NO16G02060, NO16G02060 (gene) Nannochloropsis oceanica

Overview
NameNO16G02060
Unique NameNO16G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1755
Alignment locationchr16:605995..607749 -

Link to JBrowse

Properties
Property NameValue
DescriptionCold inducible rna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:605995..607749 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
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BLAST of NO16G02060 vs. NCBI_GenBank
Match: EWM23903.1 (cold inducible rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 147.5 bits (371), Expect = 6.700e-32
Identity = 78/130 (60.00%), Postives = 95/130 (73.08%), Query Frame = 0 
Query:   39 PSSTTTNTAIASALGSRRHISDKLFIRIVPESTTTDSLHDFFRSYGPIRDVRIVTPPREDRPPYAFVEFENVKSALAAMEEMEFRRFAGRLIFPIFHAEKSSNNSSGGVRGGWGSKDGDRRGRDRRNQGK 169
            P S    +  A A GS RHIS KLFIRIVP STT +SLH+F RSYGPIR+V+IV P R+DRPP+AFVEF+N+KSALAAMEEMEFRR  GRLIFP FH +   +  SG ++G       +R G++ RNQG+
Sbjct:   28 PRSVIDTSLTAFAFGSHRHISTKLFIRIVPHSTTPESLHEFLRSYGPIREVKIVPPTRDDRPPFAFVEFDNLKSALAAMEEMEFRRLEGRLIFPTFHVD---HGRSGNLQG------ANRSGKEHRNQGR 148
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BLAST of NO16G02060 vs. NCBI_GenBank
Match: EJK76002.1 (hypothetical protein THAOC_02254 [Thalassiosira oceanica])

HSP 1 Score: 63.9 bits (154), Expect = 9.800e-7
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 0 
Query:   58 ISDKLFIRIVPESTTTDSLHDFFRSYGPIRDVRIVTPPREDRPPYAFVEFENVKSALAAMEEMEFRRFAGRLI 131
            ++D+LF+R +P +TT + LH+ F  +G I  V I     +    YAFVEFE+ K A  AME M+   F GRLI
Sbjct:  321 LADRLFVRNLPFTTTEEELHETFSHFGQINSVHIPVDDAKRNKGYAFVEFESKKDAKIAMESMDGEDFQGRLI 393
The following BLAST results are available for this feature:
BLAST of NO16G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23903.16.700e-3260.00cold inducible rna binding protein [Nannochloropsi... [more]
EJK76002.19.800e-743.84hypothetical protein THAOC_02254 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02060.1NO16G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649293gene_6099Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02060.1NO16G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02060 ID=NO16G02060|Name=NO16G02060|organism=Nannochloropsis oceanica|type=gene|length=1755bp
GGAGGTGGGCCGACAAAAGCCTGTGCATTTATATGTAGTGCATGAAGGGT
TATTGAATGACGACATTCTGCTGTAAATGAATCGATGCCTTGTACTGGCA
TTTGGCATCTTTGCATGAGCTTGTAGGCAAAGGGGCGCGGGAGAAAGAGG
CCGTTATGATGGTTTAAGCGACGCATTTCTCACAGCGACCTCCCGACTCC
TGCAGCTAAGCCCAAGGCATCTCTCTATTCTATACTTAAAACAACACAAG
CCACAGGACATTCATCGGTATGAGAATAAGAAATGTATGAATCTCGTACT
GATGGCTACGCCAGTTGCTTTCGGTGTGGGTGCCACGGGCCTGCTGCATT
ACCTGGCTAGATACTCATCTACGTCCCAGCGCCAATAGACACCTCATTTC
TTGCCAAAAAACATACACACCCAAACATAACGTAGGAATCATCCATGATG
ATGCTTGCAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTT
GGCGCGTGCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCCCTCATC
ATCTTCACCCCAGCAGCACCACAACCAATACTGCGATAGCCTCTGCACTT
GGTAGCCGTCGGCACATTTCGGACAAACTTTTTATTCGAAgtacgttgtg
aagtgttgaaaatgctcttgatttagtggacgtgcagaattatgaggtga
gcgcacgtgactcatacttcccccgccctcccccctttttgaccatacgc
ccacagTTGTCCCTGAATCCACCACCACCGACTCTCTCCACGACTTCTTC
CGTTCCTATGGGCCTATCCGCGACGgtacgtacactctcattccttcttt
gtttcgtgagtcaaattgactcatccttctttcctcctttccctgtcaaa
ccaccttggaacagTGAGGATTGTGACCCCACCACGAGAAGACCGCCCGC
CTTATGCTTTCGTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATG
GAGGAAATGGAATTTAGGgtacggcttgttcagtttgtatatctgtgtgt
atttctatgttatgtatgcgtgtatctgtgggcgtgcatgtatgtacgcg
tctttggtgaggtacaatgcaagcgggagagtcaccgccaagaaactaac
caattttcaatctccacctctcaacaccacgtaaacgaccacccgcacag
CGTTTCGCGGGCCGTCTTATTTTCCCCATTTTCCACGCCGAGAAGAGTAG
CAACAACAGCAGCGGAGGTGTTCGTGGTGGTTGGGGCAGCAAGGACGGAG
ATCGACGTGGCCGCGACAGGAGGAACCAAGGAAAGGACTACTATTACAAC
AGGGACAGTAGAGGAGGAAAGGGTGGAGTGGAAGGGTATCAGAACTCGAC
GTCGCTCAACAGCAGTAACAGTACGGATCGAAAAGGTCATCAGCAGCCGC
AATATCAACACCAGCACCAACACCAGCATCAAAATGAACAACGAAGACAG
AACCAGAGACAGCCGGCAGTTGCTGAGAGTGGGGAAAGATGGGCTCAGAG
CACTGCTGCTGTTGCTGCTTCGTCGGCAGAGACGCCAGCGGTGGCGGAAG
ATCTAGAAGGAACATTTACTTCTGGCAAAAGCGGGACCGATACCCAAGGG
CAGCCAACAGGGAAGAATAGTGGGAAGAAAAGGGGTTGGTACCGGAAGAA
GAAGCGGCAAGCAGAGGGAGGGGGAGGAGGAGGCGGAGGGGGAGGGGGGG
AGTGA
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protein sequence of NO16G02060.1

>NO16G02060.1-protein ID=NO16G02060.1-protein|Name=NO16G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MMMLAGCRSAGSGSSCRLLARAGAQAGATSPSSPHHLHPSSTTTNTAIAS
ALGSRRHISDKLFIRIVPESTTTDSLHDFFRSYGPIRDVRIVTPPREDRP
PYAFVEFENVKSALAAMEEMEFRRFAGRLIFPIFHAEKSSNNSSGGVRGG
WGSKDGDRRGRDRRNQGKDYYYNRDSRGGKGGVEGYQNSTSLNSSNSTDR
KGHQQPQYQHQHQHQHQNEQRRQNQRQPAVAESGERWAQSTAAVAASSAE
TPAVAEDLEGTFTSGKSGTDTQGQPTGKNSGKKRGWYRKKKRQAEGGGGG
GGGGGGE*
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Synonyms
Publications