GQ  K+ F CPYH W Y LDG L KATRI G+QNF+  ++GLI I + TWGP I L   +          EG ++E E   S + +           G  + L HV RR+Y ++CN KV  DN+LD  YHVPYAH AL   L L SYS +++++ SIQ C+G++  S+
Sbjct:    3 MTTAISMISLRPISSRVHQIQQHNPIIAQHRPSLTVSFSLQTHCQKLVDEFDPHIPIEKASTPPSSWYTDPSFFDYELHRVFYRGWQAVGYTEQIKDPRDFFTGRLGNVEFLVCRNDDGKVHAFHNVCRHHGSLLASG-SGQ--KSCFVCPYHAWTYGLDGALLKATRITGMQNFNLNEFGLIPINVATWGPFILLNVEKE--SKLQQGVEGSMVENEWLGSCSEIL-------KNGGVDSSLNHVCRRVYNMECNWKVFCDNYLDGGYHVPYAHKALASGLKLDSYSTSVYEKVSIQRCEGSSTQSA 298          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_019633636.1 (PREDICTED: choline monooxygenase, chloroplastic-like [Branchiostoma belcheri])

HSP 1 Score: 230.7 bits (587), Expect = 7.100e-57
Identity = 111/261 (42.53%), Postives = 155/261 (59.39%), Query Frame = 0
Query:   41 FLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGA 302
            ++ +E+ +F    P+E A+TPP+SWFT PA + LE  +VF  N + VG T  +  PG YF G VG  PF+V+RD    ++ F+NVCRH    L   D+G  D   F C YHGW Y LDGRL KA R+RGIQNFS +++GL  + +  WGPL+ +   R  G+   +  E              +T L+++LD + GF++GLR V RR YR+ CN KVV DN+LD  YHV Y H  L   L + +Y   + + YS+Q+C G+
Sbjct:   30 YVAEEVQKFCTETPVERATTPPSSWFTDPAIYGLEKRTVFKWNWVAVGRTDQVASPGQYFTGVVGDEPFLVVRDKSNTLRGFFNVCRHHAAILAGEDEGTAD--AFTCCYHGWTYGLDGRLTKAMRLRGIQNFSARNFGLKPMAVKAWGPLVLV---RPDGQEDGTDFE------------TQVTSLKDQLD-DLGFTSGLRFVERRRYRVNCNWKVVLDNYLDGGYHVEYLHRNLASNLSIDTYRTDVQELYSVQTCSGS 272          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_008351406.1 (PREDICTED: choline monooxygenase, chloroplastic-like [Malus domestica])

HSP 1 Score: 229.9 bits (585), Expect = 1.200e-56
Identity = 112/263 (42.59%), Postives = 157/263 (59.70%), Query Frame = 0
Query:   40 PFLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGAT 303
            P L   + +F+PT+PIE A TPP+SW+T+P+F++LE+ ++F      VG T  I   G++F G++G   F+V +D  GK++AF+NVCRH  M L  G      K+ F CPYHGW Y LDG L KATRI GIQNF+  ++GL+ + + TWGP I L   + V       S+ G ++ E   S A +        +  G  T L  V RR Y ++CN KV  DN+LD  YHVPYAH  L   L+L  YS T++++ SIQ C+  +
Sbjct:   39 PQLPSLVGQFEPTIPIERAGTPPSSWYTNPSFYSLEINTLFYRGWQAVGYTEQISNAGEFFTGRLGNVEFVVCQDGDGKLQAFHNVCRHHAMLLAYGSG---RKSCFVCPYHGWTYGLDGALLKATRITGIQNFNENEFGLVPLKVATWGPFILLNMEQNV------DSDPGSVQNEWLGSSAEVL-------SNNGIDTSLSFVCRRDYVIECNWKVFCDNYLDGGYHVPYAHKGLASGLNLDGYSTTMYEKVSIQKCENGS 285          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_008391562.2 (PREDICTED: LOW QUALITY PROTEIN: choline monooxygenase, chloroplastic [Malus domestica])

