NO16G02120, NO16G02120 (gene) Nannochloropsis oceanica

Overview
NameNO16G02120
Unique NameNO16G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr16:621136..621732 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:621136..621732 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G02120 vs. NCBI_GenBank
Match: EWM29520.1 (hypothetical protein Naga_100006g93 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 1.300e-12
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 0 
Query:    9 DGGDMRAFLRIVGAVLVPNQTGSVVLDAAHTNGRSLWTFLFSLLGRSAMGQNILSESSVWKLMHQYQRRLYRTDLDKRKEI-----IGD-IDWKKPKHDRLFSLILPRSESPTTRKKNPTPIK-VVTVRGYFYMGVSLRDPHTNRALPGDLENVLHRLATGISSVVVEEAMRQYKHLWASHEPLPLTRVRWRRI 196
            +G     ++R+ GA+L P   G VV D   T G SLWTF   LLG  A+G   L ES+ WK +     +L +   +   +I     IG+ I W++    R F + +PR       ++    +   V V+  F +G++LRDP ++  +   L N + R+A G     +     +Y+ LW ++EPL L + +  R+
Sbjct:  138 EGVHHEPWIRLFGAILQPAADGFVVTDHTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSIGIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPRPPXXXXXEEAAAELPGPVRVKSTFALGITLRDP-SDPDVQRALANAVDRIAPGAVPSRMGLVFAEYRRLWNAYEPLSLQQRQHGRV 330
The following BLAST results are available for this feature:
BLAST of NO16G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29520.11.300e-1229.90hypothetical protein Naga_100006g93 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02120.1NO16G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593765gene_6106Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02120.1NO16G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02120 ID=NO16G02120|Name=NO16G02120|organism=Nannochloropsis oceanica|type=gene|length=597bp
ATGCCCACGTCGTCCACTACCCCCGATGGCGGGGATATGAGGGCCTTTTT
GCGAATAGTCGGCGCTGTTCTAGTTCCGAACCAAACGGGCTCTGTCGTTC
TGGACGCCGCGCACACCAATGGCAGAAGCCTCTGGACGTTCCTCTTTTCG
TTGCTCGGACGCTCTGCGATGGGCCAAAATATTTTATCTGAAAGTAGTGT
CTGGAAACTCATGCATCAATACCAACGGCGGCTCTATCGCACGGACCTCG
ATAAACGAAAAGAAATTATAGGTGACATAGACTGGAAGAAGCCCAAGCAT
GACCGTCTTTTCTCCCTCATCCTTCCCCGAAGTGAGTCCCCTACCACGAG
GAAGAAGAATCCGACCCCGATAAAAGTGGTTACAGTGCGAGGGTATTTCT
ATATGGGCGTGAGCCTCCGCGACCCACACACGAATCGGGCACTGCCAGGG
GACCTGGAGAATGTTCTGCATCGTTTGGCAACAGGGATAAGCTCCGTGGT
TGTAGAGGAGGCCATGCGGCAGTACAAGCATTTATGGGCGAGCCATGAGC
CGTTGCCTTTGACGCGTGTTCGGTGGCGACGAATCGTGATGGAGTGA
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protein sequence of NO16G02120.1

>NO16G02120.1-protein ID=NO16G02120.1-protein|Name=NO16G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPTSSTTPDGGDMRAFLRIVGAVLVPNQTGSVVLDAAHTNGRSLWTFLFS
LLGRSAMGQNILSESSVWKLMHQYQRRLYRTDLDKRKEIIGDIDWKKPKH
DRLFSLILPRSESPTTRKKNPTPIKVVTVRGYFYMGVSLRDPHTNRALPG
DLENVLHRLATGISSVVVEEAMRQYKHLWASHEPLPLTRVRWRRIVME*
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Synonyms
Publications