NO16G02060.1, NO16G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02060.1
Unique NameNO16G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr16:605995..607749 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:605995..607749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02060.1 vs.
Match: EWM23903.1 (cold inducible rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 131.3 bits (329), Expect = 5.000e-27
Identity = 104/250 (41.60%), Postives = 135/250 (54.00%), Query Frame = 0 
Query:   39 PSSTTTNTAIASALGSRRHISDKLFIRIVPESTTTDSLHDFFRSYGPIRDVRIVTPPREDRPPYAFVEFENVKSALAAMEEMEFRRFAGRLIFPIFHAEKSSNNSSGGVRGGWGSKDGDRRGRDRRNQGKDYYYNRDSRGGKGGVEGYQNSTSLNSSNSTDRKGHQQPQYQHQHQHQHQNEQRRQNQRQPAVAESGERWAQSTAAVAASSAETPAVAEDLEGTFTSGKSGT-----DTQGQPTGKNSGKK 284
            P S    +  A A GS RHIS KLFIRIVP STT +SLH+F RSYGPIR+V+IV P R+DRPP+AFVEF+N+KSALAAMEEMEFRR  GRLIFP FH +   +  SG ++G       +R G++ RNQG+        RG   GV     + S+   +  D+   +Q              Q RQ +  P V  SG    +      +   E+ A AE+  G  T    GT     D+ GQ   ++  K+
Sbjct:   28 PRSVIDTSLTAFAFGSHRHISTKLFIRIVPHSTTPESLHEFLRSYGPIREVKIVPPTRDDRPPFAFVEFDNLKSALAAMEEMEFRRLEGRLIFPTFHVD---HGRSGNLQG------ANRSGKEHRNQGRGLSSRTRLRG--DGV-----NISVTGRHGRDKSLSEQ--------------QERQAEGGPNVQISGHDGEEQG---VSGKVESSAAAEEDLGLRTDSLDGTAAGSHDSVGQSISESGFKR 244
The following BLAST results are available for this feature:
BLAST of NO16G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23903.15.000e-2741.60cold inducible rna binding protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02060NO16G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02060.1NO16G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02060.1.cds1NO16G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02060.1.cds2NO16G02060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02060.1.cds3NO16G02060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02060.1.cds4NO16G02060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02060.1 ID=NO16G02060.1|Name=NO16G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
GGAGGTGGGCCGACAAAAGCCTGTGCATTTATATGTAGTGCATGAAGGGT
TATTGAATGACGACATTCTGCTGTAAATGAATCGATGCCTTGTACTGGCA
TTTGGCATCTTTGCATGAGCTTGTAGGCAAAGGGGCGCGGGAGAAAGAGG
CCGTTATGATGGTTTAAGCGACGCATTTCTCACAGCGACCTCCCGACTCC
TGCAGCTAAGCCCAAGGCATCTCTCTATTCTATACTTAAAACAACACAAG
CCACAGGACATTCATCGGTATGAGAATAAGAAATGTATGAATCTCGTACT
GATGGCTACGCCAGTTGCTTTCGGTGTGGGTGCCACGGGCCTGCTGCATT
ACCTGGCTAGATACTCATCTACGTCCCAGCGCCAATAGACACCTCATTTC
TTGCCAAAAAACATACACACCCAAACATAACGTAGGAATCATCCATGATG
ATGCTTGCAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTT
GGCGCGTGCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCCCTCATC
ATCTTCACCCCAGCAGCACCACAACCAATACTGCGATAGCCTCTGCACTT
GGTAGCCGTCGGCACATTTCGGACAAACTTTTTATTCGAATTGTCCCTGA
ATCCACCACCACCGACTCTCTCCACGACTTCTTCCGTTCCTATGGGCCTA
TCCGCGACGTGAGGATTGTGACCCCACCACGAGAAGACCGCCCGCCTTAT
GCTTTCGTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATGGAGGA
AATGGAATTTAGGCGTTTCGCGGGCCGTCTTATTTTCCCCATTTTCCACG
CCGAGAAGAGTAGCAACAACAGCAGCGGAGGTGTTCGTGGTGGTTGGGGC
AGCAAGGACGGAGATCGACGTGGCCGCGACAGGAGGAACCAAGGAAAGGA
CTACTATTACAACAGGGACAGTAGAGGAGGAAAGGGTGGAGTGGAAGGGT
ATCAGAACTCGACGTCGCTCAACAGCAGTAACAGTACGGATCGAAAAGGT
CATCAGCAGCCGCAATATCAACACCAGCACCAACACCAGCATCAAAATGA
ACAACGAAGACAGAACCAGAGACAGCCGGCAGTTGCTGAGAGTGGGGAAA
GATGGGCTCAGAGCACTGCTGCTGTTGCTGCTTCGTCGGCAGAGACGCCA
GCGGTGGCGGAAGATCTAGAAGGAACATTTACTTCTGGCAAAAGCGGGAC
CGATACCCAAGGGCAGCCAACAGGGAAGAATAGTGGGAAGAAAAGGGGTT
GGTACCGGAAGAAGAAGCGGCAAGCAGAGGGAGGGGGAGGAGGAGGCGGA
GGGGGAGGGGGGGAGTGA
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protein sequence of NO16G02060.1

>NO16G02060.1-protein ID=NO16G02060.1-protein|Name=NO16G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MMMLAGCRSAGSGSSCRLLARAGAQAGATSPSSPHHLHPSSTTTNTAIAS
ALGSRRHISDKLFIRIVPESTTTDSLHDFFRSYGPIRDVRIVTPPREDRP
PYAFVEFENVKSALAAMEEMEFRRFAGRLIFPIFHAEKSSNNSSGGVRGG
WGSKDGDRRGRDRRNQGKDYYYNRDSRGGKGGVEGYQNSTSLNSSNSTDR
KGHQQPQYQHQHQHQHQNEQRRQNQRQPAVAESGERWAQSTAAVAASSAE
TPAVAEDLEGTFTSGKSGTDTQGQPTGKNSGKKRGWYRKKKRQAEGGGGG
GGGGGGE*
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mRNA from alignment at chr16:605995..607749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02060.1 ID=NO16G02060.1|Name=NO16G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at chr16:605995..607749- (Nannochloropsis oceanica)
GGAGGTGGGCCGACAAAAGCCTGTGCATTTATATGTAGTGCATGAAGGGT
TATTGAATGACGACATTCTGCTGTAAATGAATCGATGCCTTGTACTGGCA
TTTGGCATCTTTGCATGAGCTTGTAGGCAAAGGGGCGCGGGAGAAAGAGG
CCGTTATGATGGTTTAAGCGACGCATTTCTCACAGCGACCTCCCGACTCC
TGCAGCTAAGCCCAAGGCATCTCTCTATTCTATACTTAAAACAACACAAG
CCACAGGACATTCATCGGTATGAGAATAAGAAATGTATGAATCTCGTACT
GATGGCTACGCCAGTTGCTTTCGGTGTGGGTGCCACGGGCCTGCTGCATT
ACCTGGCTAGATACTCATCTACGTCCCAGCGCCAATAGACACCTCATTTC
TTGCCAAAAAACATACACACCCAAACATAACGTAGGAATCATCCATGATG
ATGCTTGCAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTT
GGCGCGTGCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCCCTCATC
ATCTTCACCCCAGCAGCACCACAACCAATACTGCGATAGCCTCTGCACTT
GGTAGCCGTCGGCACATTTCGGACAAACTTTTTATTCGAAGTACGTTGTG