HSP 1 Score: 229.6 bits (584), Expect = 1.600e-56
Identity = 112/260 (43.08%), Postives = 156/260 (60.00%), Query Frame = 0
Query:   40 PFLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCK 300
            P L   + +F+PT+PIE A TPP+SW+T+P+F++LE+ ++F      VG T  I   G++F G++G   F+V +D  GK++AF+NVCRH  M L  G      K+ F CPYHGW Y LDG L KATRI GIQNF+  ++GL+ + + TWGP I L   + V       S+ G ++ E   S A +        +  G  T L  V RR Y ++CN KV  DN+LD  YHVPYAH  L   L+L  YS T++++ SIQ C+
Sbjct:   39 PQLPSLVGQFEPTIPIERAGTPPSSWYTNPSFYSLEIBTLFYRGWQAVGYTEQISNAGEFFTGRLGNVEFVVCQDGDGKLQAFHNVCRHHAMLLAYGSG---RKSCFVCPYHGWTYGLDGALLKATRITGIQNFNENEFGLVPLKVATWGPFILLNMEQNV------DSDPGSVQNEWLGSSAEVL-------SNNGIDTSLSFVCRRDYVIECNWKVFCDNYLDGGYHVPYAHKGLASGLNLDGYSTTMYEKVSIQKCE 282          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_018807260.1 (PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Juglans regia] >XP_018807261.1 PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Juglans regia])

HSP 1 Score: 229.6 bits (584), Expect = 1.600e-56
Identity = 118/255 (46.27%), Postives = 148/255 (58.04%), Query Frame = 0
Query:   48 RFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGAT 303
            +FDP VPIE A TPP+SW+ HP+F  LE+  VF      VG    I  P D+F G++G   F+V RD  GKI AF+NVCRH    L +G  GQ  K+ F CPYH W Y LDG L KATRI GIQNF+  ++GLI I + TWGP I L   + +   R + S+    E  G  S          + +  G  + L +V RR Y ++CN KV  DN+LD  YHVPYAH  L   L L SYS T+ +  SIQSC+G T
Sbjct:   64 QFDPKVPIEEAVTPPSSWYKHPSFLELELHRVFYRGWQAVGHIQQIKDPHDFFTGRLGDVEFVVCRDDSGKIHAFHNVCRHHASLLASG-SGQ--KSCFVCPYHAWTYGLDGHLVKATRIMGIQNFNVNEFGLIPIKVATWGPFILLNLDKWISPLREADSDTVADEWLGSCS---------EILSTNGVDSLLSYVCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLAFGLQLQSYSTTIFENVSIQSCEGGT 306          
BLAST of NO16G02160 vs. NCBI_GenBank
Match: XP_024194712.1 (choline monooxygenase, chloroplastic-like isoform X2 [Rosa chinensis] >PRQ37103.1 putative choline monooxygenase [Rosa chinensis])

