NO16G02120.1, NO16G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02120.1
Unique NameNO16G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr16:621136..621732 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:621136..621732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02120.1 vs.
Match: EWM29520.1 (hypothetical protein Naga_100006g93 [Nannochloropsis gaditana])

HSP 1 Score: 88.2 bits (217), Expect = 3.100e-14
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 0 
Query:    9 DGGDMRAFLRIVGAVLVPNQTGSVVLDAAHTNGRSLWTFLFSLLGRSAMGQNILSESSVWKLMHQYQRRLYRTDLDKRKEI-----IGD-IDWKKPKHDRLFSLILPRSESPTTRKKNPTPIK-VVTVRGYFYMGVSLRDPHTNRALPGDLENVLHRLATGISSVVVEEAMRQYKHLWASHEPLPLTRVRWRRI 196
            +G     ++R+ GA+L P   G VV D   T G SLWTF   LLG  A+G   L ES+ WK +     +L +   +   +I     IG+ I W++    R F + +PR   P T ++    +   V V+  F +G++LRDP ++  +   L N + R+A G     +     +Y+ LW ++EPL L + +  R+
Sbjct:  138 EGVHHEPWIRLFGAILQPAADGFVVTDHTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSIGIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPRPPPPRTTEEAAAELPGPVRVKSTFALGITLRDP-SDPDVQRALANAVDRIAPGAVPSRMGLVFAEYRRLWNAYEPLSLQQRQHGRV 330
The following BLAST results are available for this feature:
BLAST of NO16G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29520.13.100e-1430.93hypothetical protein Naga_100006g93 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02120NO16G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02120.1NO16G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02120.1.cds1NO16G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02120.1 ID=NO16G02120.1|Name=NO16G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
ATGCCCACGTCGTCCACTACCCCCGATGGCGGGGATATGAGGGCCTTTTT
GCGAATAGTCGGCGCTGTTCTAGTTCCGAACCAAACGGGCTCTGTCGTTC
TGGACGCCGCGCACACCAATGGCAGAAGCCTCTGGACGTTCCTCTTTTCG
TTGCTCGGACGCTCTGCGATGGGCCAAAATATTTTATCTGAAAGTAGTGT
CTGGAAACTCATGCATCAATACCAACGGCGGCTCTATCGCACGGACCTCG
ATAAACGAAAAGAAATTATAGGTGACATAGACTGGAAGAAGCCCAAGCAT
GACCGTCTTTTCTCCCTCATCCTTCCCCGAAGTGAGTCCCCTACCACGAG
GAAGAAGAATCCGACCCCGATAAAAGTGGTTACAGTGCGAGGGTATTTCT
ATATGGGCGTGAGCCTCCGCGACCCACACACGAATCGGGCACTGCCAGGG
GACCTGGAGAATGTTCTGCATCGTTTGGCAACAGGGATAAGCTCCGTGGT
TGTAGAGGAGGCCATGCGGCAGTACAAGCATTTATGGGCGAGCCATGAGC
CGTTGCCTTTGACGCGTGTTCGGTGGCGACGAATCGTGATGGAGTGA
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protein sequence of NO16G02120.1

>NO16G02120.1-protein ID=NO16G02120.1-protein|Name=NO16G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPTSSTTPDGGDMRAFLRIVGAVLVPNQTGSVVLDAAHTNGRSLWTFLFS
LLGRSAMGQNILSESSVWKLMHQYQRRLYRTDLDKRKEIIGDIDWKKPKH
DRLFSLILPRSESPTTRKKNPTPIKVVTVRGYFYMGVSLRDPHTNRALPG
DLENVLHRLATGISSVVVEEAMRQYKHLWASHEPLPLTRVRWRRIVME*
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mRNA from alignment at chr16:621136..621732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02120.1 ID=NO16G02120.1|Name=NO16G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=597bp|location=Sequence derived from alignment at chr16:621136..621732- (Nannochloropsis oceanica)
ATGCCCACGTCGTCCACTACCCCCGATGGCGGGGATATGAGGGCCTTTTT
GCGAATAGTCGGCGCTGTTCTAGTTCCGAACCAAACGGGCTCTGTCGTTC
TGGACGCCGCGCACACCAATGGCAGAAGCCTCTGGACGTTCCTCTTTTCG
TTGCTCGGACGCTCTGCGATGGGCCAAAATATTTTATCTGAAAGTAGTGT
CTGGAAACTCATGCATCAATACCAACGGCGGCTCTATCGCACGGACCTCG
ATAAACGAAAAGAAATTATAGGTGACATAGACTGGAAGAAGCCCAAGCAT
GACCGTCTTTTCTCCCTCATCCTTCCCCGAAGTGAGTCCCCTACCACGAG
GAAGAAGAATCCGACCCCGATAAAAGTGGTTACAGTGCGAGGGTATTTCT
ATATGGGCGTGAGCCTCCGCGACCCACACACGAATCGGGCACTGCCAGGG
GACCTGGAGAATGTTCTGCATCGTTTGGCAACAGGGATAAGCTCCGTGGT
TGTAGAGGAGGCCATGCGGCAGTACAAGCATTTATGGGCGAGCCATGAGC
CGTTGCCTTTGACGCGTGTTCGGTGGCGACGAATCGTGATGGAGTGA
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Coding sequence (CDS) from alignment at chr16:621136..621732-

>NO16G02120.1 ID=NO16G02120.1|Name=NO16G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at chr16:621136..621732- (Nannochloropsis oceanica)
ATGCCCACGTCGTCCACTACCCCCGATGGCGGGGATATGAGGGCCTTTTT
GCGAATAGTCGGCGCTGTTCTAGTTCCGAACCAAACGGGCTCTGTCGTTC
TGGACGCCGCGCACACCAATGGCAGAAGCCTCTGGACGTTCCTCTTTTCG
TTGCTCGGACGCTCTGCGATGGGCCAAAATATTTTATCTGAAAGTAGTGT
CTGGAAACTCATGCATCAATACCAACGGCGGCTCTATCGCACGGACCTCG
ATAAACGAAAAGAAATTATAGGTGACATAGACTGGAAGAAGCCCAAGCAT
GACCGTCTTTTCTCCCTCATCCTTCCCCGAAGTGAGTCCCCTACCACGAG
GAAGAAGAATCCGACCCCGATAAAAGTGGTTACAGTGCGAGGGTATTTCT
ATATGGGCGTGAGCCTCCGCGACCCACACACGAATCGGGCACTGCCAGGG
GACCTGGAGAATGTTCTGCATCGTTTGGCAACAGGGATAAGCTCCGTGGT
TGTAGAGGAGGCCATGCGGCAGTACAAGCATTTATGGGCGAGCCATGAGC
CGTTGCCTTTGACGCGTGTTCGGTGGCGACGAATCGTGATGGAGTGA
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Synonyms
Publications