NO16G02040, NO16G02040 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G02040
Unique Name	NO16G02040
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3571
Alignment location	chr16:597781..601351 -

Link to JBrowse

Properties


Property Name	Value
Description	Vacuolar h atpase b subunit

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:597781..601351 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR022879	V-ATPase_su_B/beta
IPR000194	ATPase_F1/V1/A1_a/bsu_nucl-bd

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process
GO:0006810	transport

Homology

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BLAST of NO16G02040 vs. NCBI_GenBank
Match: EWM23914.1 (vacuolar h+ atpase b subunit [Nannochloropsis gaditana])

HSP 1 Score: 672.2 bits (1733), Expect = 9.100e-190
Identity = 338/347 (97.41%), Postives = 341/347 (98.27%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRTAPGVGAGG 348
            MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  DSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYER+MHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTR+DHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGST+NRTVFESLDLAWSLLRIFPRDLLKKITK ELNTYYARRTA G G GG
Sbjct:  215 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDSLDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYEREMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRNDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTANRTVFESLDLAWSLLRIFPRDLLKKITKNELNTYYARRTAAGAGVGG 561

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BLAST of NO16G02040 vs. NCBI_GenBank
Match: GAX13748.1 (V-type H+-transporting ATPase subunit B [Fistulifera solaris])

HSP 1 Score: 602.8 bits (1553), Expect = 6.800e-169
Identity = 295/338 (87.28%), Postives = 318/338 (94.08%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARR 339
            MIQTGISAIDVMNS+ARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  D H+DNF +VFGAMGVNMETARFFR+ FEESGAMQR+ LFLNLANDPTIERIITPRLALTTAEYLAYERD+HVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGR+VG+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDR LH + IFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYA+YA+GKDV AMKAVVGEEALS+EDHLYL F+++FEGK+I+QG    RT+FESLDLAWS+LR FP++LLKKI KK L+ YYARR
Sbjct:  153 MIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDTQDGHEDNFAIVFGAMGVNMETARFFRSDFEESGAMQRTALFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFISQGPYQARTIFESLDLAWSILRAFPKELLKKIPKKTLDQYYARR 490

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BLAST of NO16G02040 vs. NCBI_GenBank
Match: GAX21834.1 (V-type H+-transporting ATPase subunit B [Fistulifera solaris])

HSP 1 Score: 602.4 bits (1552), Expect = 8.800e-169
Identity = 294/338 (86.98%), Postives = 318/338 (94.08%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARR 339
            MIQTGISAIDVMNS+ARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  D H+DNF +VFGAMGVNMETARFFR+ FEESGAMQR+ LFLNLANDPTIERIITPRLALTTAEYLAYERD+HVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGR+VG+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDR LH + IFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYA+YA+GKDV AMKAVVGEEALS+EDHLYL F+++FEGK+++QG    RT+FESLDLAWS+LR FP++LLKKI KK L+ YYARR
Sbjct:  153 MIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDTQDGHEDNFAIVFGAMGVNMETARFFRSDFEESGAMQRTALFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFVSQGPYQARTIFESLDLAWSILRAFPKELLKKIPKKTLDQYYARR 490

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BLAST of NO16G02040 vs. NCBI_GenBank
Match: EJK59483.1 (hypothetical protein THAOC_20286, partial [Thalassiosira oceanica])

HSP 1 Score: 600.9 bits (1548), Expect = 2.600e-168
Identity = 294/340 (86.47%), Postives = 320/340 (94.12%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRTA 341
            MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  D+H+DNF +VFGAMGVNMETARFFR+ FEESGAMQR+ LFLNLANDPTIERIITPRLALTTAEYLAYERD+HVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGR+VG+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDR LH + IFPPINVLPSLSRLMKSAIGEGMTR+DHGSVSNQLYA+YA+GKDV AMKAVVGEEALS+EDHLYL F+++FE K+++QG    RT+FESLDLAWS+LR FP++LLKKI KK L+ YYARR+A
Sbjct:  121 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDTTDAHEDNFAIVFGAMGVNMETARFFRSDFEESGAMQRTALFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRNDHGSVSNQLYASYAMGKDVLAMKAVVGEEALSMEDHLYLSFLERFESKFVSQGPYQARTIFESLDLAWSILRAFPKELLKKIPKKTLDQYYARRSA 460

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BLAST of NO16G02040 vs. NCBI_GenBank
Match: EJK62984.1 (hypothetical protein THAOC_16387 [Thalassiosira oceanica])

