NO16G02040.1, NO16G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02040.1
Unique NameNO16G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3014
Alignment locationchr16:597781..601351 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:597781..601351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02040.1 vs.
Match: EWM23914.1 (vacuolar h+ atpase b subunit [Nannochloropsis gaditana])

HSP 1 Score: 672.2 bits (1733), Expect = 9.100e-190
Identity = 338/347 (97.41%), Postives = 341/347 (98.27%), Query Frame = 0 
Query:    1 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDCYDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTSNRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRTAPGVGAGG 348
            MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKD  DSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYER+MHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTR+DHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGST+NRTVFESLDLAWSLLRIFPRDLLKKITK ELNTYYARRTA G G GG
Sbjct:  215 MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDSLDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTIERIITPRLALTTAEYLAYEREMHVLIILTDMSSYCDALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRNDHGSVSNQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTANRTVFESLDLAWSLLRIFPRDLLKKITKNELNTYYARRTAAGAGVGG 561
The following BLAST results are available for this feature:
BLAST of NO16G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23914.19.100e-19097.41vacuolar h+ atpase b subunit [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02040NO16G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02040.1NO16G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02040.1.cds1NO16G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02040.1 ID=NO16G02040.1|Name=NO16G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3014bp
GGCTCCCCATGGTCTTCCTTTCAAGTCTCGCGTCTGTCTTTGCGACACAC
TTGATCCGATTCGTTTCTTTTCAGCCACATCACAGCGGTCATATGGCTAT
ACATGTACTCTCGAAAAGCAGAGAGGAAAGCACCCTGCATTTCACTCGCA
CATCAAATTTACCAAGGAAAATTACAAAGCGAGGAACCCCCACTCCTTTC
TTAATTCAGTCATAGCTCTCATGCGCCCTCGTCTCACACCCTGGTGCATT
CTCATCTTCAGAGCTACAACACCACCAATGAAATACAACGCGTCGCCCCT