HSP 1 Score: 229.2 bits (583), Expect = 2.100e-56
Identity = 124/302 (41.06%), Postives = 166/302 (54.97%), Query Frame = 0
Query:    1 MKPFFTALSRRLVSSRCFRTPPSSPSSLGRPLSTLLKDLPFLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGAT 303
            M+P    L   L S R F++      S+G P  TL+           +FDPT+PIE A TPP+SW+T P+F+A E+ SVF      VG T  I  PGD+F G++G   F+V RD  GK++AF+NVCRH    L  G      K+ F CPYH W Y LDG L KATRI GIQNF+  ++GL  + + TWGP +       V       S+  ++E E   S + +           G  T L +V RR Y ++CN KV  DN+LD  YHVPYAH  L   L+L  YS T++++ SIQ C+G +
Sbjct:   17 MRPKSPYLPHSLNSRRIFKSLSLPKPSVGAP--TLVD----------QFDPTIPIERAVTPPSSWYTDPSFYAQELDSVFYRGWQAVGYTEQIKNPGDFFTGRLGNVEFVVCRDEHGKLQAFHNVCRHHASILAYGSG---RKSCFVCPYHAWTYGLDGALLKATRITGIQNFNKHEFGLTPVKVATWGPFVLANMEPEV------DSDVEIVESEWLGSSSDVLSTN-------GVDTSLSYVCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLNLDGYSTTVYEKVSIQKCEGGS 290          
The following BLAST results are available for this feature:
BLAST of NO16G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23896.11.500e-11265.69choline monooxygenase [Nannochloropsis gaditana][more]
XP_002738379.11.300e-5844.53PREDICTED: choline monooxygenase, chloroplastic-li... [more]
XP_004507911.16.400e-5841.06PREDICTED: choline monooxygenase, chloroplastic [C... [more]
KDP36056.11.100e-5741.88hypothetical protein JCGZ_10308 [Jatropha curcas][more]
XP_012074438.11.100e-5741.88choline monooxygenase, chloroplastic [Jatropha cur... [more]
XP_019633636.17.100e-5742.53PREDICTED: choline monooxygenase, chloroplastic-li... [more]
XP_008351406.11.200e-5642.59PREDICTED: choline monooxygenase, chloroplastic-li... [more]
XP_008391562.21.600e-5643.08PREDICTED: LOW QUALITY PROTEIN: choline monooxygen... [more]
XP_018807260.11.600e-5646.27PREDICTED: choline monooxygenase, chloroplastic is... [more]
XP_024194712.12.100e-5641.06choline monooxygenase, chloroplastic-like isoform ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003201NSK003201Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02160.1NO16G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671762gene_6110Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100113g3gene6550Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02160.1NO16G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02160 ID=NO16G02160|Name=NO16G02160|organism=Nannochloropsis oceanica|type=gene|length=1753bp
ACAGCATGAAACCATTCTTCACGGCCTTATCCAGGCGCCTCGTCAGTTCT
CGCTGCTTCAGGACTCCTCCATCCTCCCCTTCCTCCCTCGGTCGTCCACT
CTCCACCTTGCTTAAGGACTTACCCTTCCTAAAACAAGAGCTCGCGCGCT
TCGACCCCACAGTGCCAATTGAATCCGCATCCACACCTCCTGCTTCCTGG
TTCACCCACCCGGCCTTCCATGCCTTGGAAATGGCGAGCGTCTTTGCTGA
GAATCCGCTATGTGTTGGCAGCACTCTGCACATTCCTCGCCCCGGGGACT
ACTTCTGCGGGCAGGTCGGCACGCATCCGTTCATTGTCTTGCGAGATACC
GTAGGGAAGATAAAGGCATTTTATAATGTTTGTCGCCATAAGGGCATGCG
GCTTGTCGCGGGCGACAAAGGGCAGATAGACAAGACCACCTTTGCCTGTC
CGTACCATGGGTGGGAATATCGATTGGATGGACGCTTGGCCAAGGCGACG
CGTATCAGGGGCATTCAAAACTTTTCCCCAAAAGACTACGGATTAATAGA
AATTCCACTCCACACCTGGGGACCATTGATTTTCCTTCAGTTCGGTCGCC
GGGTTGGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGGGTGATGGAGGGG
GAGGGGAGGTATTCTCTGGCTCACTTGACGCCATTGCGGGAGAGGCTGGA
TGCAGAGTTTGGATTTAGCACAGGATTGCGACATGTTGCACGACGGATGT
ACAGATTGAAGgtaagcagacggtgggaggatagcacgtcgtcgatactc
gcctttgcttgctttaactcttgccttctgctcgctgtcgtcggtcctgt
ttccccctttctctggctgcgacgaagccattctcaccattccctcgtct
ctttttgactccctctcttacttctttttttccttcctccaagTGCAATC
ACAAAGTCGTGAGTGATAATTTCCTCGACAACGCTTACCACGTCCCATAC
GCCCACCCTGCCCTCGGCCAGGCCCTCGACCTCGCCTCCTACTCCGCCAC
CCTACACGACCGTTACTCCATCCAGTCATGCAAAGGCGCTACCCCTCTTT
CCTCACTTCCTCCTTTTCACTGCTCTCCTGTGGACAATCACGAGCAGGCG
AGAGAAGGGGGGGGAGAGAAGCAGGAGGAGAAGCAGGAGGAGGAAGGGTG
GGAGGGAGTGGTCAAGAACGGGTGGGAGCAGCAGCTCTGTATGCACATGT
TTATCCTTCCTTGATGCTGAATCGTTATGGGCCTTGGATGGACATTAACC
TGCTTTTTCCTTTGTCTCACAACACCTCCGAAGTGGTTTTTGATTACTTC
TTGGAGGAGGCCTTCATTGCAAGGTTAGAGGGGGAAGAGGGAGGGAGGGA
GGGAGGGCTGGAGAGCTTTGTCAGGGAGTCATTGGAGGCCTCGGACGAGG
TGCAGAAGGAGGATATCTATTTGTGTGAGAATGTTCAGATTGGTTTAGAG
TCGGCAGGGAGGGAGGGAGGGAGGGAAGGGGGGTATGATCGGGGGAGGTA
TGCTCCGAAGGTGGAGTATTTGGATCATGCTTTCCATCAGTGGCTGGCAA
GGGATCTGGGGGAGGCCGTAAAGAAGATGGAAAAGGGAGAAAAGGAGGGA
GGGGTGGGCTGAGGGTGGATGGGAGACTACGGGGATGTGTCTTTCGTTTT
CCCCAAATGGTTGGATGGGAGGGAGACGGTTAGGAAGATGGACGAGGGGG
GGA
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protein sequence of NO16G02160.1

>NO16G02160.1-protein ID=NO16G02160.1-protein|Name=NO16G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MKPFFTALSRRLVSSRCFRTPPSSPSSLGRPLSTLLKDLPFLKQELARFD
PTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYF
CGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPY
HGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRV
GKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYR
LKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKG
ATPLSSLPPFHCSPVDNHEQAREGGGEKQEEKQEEEGWEGVVKNGWEQQL
CMHMFILP*
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Synonyms
Publications