HSP 1 Score: 600.9 bits (1548), Expect = 2.600e-168
Identity = 294/340 (86.47%), Postives = 320/340 (94.12%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRTA 341
            MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  D+H+DNF +VFGAMGVNMETARFFR+ FEESGAMQR+ LFLNLANDPTIERIITPRLALTTAEYLAYERD+HVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGR+VG+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDR LH + IFPPINVLPSLSRLMKSAIGEGMTR+DHGSVSNQLYA+YA+GKDV AMKAVVGEEALS+EDHLYL F+++FE K+++QG    RT+FESLDLAWS+LR FP++LLKKI KK L+ YYARR+A
Sbjct:  154 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDTTDAHEDNFAIVFGAMGVNMETARFFRSDFEESGAMQRTALFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRNDHGSVSNQLYASYAMGKDVLAMKAVVGEEALSMEDHLYLSFLERFESKFVSQGPYQARTIFESLDLAWSILRAFPKELLKKIPKKTLDQYYARRSA 493

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BLAST of NO16G02040 vs. NCBI_GenBank
Match: XP_002289999.1 (vacuolar ATPase [Thalassiosira pseudonana CCMP1335] >EED93536.1 vacuolar ATPase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 600.1 bits (1546), Expect = 4.400e-168
Identity = 294/338 (86.98%), Postives = 318/338 (94.08%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARR 339
            MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  DSH++NF +VFGAMGVNMETARFFR+ FEESGAMQR+ LFLNLANDPTIERIITPRLALTTAEYLAYERD+HVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGR+VG+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDR LH + IFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYA+YA+GKDV AMKAVVGEEALS+EDHLYL F+++FE K+++QG    RT+FESLDLAWS+LR FP++LLKKI KK L+ YYARR
Sbjct:  155 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDTTDSHEENFAIVFGAMGVNMETARFFRSDFEESGAMQRTALFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLHTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYASYAMGKDVLAMKAVVGEEALSMEDHLYLSFLERFESKFVSQGPYQARTIFESLDLAWSILRAFPKELLKKIPKKTLDQYYARR 492

[Close]

BLAST of NO16G02040 vs. NCBI_GenBank
Match: XP_008906613.1 (V-type proton ATPase subunit B, isoform [Phytophthora parasitica INRA-310] >ETI45888.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica P1569] >ETK85843.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica] >ETL92371.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica] >ETM45689.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica] >ETN08325.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica INRA-310] >ETO74559.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica P1976] >ETP15719.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica CJ01A1] >ETP43753.1 V-type proton ATPase subunit B, isoform [Phytophthora parasitica P10297])

HSP 1 Score: 597.4 bits (1539), Expect = 2.800e-167
Identity = 289/339 (85.25%), Postives = 314/339 (92.63%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRT 340
            MIQTGISAIDVMNS+ARGQKIP+FSAAGLPHNE+AAQI RQA LV+ KD  DSHDDNF +VFGAMGVNMETARFFR  FEESG+MQ++ LF+NLANDPTIERI+TPRLALTTAEYLAYERDMHVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLST+YERAGR+ G+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIY+DR LHNR+IFPPINVLPSLSRLMKSAIGEGMTRDDH +VSNQLYA+YA GKDV AMKAVVGEEALSLEDHLYL+F DKFEGK+I QG   +R +FESLDLAWSL R FP++LLKKI KK L+TYYARRT
Sbjct:  149 MIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAAQIVRQAGLVQRKDVVDSHDDNFAIVFGAMGVNMETARFFRNDFEESGSMQKTALFMNLANDPTIERIVTPRLALTTAEYLAYERDMHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTLYERAGRVTGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFTDKFEGKFIAQGPYQSRDIFESLDLAWSLFRAFPKELLKKIPKKHLDTYYARRT 487

[Close]

BLAST of NO16G02040 vs. NCBI_GenBank
Match: ETL39272.1 (V-type proton ATPase subunit B, isoform [Phytophthora parasitica])

HSP 1 Score: 597.4 bits (1539), Expect = 2.800e-167
Identity = 289/339 (85.25%), Postives = 314/339 (92.63%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRT 340
            MIQTGISAIDVMNS+ARGQKIP+FSAAGLPHNE+AAQI RQA LV+ KD  DSHDDNF +VFGAMGVNMETARFFR  FEESG+MQ++ LF+NLANDPTIERI+TPRLALTTAEYLAYERDMHVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLST+YERAGR+ G+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIY+DR LHNR+IFPPINVLPSLSRLMKSAIGEGMTRDDH +VSNQLYA+YA GKDV AMKAVVGEEALSLEDHLYL+F DKFEGK+I QG   +R +FESLDLAWSL R FP++LLKKI KK L+TYYARRT
Sbjct:  149 MIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAAQIVRQAGLVQRKDVVDSHDDNFAIVFGAMGVNMETARFFRNDFEESGSMQKTALFMNLANDPTIERIVTPRLALTTAEYLAYERDMHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTLYERAGRVTGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSTVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFTDKFEGKFIAQGPYQSRDIFESLDLAWSLFRAFPKELLKKIPKKHLDTYYARRT 487