CCCCATTGTTTTGCCCAGGTGGCAGCCATCGTTGGGCCGTCTCGCCTGTG
AAGCTGTGGGGATGGTACCGACAGGCCCGCGCGTTGTTTGTCTTGACGTT
GAACTGCGTGTGACACATCTTGCATGTCCGAAGGAGGGCGGACGGTGGTA
ATGCCTTCTCCAAGGTAACCTTGAGCCCGTCCATGAGCCTATCGTTTCTC
CACGAAAGTAGTAAGTAGGATGGGTGTTATACAGGATAAACGAGCGTTTC
CCAAGGCCAAGGCTTGTCAGAAAACTATTTTGCTGTAGACAAGCCGATGA
CTATATCACTGTAGAATTACGAATTGGCACAGTGGTCCCTGTGTTGTGAG
GATGCATGTCGTTATGCACTTAATGCATACATGTGTGCGTTTGCGTTTGG
GCAAAACAAAGAGGACATGCATTGTCTGTTCGGCGAGTGAAAGAAAAACA
AGAGCGGAAAGGGAGACGAGATGAGTCGTCAAAGATTCTTGCCCAGTCGT
ATGCCTCCACACGCTTCCCGCGCCACACCTACCACCCATGCCATTCTCAA
TTCGATCAAGCATAATGGCGGCTTGATGGTGGGGATGGTAGCCTCGGGGG
GGGCAGGTCATGGGGGCATCCAACCTGTCTCATCTTAGGCAATAGGAGGC
AATAGACAGGATCAATCTTAGTTTTACCCCCGCCTGATCTCTTACACGCC
GCACACCCAACACTACCCACCTGACACAGGAACAGAGAAGTTATGGCTCC
TCTCTCGACGGCGGATGTGGTCAAGAGCTACAGCCTCAACCCCCGGATCC
AGTACTCTACCATTCAAGGCGTGAACGGTCCGTTGGTCATCCTCGACAAT
GTCAAGCTGCCCAAGTTCGCCGAGATCGTCAATCTGACATTGGGAAACGG
GGAGAAGCGCCAGGGTCAAGTCCTGGAGGTGGCGGGCAAGAAGGCCGTCG
TCCAGGTGTTTGAGGGCACTTCCGGCATTGACAACCGTCACACCACAGCC
GAATTCACCGGCGACGTCCTCCGTACCGCCGTCTCCGAAGAGGTCCTCGG
CCGATCCTTCAACGGTTCGGGCAAAGTCATCGATGGCGCCCCCCTGTCCT
CCCAGAGCAATTCCTCGACATCAACGGGCAGCCGATCAACCCTTCATGCC
GTGACTACCCGAGGGCCATGATCCAGACCGGGATCTCCGCCATCGACGTC
ATGAACTCGGTTGCCCGTGGCCAGAAAATTCCCATTTTCTCTGCTGCTGG
TTTGCCCCATAATGAAGTGGCGGCTCAGATTGCCCGCCAGGCGTCGTTGG
TCAAGCTGAAGGATTGCTATGATTCTCACGATGATAATTTTACGGTGGTC
TTCGGCGCCATGGGCGTGAATATGGAGACGGCCCGTTTCTTCCGAACCTC
GTTCGAGGAGTCTGGGGCAATGCAGCGCTCAGTGCTCTTTCTCAACTTGG
CAAATGATCCGACTATTGAACGCATTATTACTCCCCGTTTGGCCTTAACC
ACGGCGGAGTATTTGGCGTACGAGCGGGACATGCACGTGCTGATCATTTT
GACCGATATGTCCTCCTATTGCGATGCCTTGCGTGAAGTGTCTGCGGCTC
GTGAGGAGGTTCCTGGTCGTCGTGGGTATCCGGGGTACATGTATACGGAT
CTGAGCACGATCTACGAGAGGGCTGGCAGGATTGTAGGGAAGAATGGGTC
AATCACCCAGTTGCCTATCCTGACGATGCCCAACGACGATATCACGCATC
CGATTCCCGACTTGACGGGCTATATAACGGAGGGGCAGATTTACCTGGAT
CGGGCATTGCACAACCGGGAGATTTTCCCGCCGATTAATGTGTTGCCATC
CTTGAGTCGATTGATGAAGTCGGCTATTGGGGAGGGAATGACACGCGATG
ACCACGGGTCGGTCTCGAATCAGTTGTATGCGAATTATGCGCTTGGGAAG
GATGTGGCGGCGATGAAGGCAGTTGTGGGCGAGGAGGCTCTGTCGCTTGA
GGACCATCTGTACCTGCAATTCGTGGATAAGTTCGAAGGGAAGTACATTA
ATCAGGGGAGTACCAGCAACAGGACTGTGTTCGAATCGCTCGATCTGGCG
TGGTCGCTGCTGCGTATTTTCCCGCGCGATTTGTTGAAGAAGATCACGAA
