NO16G02160.1, NO16G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02160.1
Unique NameNO16G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1571
Alignment locationchr16:630873..632625 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:630873..632625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02160.1 vs.
Match: EWM23896.1 (choline monooxygenase [Nannochloropsis gaditana])

HSP 1 Score: 416.0 bits (1068), Expect = 1.200e-112
Identity = 201/306 (65.69%), Postives = 238/306 (77.78%), Query Frame = 0 
Query:   15 SRCFRTPPSSPSSL----GRPLST------LLKDLPFLKQELARFDPTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYFCGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPYHGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRVGKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYRLKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKGATPLSSLPPF 311
            SR  R   SS SSL    G   ST      L +   +LK+ELARFDP VPIE ASTPPASWFT PAFH LEMAS+F++NPLCVGSTL IP PGDYFCGQVG+HPFIVLR+  G +KAFYNVCRHKGMRLVA D G++ +T   CPYHGWEYRLDGRLAKATR+ GI++F+PKDYGL+EIPL TWGPL+FL+FG      ++ +    V+  +G + LA+L PL ERLDAE GFS+GLRHV RR YR++CNHKVVSDN+LDN YHVPYAH ALG ALDL+SY A++HDRYS+Q+C+GA P +S P F
Sbjct:   41 SRTCRAGNSSSSSLPYSTGAKASTSPFERSLFQYKDYLKRELARFDPDVPIELASTPPASWFTDPAFHTLEMASIFSDNPLCVGSTLQIPLPGDYFCGQVGSHPFIVLREASGNVKAFYNVCRHKGMRLVAEDAGRVGQTVLTCPYHGWEYRLDGRLAKATRVAGIRDFAPKDYGLLEIPLWTWGPLVFLRFG------QAENEAPHVVGKDGSHPLAYLEPLLERLDAEHGFSSGLRHVRRRRYRVQCNHKVVSDNYLDNGYHVPYAHKALGNALDLSSYGASVHDRYSVQACRGA-PSTSSPSF 339
The following BLAST results are available for this feature:
BLAST of NO16G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23896.11.200e-11265.69choline monooxygenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02160NO16G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02160.1NO16G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02160.1.cds1NO16G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02160.1.cds2NO16G02160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02160.1 ID=NO16G02160.1|Name=NO16G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp
ACAGCATGAAACCATTCTTCACGGCCTTATCCAGGCGCCTCGTCAGTTCT
CGCTGCTTCAGGACTCCTCCATCCTCCCCTTCCTCCCTCGGTCGTCCACT
CTCCACCTTGCTTAAGGACTTACCCTTCCTAAAACAAGAGCTCGCGCGCT
TCGACCCCACAGTGCCAATTGAATCCGCATCCACACCTCCTGCTTCCTGG
TTCACCCACCCGGCCTTCCATGCCTTGGAAATGGCGAGCGTCTTTGCTGA
GAATCCGCTATGTGTTGGCAGCACTCTGCACATTCCTCGCCCCGGGGACT
ACTTCTGCGGGCAGGTCGGCACGCATCCGTTCATTGTCTTGCGAGATACC
GTAGGGAAGATAAAGGCATTTTATAATGTTTGTCGCCATAAGGGCATGCG
GCTTGTCGCGGGCGACAAAGGGCAGATAGACAAGACCACCTTTGCCTGTC
CGTACCATGGGTGGGAATATCGATTGGATGGACGCTTGGCCAAGGCGACG