[Close]

BLAST of NO16G02040 vs. NCBI_GenBank
Match: XP_002998300.1 (V-type proton ATPase subunit B, putative [Phytophthora infestans T30-4] >EEY70646.1 V-type proton ATPase subunit B, putative [Phytophthora infestans T30-4])

HSP 1 Score: 597.4 bits (1539), Expect = 2.800e-167
Identity = 289/339 (85.25%), Postives = 314/339 (92.63%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRT 340
            MIQTGISAIDVMNS+ARGQKIP+FSAAGLPHNE+AAQI RQA LV+ KD  DSHDDNF +VFGAMGVNMETARFFR  FEESG+MQ++ LF+NLANDPTIERI+TPRLALTTAEYLAYERDMHVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLST+YERAGR+ G+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIY+DR LHNR+IFPPINVLPSLSRLMKSAIGEGMTRDDH +VSNQLYA+YA GKDV AMKAVVGEEALSLEDHLYL+F DKFEGK+I QG   +R +FESLDLAWSL R FP++LLKKI KK L+TYYARRT
Sbjct:  149 MIQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAAQIVRQAGLVQRKDVVDSHDDNFAIVFGAMGVNMETARFFRNDFEESGSMQKTALFMNLANDPTIERIVTPRLALTTAEYLAYERDMHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTLYERAGRVTGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFTDKFEGKFIAQGPYQSRDIFESLDLAWSLFRAFPKELLKKIPKKHLDTYYARRT 487

[Close]

BLAST of NO16G02040 vs. NCBI_GenBank
Match: XP_024572175.1 (v-type proton atpase subunit isoform [Plasmopara halstedii] >CEG35806.1 v-type proton atpase subunit isoform [Plasmopara halstedii])

HSP 1 Score: 596.3 bits (1536), Expect = 6.300e-167
Identity = 288/339 (84.96%), Postives = 314/339 (92.63%), Query Frame = 0

Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRT 340
            M+QTGISAIDVMNS+ARGQKIP+FSAAGLPHNE+AAQI RQA LV+ KD  DSHDDNF +VFGAMGVNMETARFFR  FEESG+MQ++ LF+NLANDPTIERI+TPRLALTTAEYLAYERDMHVL+ILTDMSSY DALREVSAAREEVPGRRGYPGYMYTDLST+YERAGR+ G+NGSITQLPILTMPNDDITHPIPDLTGYITEGQIY+DR LHNR+IFPPINVLPSLSRLMKSAIGEGMTRDDH +VSNQLYA+YA GKDV AMKAVVGEEALSLEDHLYL+F DKFEGK+I QG   +R +FESLDLAWSL R FP++LLKKI KK L+TYYARRT
Sbjct:  149 MMQTGISAIDVMNSIARGQKIPLFSAAGLPHNEIAAQIVRQAGLVQRKDVVDSHDDNFAIVFGAMGVNMETARFFRNDFEESGSMQKTALFMNLANDPTIERIVTPRLALTTAEYLAYERDMHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTLYERAGRVTGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIFPPINVLPSLSRLMKSAIGEGMTRDDHSAVSNQLYASYATGKDVQAMKAVVGEEALSLEDHLYLKFTDKFEGKFIAQGPYQSRDIFESLDLAWSLFRAFPKELLKKIPKKHLDTYYARRT 487

The following BLAST results are available for this feature:

BLAST of NO16G02040 vs. NCBI_GenBank

BLAST of NO16G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM23914.1	9.100e-190	97.41	vacuolar h+ atpase b subunit [Nannochloropsis gadi...	[more]
GAX13748.1	6.800e-169	87.28	V-type H+-transporting ATPase subunit B [Fistulife...	[more]
GAX21834.1	8.800e-169	86.98	V-type H+-transporting ATPase subunit B [Fistulife...	[more]
EJK59483.1	2.600e-168	86.47	hypothetical protein THAOC_20286, partial [Thalass...	[more]
EJK62984.1	2.600e-168	86.47	hypothetical protein THAOC_16387 [Thalassiosira oc...	[more]
XP_002289999.1	4.400e-168	86.98	vacuolar ATPase [Thalassiosira pseudonana CCMP1335...	[more]
XP_008906613.1	2.800e-167	85.25	V-type proton ATPase subunit B, isoform [Phytophth...	[more]
ETL39272.1	2.800e-167	85.25	V-type proton ATPase subunit B, isoform [Phytophth...	[more]
XP_002998300.1	2.800e-167	85.25	V-type proton ATPase subunit B, putative [Phytopht...	[more]
XP_024572175.1	6.300e-167	84.96	v-type proton atpase subunit isoform [Plasmopara h...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL153	nonsL153	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR018	ncniR018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR035	ngnoR035	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003217	NSK003217	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO16G02040.1	NO16G02040.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593732	gene_6095	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100113g20	gene6564	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO16G02040.1	NO16G02040.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO16G02040 ID=NO16G02040|Name=NO16G02040|organism=Nannochloropsis oceanica|type=gene|length=3571bp
GGCTCCCCATGGTCTTCCTTTCAAGTCTCGCGTCTGTCTTTGCGACACAC
TTGATCCGATTCGTTTCTTTTCAGCCACATCACAGCGGTCATATGGCTAT
ACATGTACTCTCGAAAAGCAGAGAGGAAAGCACCCTGCATTTCACTCGCA
CATCAAATTTACCAAGGAAAATTACAAAGCGAGGAACCCCCACTCCTTTC
TTAATTCAGTCATAGCTCTCATGCGCCCTCGTCTCACACCCTGGTGCATT
CTCATCTTCAGAGCTACAACACCACCAATGAAATACAACGCGTCGCCCCT
CCCCATTGTTTTGCCCAGGTGGCAGCCATCGTTGGGCCGTCTCGCCTGTG
AAGCTGTGGGGATGGTACCGACAGGCCCGCGCGTTGTTTGTCTTGACGTT
GAACTGCGTGTGACACATCTTGCATGTCCGAAGGAGGGCGGACGGTGGTA
ATGCCTTCTCCAAGGTAACCTTGAGCCCGTCCATGAGCCTATCGTTTCTC
CACGAAAGTAGTAAGTAGGATGGGTGTTATACAGGATAAACGAGCGTTTC
CCAAGGCCAAGGCTTGTCAGAAAACTATTTTGCTGTAGACAAGCCGATGA
CTATATCACTGTAGAATTACGAATTGGCACAGTGGTCCCTGTGTTGTGAG
GATGCATGTCGTTATGCACTTAATGCATACATGTGTGCGTTTGCGTTTGG
GCAAAACAAAGAGGACATGCATTGTCTGTTCGGCGAGTGAAAGAAAAACA
AGAGCGGAAAGGGAGACGAGATGAGTCGTCAAAGATTCTTGCCCAGTCGT
ATGCCTCCACACGCTTCCCGCGCCACACCTACCACCCATGCCATTCTCAA
TTCGATCAAGCATAATGGCGGCTTGATGGTGGGGATGGTAGCCTCGGGGG
GGGCAGGTCATGGGGGCATCCAACCTGTCTCATCTTAGGCAATAGGAGGC
AATAGACAGGATCAATCTTAGTTTTACCCCCGCCTGATCTCTTACACGCC
GCACACCCAACACTACCCACCTGACACAGGAACAGAGAAGTTATGGCTCC
TCTCTCGACGGCGGATGTGGTCAAGAGCTACAGCCTCAACCCCCGGATCC
AGgtacgtcttgcccctgcgcgtgccgcgatgatgcagtcgaagctggga
cggagggagggagcgccgtgtgtctgtttccatgtccatcgtgtcgggcc