GAAGGAGCTGAACACGTACTACGCACGCAGGACTGCTCCTGGGGTAGGGG
CGGGGGGGGCAGGAGGAGGCCAAGACAGGTAAGTGGTGGGGGAAGCAAGG
AGAAGAGAGGAGGGAGGAGACAATAATGGGAGAGAGGGGGGGTAATGTTG
ATAAAGATTTCTCTACTTAGTACATGATTGTCGTGTATGTGTGGAGGGGT
TGGTGTGTTTTGTGCGGGAACGTGCGAGTTGGGAGCCTAGGGAAGAGGAG
GGAGGCAGTGACTGAGGGAGGGAGGGAGAAGGCACGAGGTTTAGAGTTGT
TGAAGATAGAGAGTATTATCAGTGAACAATAATGGAGCACACCAAATTTC
AATTTCCTCGTGGAAAAATGAAATTTGAAGTAGGTTGGACAACGAAATAG
CTGTGACAGCGAAGAAGAAAATACTGGGAAAAGGGGAAGAAGAGTGTGGT
TTCAAGTCTCGGTTTTTATACAAGAAAAGCAGCGAACCAAAAACAAGAAC
ACAACAACAGCAAAAAAGAAGCAAACTATGAGCGGCCATCGCAGCCTGAG
AGACGAGAAATAAA
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protein sequence of NO16G02040.1

>NO16G02040.1-protein ID=NO16G02040.1-protein|Name=NO16G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKLKDC
YDSHDDNFTVVFGAMGVNMETARFFRTSFEESGAMQRSVLFLNLANDPTI
ERIITPRLALTTAEYLAYERDMHVLIILTDMSSYCDALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRIVGKNGSITQLPILTMPNDDITHPIPDLT
GYITEGQIYLDRALHNREIFPPINVLPSLSRLMKSAIGEGMTRDDHGSVS
NQLYANYALGKDVAAMKAVVGEEALSLEDHLYLQFVDKFEGKYINQGSTS
NRTVFESLDLAWSLLRIFPRDLLKKITKKELNTYYARRTAPGVGAGGAGG
GQDR*
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mRNA from alignment at chr16:597781..601351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02040.1 ID=NO16G02040.1|Name=NO16G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3571bp|location=Sequence derived from alignment at chr16:597781..601351- (Nannochloropsis oceanica)
GGCTCCCCATGGTCTTCCTTTCAAGTCTCGCGTCTGTCTTTGCGACACAC
TTGATCCGATTCGTTTCTTTTCAGCCACATCACAGCGGTCATATGGCTAT
ACATGTACTCTCGAAAAGCAGAGAGGAAAGCACCCTGCATTTCACTCGCA
CATCAAATTTACCAAGGAAAATTACAAAGCGAGGAACCCCCACTCCTTTC
TTAATTCAGTCATAGCTCTCATGCGCCCTCGTCTCACACCCTGGTGCATT
CTCATCTTCAGAGCTACAACACCACCAATGAAATACAACGCGTCGCCCCT
CCCCATTGTTTTGCCCAGGTGGCAGCCATCGTTGGGCCGTCTCGCCTGTG
AAGCTGTGGGGATGGTACCGACAGGCCCGCGCGTTGTTTGTCTTGACGTT
GAACTGCGTGTGACACATCTTGCATGTCCGAAGGAGGGCGGACGGTGGTA
ATGCCTTCTCCAAGGTAACCTTGAGCCCGTCCATGAGCCTATCGTTTCTC
CACGAAAGTAGTAAGTAGGATGGGTGTTATACAGGATAAACGAGCGTTTC
CCAAGGCCAAGGCTTGTCAGAAAACTATTTTGCTGTAGACAAGCCGATGA
CTATATCACTGTAGAATTACGAATTGGCACAGTGGTCCCTGTGTTGTGAG
GATGCATGTCGTTATGCACTTAATGCATACATGTGTGCGTTTGCGTTTGG