CGTATCAGGGGCATTCAAAACTTTTCCCCAAAAGACTACGGATTAATAGA
AATTCCACTCCACACCTGGGGACCATTGATTTTCCTTCAGTTCGGTCGCC
GGGTTGGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGGGTGATGGAGGGG
GAGGGGAGGTATTCTCTGGCTCACTTGACGCCATTGCGGGAGAGGCTGGA
TGCAGAGTTTGGATTTAGCACAGGATTGCGACATGTTGCACGACGGATGT
ACAGATTGAAGTGCAATCACAAAGTCGTGAGTGATAATTTCCTCGACAAC
GCTTACCACGTCCCATACGCCCACCCTGCCCTCGGCCAGGCCCTCGACCT
CGCCTCCTACTCCGCCACCCTACACGACCGTTACTCCATCCAGTCATGCA
AAGGCGCTACCCCTCTTTCCTCACTTCCTCCTTTTCACTGCTCTCCTGTG
GACAATCACGAGCAGGCGAGAGAAGGGGGGGGAGAGAAGCAGGAGGAGAA
GCAGGAGGAGGAAGGGTGGGAGGGAGTGGTCAAGAACGGGTGGGAGCAGC
AGCTCTGTATGCACATGTTTATCCTTCCTTGATGCTGAATCGTTATGGGC
CTTGGATGGACATTAACCTGCTTTTTCCTTTGTCTCACAACACCTCCGAA
GTGGTTTTTGATTACTTCTTGGAGGAGGCCTTCATTGCAAGGTTAGAGGG
GGAAGAGGGAGGGAGGGAGGGAGGGCTGGAGAGCTTTGTCAGGGAGTCAT
TGGAGGCCTCGGACGAGGTGCAGAAGGAGGATATCTATTTGTGTGAGAAT
GTTCAGATTGGTTTAGAGTCGGCAGGGAGGGAGGGAGGGAGGGAAGGGGG
GTATGATCGGGGGAGGTATGCTCCGAAGGTGGAGTATTTGGATCATGCTT
TCCATCAGTGGCTGGCAAGGGATCTGGGGGAGGCCGTAAAGAAGATGGAA
AAGGGAGAAAAGGAGGGAGGGGTGGGCTGAGGGTGGATGGGAGACTACGG
GGATGTGTCTTTCGTTTTCCCCAAATGGTTGGATGGGAGGGAGACGGTTA
GGAAGATGGACGAGGGGGGGA
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protein sequence of NO16G02160.1

>NO16G02160.1-protein ID=NO16G02160.1-protein|Name=NO16G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MKPFFTALSRRLVSSRCFRTPPSSPSSLGRPLSTLLKDLPFLKQELARFD
PTVPIESASTPPASWFTHPAFHALEMASVFAENPLCVGSTLHIPRPGDYF
CGQVGTHPFIVLRDTVGKIKAFYNVCRHKGMRLVAGDKGQIDKTTFACPY
HGWEYRLDGRLAKATRIRGIQNFSPKDYGLIEIPLHTWGPLIFLQFGRRV
GKSRSSSSEGGVMEGEGRYSLAHLTPLRERLDAEFGFSTGLRHVARRMYR
LKCNHKVVSDNFLDNAYHVPYAHPALGQALDLASYSATLHDRYSIQSCKG
ATPLSSLPPFHCSPVDNHEQAREGGGEKQEEKQEEEGWEGVVKNGWEQQL
CMHMFILP*
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mRNA from alignment at chr16:630873..632625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02160.1 ID=NO16G02160.1|Name=NO16G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at chr16:630873..632625+ (Nannochloropsis oceanica)
ACAGCATGAAACCATTCTTCACGGCCTTATCCAGGCGCCTCGTCAGTTCT
CGCTGCTTCAGGACTCCTCCATCCTCCCCTTCCTCCCTCGGTCGTCCACT
CTCCACCTTGCTTAAGGACTTACCCTTCCTAAAACAAGAGCTCGCGCGCT
TCGACCCCACAGTGCCAATTGAATCCGCATCCACACCTCCTGCTTCCTGG
TTCACCCACCCGGCCTTCCATGCCTTGGAAATGGCGAGCGTCTTTGCTGA
GAATCCGCTATGTGTTGGCAGCACTCTGCACATTCCTCGCCCCGGGGACT
ACTTCTGCGGGCAGGTCGGCACGCATCCGTTCATTGTCTTGCGAGATACC
GTAGGGAAGATAAAGGCATTTTATAATGTTTGTCGCCATAAGGGCATGCG
GCTTGTCGCGGGCGACAAAGGGCAGATAGACAAGACCACCTTTGCCTGTC
CGTACCATGGGTGGGAATATCGATTGGATGGACGCTTGGCCAAGGCGACG
CGTATCAGGGGCATTCAAAACTTTTCCCCAAAAGACTACGGATTAATAGA
AATTCCACTCCACACCTGGGGACCATTGATTTTCCTTCAGTTCGGTCGCC
GGGTTGGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGGGTGATGGAGGGG
GAGGGGAGGTATTCTCTGGCTCACTTGACGCCATTGCGGGAGAGGCTGGA
TGCAGAGTTTGGATTTAGCACAGGATTGCGACATGTTGCACGACGGATGT
ACAGATTGAAGGTAAGCAGACGGTGGGAGGATAGCACGTCGTCGATACTC
GCCTTTGCTTGCTTTAACTCTTGCCTTCTGCTCGCTGTCGTCGGTCCTGT
TTCCCCCTTTCTCTGGCTGCGACGAAGCCATTCTCACCATTCCCTCGTCT
CTTTTTGACTCCCTCTCTTACTTCTTTTTTTCCTTCCTCCAAGTGCAATC
ACAAAGTCGTGAGTGATAATTTCCTCGACAACGCTTACCACGTCCCATAC
GCCCACCCTGCCCTCGGCCAGGCCCTCGACCTCGCCTCCTACTCCGCCAC
CCTACACGACCGTTACTCCATCCAGTCATGCAAAGGCGCTACCCCTCTTT
CCTCACTTCCTCCTTTTCACTGCTCTCCTGTGGACAATCACGAGCAGGCG
AGAGAAGGGGGGGGAGAGAAGCAGGAGGAGAAGCAGGAGGAGGAAGGGTG
GGAGGGAGTGGTCAAGAACGGGTGGGAGCAGCAGCTCTGTATGCACATGT
TTATCCTTCCTTGATGCTGAATCGTTATGGGCCTTGGATGGACATTAACC
TGCTTTTTCCTTTGTCTCACAACACCTCCGAAGTGGTTTTTGATTACTTC
TTGGAGGAGGCCTTCATTGCAAGGTTAGAGGGGGAAGAGGGAGGGAGGGA
GGGAGGGCTGGAGAGCTTTGTCAGGGAGTCATTGGAGGCCTCGGACGAGG
TGCAGAAGGAGGATATCTATTTGTGTGAGAATGTTCAGATTGGTTTAGAG
TCGGCAGGGAGGGAGGGAGGGAGGGAAGGGGGGTATGATCGGGGGAGGTA
TGCTCCGAAGGTGGAGTATTTGGATCATGCTTTCCATCAGTGGCTGGCAA
GGGATCTGGGGGAGGCCGTAAAGAAGATGGAAAAGGGAGAAAAGGAGGGA
GGGGTGGGCTGAGGGTGGATGGGAGACTACGGGGATGTGTCTTTCGTTTT
CCCCAAATGGTTGGATGGGAGGGAGACGGTTAGGAAGATGGACGAGGGGG
GGA
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Coding sequence (CDS) from alignment at chr16:630873..632625+

>NO16G02160.1 ID=NO16G02160.1|Name=NO16G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr16:630873..632625+ (Nannochloropsis oceanica)
ATGAAACCATTCTTCACGGCCTTATCCAGGCGCCTCGTCAGTTCTCGCTG
CTTCAGGACTCCTCCATCCTCCCCTTCCTCCCTCGGTCGTCCACTCTCCA
CCTTGCTTAAGGACTTACCCTTCCTAAAACAAGAGCTCGCGCGCTTCGAC
CCCACAGTGCCAATTGAATCCGCATCCACACCTCCTGCTTCCTGGTTCAC
CCACCCGGCCTTCCATGCCTTGGAAATGGCGAGCGTCTTTGCTGAGAATC
CGCTATGTGTTGGCAGCACTCTGCACATTCCTCGCCCCGGGGACTACTTC
TGCGGGCAGGTCGGCACGCATCCGTTCATTGTCTTGCGAGATACCGTAGG
GAAGATAAAGGCATTTTATAATGTTTGTCGCCATAAGGGCATGCGGCTTG
TCGCGGGCGACAAAGGGCAGATAGACAAGACCACCTTTGCCTGTCCGTAC
CATGGGTGGGAATATCGATTGGATGGACGCTTGGCCAAGGCGACGCGTAT
CAGGGGCATTCAAAACTTTTCCCCAAAAGACTACGGATTAATAGAAATTC
CACTCCACACCTGGGGACCATTGATTTTCCTTCAGTTCGGTCGCCGGGTT
GGCAAGAGCAGGAGCAGCAGCAGCGAGGGAGGGGTGATGGAGGGGGAGGG
GAGGTATTCTCTGGCTCACTTGACGCCATTGCGGGAGAGGCTGGATGCAG
AGTTTGGATTTAGCACAGGATTGCGACATGTTGCACGACGGATGTACAGA
TTGAAGTGCAATCACAAAGTCGTGAGTGATAATTTCCTCGACAACGCTTA
CCACGTCCCATACGCCCACCCTGCCCTCGGCCAGGCCCTCGACCTCGCCT
CCTACTCCGCCACCCTACACGACCGTTACTCCATCCAGTCATGCAAAGGC
GCTACCCCTCTTTCCTCACTTCCTCCTTTTCACTGCTCTCCTGTGGACAA
TCACGAGCAGGCGAGAGAAGGGGGGGGAGAGAAGCAGGAGGAGAAGCAGG
AGGAGGAAGGGTGGGAGGGAGTGGTCAAGAACGGGTGGGAGCAGCAGCTC
TGTATGCACATGTTTATCCTTCCTTGA
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Synonyms
Publications