tgcaccctacggcaagcacatggctgcttagggctacgtcgaggacgatg
agatgtgtgcgggtttgactttgtggaggcgtcctggacgggagccgtcc
tggacgcggtaaagcaccgagcagcaagaacagtaccccatcgtcatcat
cgccatcccaccataagcagcattaacaagcctagaattcccactctccc
gctccagtgaatgctgctcctatactggacttgctttctgtccctccgtc
tccactcatctttcccctctccgtctatccttgtctttcccctgaatagT
ACTCTACCATTCAAGGCGTGAACGGTCCGTTGGTCATCCTCGACAATGTC
AAGCTGCCCAAGTTCGCCGAGATCGTCAATCTGACATTGGGAAACGGGGA
GAAGCGCCAGGGTCAAGTCCTGGAGGTGGCGGGCAAGAAGGCCGTCGTCC
AGGTGTTTGAGGGCACTTCCGgtacgtgagaattgagggaggggagagag
ttgaaaggaaggtggggctctacttcaacgaggagtgccatggacgcgtc
atctgtctctacttaccttggtgaatgcaacacgcactcactgaccgcac
ccttttctccctctccctcccccttctacagGCATTGACAACCGTCACAC
CACAGCCGAATTCACCGGCGACGTCCTCCGTACCGCCGTCTCCGAAGAGG
TCCTCGGCCGATCCTTCAACGGTTCGGGCAAAGTCATCGATGGCGCCCCC
CTGTCCTCCCAGAGCAATTCCTCGACATCAACGGGCAGCCGATCAACCCT
TCATGCCGTGACTACCCGAGGGCCATGATCCAGACCGGGATCTCCGCCAT
CGACGTCATGAACTCGGTTGCCCGTGGCCAGAAAATTCCCATTTTCTCTG
CTGCTGGTTTGCCCCATAATGAAGTGGCGGCTCAGATTGCCCGCCAGGCG
TCGTTGGTCAAGCTGAAGGATTGCTATGATTCTCACGATGATAATTTTAC
GGTGGTCTTCGGCGCCATGGGCGTGAATATGGAGACGGCCCGTTTCTTCC
GAACCTCGTTCGAGGAGTCTGGGGCAATGCAGCGCTCAGTGCTCTTTCTC
AACTTGGCAAATGATCCGACTATTGAACGCATTATTACTCCCCGTTTGGC
CTTAACCACGGCGGAGTATTTGGCGTACGAGCGGGACATGCACGTGCTGA
TCATTTTGACCGATATGTCCTCCTATTGCGATGCCTTGCGTGAAGTGTCT
GCGGCTCGTGAGGAGGTTCCTGGTCGTCGTGGGTATCCGGGGTACATGTA
TACGGATCTGAGCACGATCTACGAGAGGGCTGGCAGGATTGTAGGGAAGA
ATGGGTCAATCACCCAGTTGCCTATCCTGACGATGCCCAACGACGATATC
ACGCATCCGATTCCCGACTTGACGGGCTATATAACGGAGGGGCAGATTTA
CCTGGATCGGGCATTGCACAACCGGGAGATTTTCCCGCCGATTAATGTGT
TGCCATCCTTGAGTCGATTGATGAAGTCGGCTATTGGGGAGGGAATGACA
CGCGATGACCACGGGTCGGTCTCGAATCAGTTGTATGCGAATTATGCGCT
TGGGAAGGATGTGGCGGCGATGAAGGCAGTTGTGGGCGAGGAGGCTCTGT
CGCTTGAGGACCATCTGTACCTGCAATTCGTGGATAAGTTCGAAGGGAAG
TACATTAATCAGGGGAGTACCAGCAACAGGACTGTGTTCGAATCGCTCGA
TCTGGCGTGGTCGCTGCTGCGTATTTTCCCGCGCGATTTGTTGAAGAAGA
TCACGAAGAAGGAGCTGAACACGTACTACGCACGCAGGACTGCTCCTGGG
GTAGGGGCGGGGGGGGCAGGAGGAGGCCAAGACAGGTAAGTGGTGGGGGA
AGCAAGGAGAAGAGAGGAGGGAGGAGACAATAATGGGAGAGAGGGGGGGT
AATGTTGATAAAGATTTCTCTACTTAGTACATGATTGTCGTGTATGTGTG
GAGGGGTTGGTGTGTTTTGTGCGGGAACGTGCGAGTTGGGAGCCTAGGGA
AGAGGAGGGAGGCAGTGACTGAGGGAGGGAGGGAGAAGGCACGAGGTTTA
GAGTTGTTGAAGATAGAGAGTATTATCAGTGAACAATAATGGAGCACACC
AAATTTCAATTTCCTCGTGGAAAAATGAAATTTGAAGTAGGTTGGACAAC
GAAATAGCTGTGACAGCGAAGAAGAAAATACTGGGAAAAGGGGAAGAAGA
GTGTGGTTTCAAGTCTCGGTTTTTATACAAGAAAAGCAGCGAACCAAAAA
CAAGAACACAACAACAGCAAAAAAGAAGCAAACTATGAGCGGCCATCGCA
GCCTGAGAGACGAGAAATAAA

protein sequence of NO16G02040.1

>NO16G02040.1-protein ID=NO16G02040.1-protein|Name=NO16G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDC
YDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTI
ERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLT
GYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVS
NQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTS
NRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRTAPGVGAGGAGG
GQDR*

Synonyms

Publications