AAGTGTTGAAAATGCTCTTGATTTAGTGGACGTGCAGAATTATGAGGTGA
GCGCACGTGACTCATACTTCCCCCGCCCTCCCCCCTTTTTGACCATACGC
CCACAGTTGTCCCTGAATCCACCACCACCGACTCTCTCCACGACTTCTTC
CGTTCCTATGGGCCTATCCGCGACGGTACGTACACTCTCATTCCTTCTTT
GTTTCGTGAGTCAAATTGACTCATCCTTCTTTCCTCCTTTCCCTGTCAAA
CCACCTTGGAACAGTGAGGATTGTGACCCCACCACGAGAAGACCGCCCGC
CTTATGCTTTCGTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATG
GAGGAAATGGAATTTAGGGTACGGCTTGTTCAGTTTGTATATCTGTGTGT
ATTTCTATGTTATGTATGCGTGTATCTGTGGGCGTGCATGTATGTACGCG
TCTTTGGTGAGGTACAATGCAAGCGGGAGAGTCACCGCCAAGAAACTAAC
CAATTTTCAATCTCCACCTCTCAACACCACGTAAACGACCACCCGCACAG
CGTTTCGCGGGCCGTCTTATTTTCCCCATTTTCCACGCCGAGAAGAGTAG
CAACAACAGCAGCGGAGGTGTTCGTGGTGGTTGGGGCAGCAAGGACGGAG
ATCGACGTGGCCGCGACAGGAGGAACCAAGGAAAGGACTACTATTACAAC
AGGGACAGTAGAGGAGGAAAGGGTGGAGTGGAAGGGTATCAGAACTCGAC
GTCGCTCAACAGCAGTAACAGTACGGATCGAAAAGGTCATCAGCAGCCGC
AATATCAACACCAGCACCAACACCAGCATCAAAATGAACAACGAAGACAG
AACCAGAGACAGCCGGCAGTTGCTGAGAGTGGGGAAAGATGGGCTCAGAG
CACTGCTGCTGTTGCTGCTTCGTCGGCAGAGACGCCAGCGGTGGCGGAAG
ATCTAGAAGGAACATTTACTTCTGGCAAAAGCGGGACCGATACCCAAGGG
CAGCCAACAGGGAAGAATAGTGGGAAGAAAAGGGGTTGGTACCGGAAGAA
GAAGCGGCAAGCAGAGGGAGGGGGAGGAGGAGGCGGAGGGGGAGGGGGGG
AGTGA
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Coding sequence (CDS) from alignment at chr16:605995..607749-

>NO16G02060.1 ID=NO16G02060.1|Name=NO16G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr16:605995..607749- (Nannochloropsis oceanica)
ATGATGATGCTTGCAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCG
TTTGTTGGCGCGTGCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCC
CTCATCATCTTCACCCCAGCAGCACCACAACCAATACTGCGATAGCCTCT
GCACTTGGTAGCCGTCGGCACATTTCGGACAAACTTTTTATTCGAATTGT
CCCTGAATCCACCACCACCGACTCTCTCCACGACTTCTTCCGTTCCTATG
GGCCTATCCGCGACGTGAGGATTGTGACCCCACCACGAGAAGACCGCCCG
CCTTATGCTTTCGTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGAT
GGAGGAAATGGAATTTAGGCGTTTCGCGGGCCGTCTTATTTTCCCCATTT
TCCACGCCGAGAAGAGTAGCAACAACAGCAGCGGAGGTGTTCGTGGTGGT
TGGGGCAGCAAGGACGGAGATCGACGTGGCCGCGACAGGAGGAACCAAGG
AAAGGACTACTATTACAACAGGGACAGTAGAGGAGGAAAGGGTGGAGTGG
AAGGGTATCAGAACTCGACGTCGCTCAACAGCAGTAACAGTACGGATCGA
AAAGGTCATCAGCAGCCGCAATATCAACACCAGCACCAACACCAGCATCA
AAATGAACAACGAAGACAGAACCAGAGACAGCCGGCAGTTGCTGAGAGTG
GGGAAAGATGGGCTCAGAGCACTGCTGCTGTTGCTGCTTCGTCGGCAGAG
ACGCCAGCGGTGGCGGAAGATCTAGAAGGAACATTTACTTCTGGCAAAAG
CGGGACCGATACCCAAGGGCAGCCAACAGGGAAGAATAGTGGGAAGAAAA
GGGGTTGGTACCGGAAGAAGAAGCGGCAAGCAGAGGGAGGGGGAGGAGGA
GGCGGAGGGGGAGGGGGGGAGTGA
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Synonyms
Publications