GCAAAACAAAGAGGACATGCATTGTCTGTTCGGCGAGTGAAAGAAAAACA
AGAGCGGAAAGGGAGACGAGATGAGTCGTCAAAGATTCTTGCCCAGTCGT
ATGCCTCCACACGCTTCCCGCGCCACACCTACCACCCATGCCATTCTCAA
TTCGATCAAGCATAATGGCGGCTTGATGGTGGGGATGGTAGCCTCGGGGG
GGGCAGGTCATGGGGGCATCCAACCTGTCTCATCTTAGGCAATAGGAGGC
AATAGACAGGATCAATCTTAGTTTTACCCCCGCCTGATCTCTTACACGCC
GCACACCCAACACTACCCACCTGACACAGGAACAGAGAAGTTATGGCTCC
TCTCTCGACGGCGGATGTGGTCAAGAGCTACAGCCTCAACCCCCGGATCC
AGGTACGTCTTGCCCCTGCGCGTGCCGCGATGATGCAGTCGAAGCTGGGA
CGGAGGGAGGGAGCGCCGTGTGTCTGTTTCCATGTCCATCGTGTCGGGCC
TGCACCCTACGGCAAGCACATGGCTGCTTAGGGCTACGTCGAGGACGATG
AGATGTGTGCGGGTTTGACTTTGTGGAGGCGTCCTGGACGGGAGCCGTCC
TGGACGCGGTAAAGCACCGAGCAGCAAGAACAGTACCCCATCGTCATCAT
CGCCATCCCACCATAAGCAGCATTAACAAGCCTAGAATTCCCACTCTCCC
GCTCCAGTGAATGCTGCTCCTATACTGGACTTGCTTTCTGTCCCTCCGTC
TCCACTCATCTTTCCCCTCTCCGTCTATCCTTGTCTTTCCCCTGAATAGT
ACTCTACCATTCAAGGCGTGAACGGTCCGTTGGTCATCCTCGACAATGTC
AAGCTGCCCAAGTTCGCCGAGATCGTCAATCTGACATTGGGAAACGGGGA
GAAGCGCCAGGGTCAAGTCCTGGAGGTGGCGGGCAAGAAGGCCGTCGTCC
AGGTGTTTGAGGGCACTTCCGGTACGTGAGAATTGAGGGAGGGGAGAGAG
TTGAAAGGAAGGTGGGGCTCTACTTCAACGAGGAGTGCCATGGACGCGTC
ATCTGTCTCTACTTACCTTGGTGAATGCAACACGCACTCACTGACCGCAC
CCTTTTCTCCCTCTCCCTCCCCCTTCTACAGGCATTGACAACCGTCACAC
CACAGCCGAATTCACCGGCGACGTCCTCCGTACCGCCGTCTCCGAAGAGG
TCCTCGGCCGATCCTTCAACGGTTCGGGCAAAGTCATCGATGGCGCCCCC
CTGTCCTCCCAGAGCAATTCCTCGACATCAACGGGCAGCCGATCAACCCT
TCATGCCGTGACTACCCGAGGGCCATGATCCAGACCGGGATCTCCGCCAT
CGACGTCATGAACTCGGTTGCCCGTGGCCAGAAAATTCCCATTTTCTCTG
CTGCTGGTTTGCCCCATAATGAAGTGGCGGCTCAGATTGCCCGCCAGGCG
TCGTTGGTCAAGCTGAAGGATTGCTATGATTCTCACGATGATAATTTTAC
GGTGGTCTTCGGCGCCATGGGCGTGAATATGGAGACGGCCCGTTTCTTCC
GAACCTCGTTCGAGGAGTCTGGGGCAATGCAGCGCTCAGTGCTCTTTCTC
AACTTGGCAAATGATCCGACTATTGAACGCATTATTACTCCCCGTTTGGC
CTTAACCACGGCGGAGTATTTGGCGTACGAGCGGGACATGCACGTGCTGA
TCATTTTGACCGATATGTCCTCCTATTGCGATGCCTTGCGTGAAGTGTCT
GCGGCTCGTGAGGAGGTTCCTGGTCGTCGTGGGTATCCGGGGTACATGTA
TACGGATCTGAGCACGATCTACGAGAGGGCTGGCAGGATTGTAGGGAAGA
ATGGGTCAATCACCCAGTTGCCTATCCTGACGATGCCCAACGACGATATC
ACGCATCCGATTCCCGACTTGACGGGCTATATAACGGAGGGGCAGATTTA
CCTGGATCGGGCATTGCACAACCGGGAGATTTTCCCGCCGATTAATGTGT
TGCCATCCTTGAGTCGATTGATGAAGTCGGCTATTGGGGAGGGAATGACA
CGCGATGACCACGGGTCGGTCTCGAATCAGTTGTATGCGAATTATGCGCT
TGGGAAGGATGTGGCGGCGATGAAGGCAGTTGTGGGCGAGGAGGCTCTGT
CGCTTGAGGACCATCTGTACCTGCAATTCGTGGATAAGTTCGAAGGGAAG
TACATTAATCAGGGGAGTACCAGCAACAGGACTGTGTTCGAATCGCTCGA
TCTGGCGTGGTCGCTGCTGCGTATTTTCCCGCGCGATTTGTTGAAGAAGA
TCACGAAGAAGGAGCTGAACACGTACTACGCACGCAGGACTGCTCCTGGG
GTAGGGGCGGGGGGGGCAGGAGGAGGCCAAGACAGGTAAGTGGTGGGGGA
AGCAAGGAGAAGAGAGGAGGGAGGAGACAATAATGGGAGAGAGGGGGGGT
AATGTTGATAAAGATTTCTCTACTTAGTACATGATTGTCGTGTATGTGTG
GAGGGGTTGGTGTGTTTTGTGCGGGAACGTGCGAGTTGGGAGCCTAGGGA
AGAGGAGGGAGGCAGTGACTGAGGGAGGGAGGGAGAAGGCACGAGGTTTA
GAGTTGTTGAAGATAGAGAGTATTATCAGTGAACAATAATGGAGCACACC
AAATTTCAATTTCCTCGTGGAAAAATGAAATTTGAAGTAGGTTGGACAAC
GAAATAGCTGTGACAGCGAAGAAGAAAATACTGGGAAAAGGGGAAGAAGA
GTGTGGTTTCAAGTCTCGGTTTTTATACAAGAAAAGCAGCGAACCAAAAA
CAAGAACACAACAACAGCAAAAAAGAAGCAAACTATGAGCGGCCATCGCA
GCCTGAGAGACGAGAAATAAA
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Coding sequence (CDS) from alignment at chr16:597781..601351-

>NO16G02040.1 ID=NO16G02040.1|Name=NO16G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at chr16:597781..601351- (Nannochloropsis oceanica)
ATGATCCAGACCGGGATCTCCGCCATCGACGTCATGAACTCGGTTGCCCG
TGGCCAGAAAATTCCCATTTTCTCTGCTGCTGGTTTGCCCCATAATGAAG
TGGCGGCTCAGATTGCCCGCCAGGCGTCGTTGGTCAAGCTGAAGGATTGC
TATGATTCTCACGATGATAATTTTACGGTGGTCTTCGGCGCCATGGGCGT
GAATATGGAGACGGCCCGTTTCTTCCGAACCTCGTTCGAGGAGTCTGGGG
CAATGCAGCGCTCAGTGCTCTTTCTCAACTTGGCAAATGATCCGACTATT
GAACGCATTATTACTCCCCGTTTGGCCTTAACCACGGCGGAGTATTTGGC
GTACGAGCGGGACATGCACGTGCTGATCATTTTGACCGATATGTCCTCCT
ATTGCGATGCCTTGCGTGAAGTGTCTGCGGCTCGTGAGGAGGTTCCTGGT
CGTCGTGGGTATCCGGGGTACATGTATACGGATCTGAGCACGATCTACGA
GAGGGCTGGCAGGATTGTAGGGAAGAATGGGTCAATCACCCAGTTGCCTA
TCCTGACGATGCCCAACGACGATATCACGCATCCGATTCCCGACTTGACG
GGCTATATAACGGAGGGGCAGATTTACCTGGATCGGGCATTGCACAACCG
GGAGATTTTCCCGCCGATTAATGTGTTGCCATCCTTGAGTCGATTGATGA
AGTCGGCTATTGGGGAGGGAATGACACGCGATGACCACGGGTCGGTCTCG
AATCAGTTGTATGCGAATTATGCGCTTGGGAAGGATGTGGCGGCGATGAA
GGCAGTTGTGGGCGAGGAGGCTCTGTCGCTTGAGGACCATCTGTACCTGC
AATTCGTGGATAAGTTCGAAGGGAAGTACATTAATCAGGGGAGTACCAGC
AACAGGACTGTGTTCGAATCGCTCGATCTGGCGTGGTCGCTGCTGCGTAT
TTTCCCGCGCGATTTGTTGAAGAAGATCACGAAGAAGGAGCTGAACACGT
ACTACGCACGCAGGACTGCTCCTGGGGTAGGGGCGGGGGGGGCAGGAGGA
GGCCAAGACAGGTAA
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Synonyms
Publications