NO16G01870, NO16G01870 (gene) Nannochloropsis oceanica

Overview
NameNO16G01870
Unique NameNO16G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1466
Alignment locationchr16:547015..548480 -

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Properties
Property NameValue
Description60s ribosomal protein l35
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:547015..548480 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR036049Ribosomal_L29/L35_sf
IPR001854Ribosomal_L29
Homology
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: XP_005855084.1 (large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526] >EKU21268.1 large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526] >EWM23878.1 60s ribosomal protein l35 [Nannochloropsis gaditana])

HSP 1 Score: 181.4 bits (459), Expect = 2.500e-42
Identity = 107/125 (85.60%), Postives = 116/125 (92.80%), Query Frame = 0 
Query:   60 MVAGKIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            MVAGK+KAK+LRTK KA++     XXXXXXXX RVAKVTGGAASKLAKIK+VRKSIARVLTVYNQTQK+KLREKF GSKYMP+DLRRKKTRAIRRRLTKHE+GLKTVRAVKREQA PKRRYAL+A
Sbjct:    1 MVAGKLKAKDLRTKSKAEMVKQLEXXXXXXXXLRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: OQR86272.1 (60S ribosomal protein L35 [Achlya hypogyna])

HSP 1 Score: 135.2 bits (339), Expect = 2.100e-28
Identity = 77/121 (63.64%), Postives = 91/121 (75.21%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELR K K++L              RVAKVTGGAASKLAKIK+VRKSIARVLTVYNQTQK++LREK    K++P+DLR KKTRAIRR LTK E+ +KT++  K+E   PKRRYALKA
Sbjct:    3 QIKAHELRNKTKSELLAELDDFQQELAQLRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKARLREKLGNGKHVPVDLREKKTRAIRRALTKSEKAIKTLKQQKKEAYFPKRRYALKA 123
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: XP_008617164.1 (60S ribosomal protein L35 [Saprolegnia diclina VS20] >XP_012195117.1 60S ribosomal protein L35 [Saprolegnia parasitica CBS 223.65] >EQC29397.1 60S ribosomal protein L35 [Saprolegnia diclina VS20] >KDO34381.1 60S ribosomal protein L35 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 134.8 bits (338), Expect = 2.700e-28
Identity = 78/121 (64.46%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELR+K KA+L              RVAKVTGGAASKLAKIK VRKSIARVLTVYNQTQK +LREK    K++P+DLR KKTRAIRR LTK E+ +KT++  K+E   PKRRYALKA
Sbjct:    3 QIKAHELRSKTKAELLTELDDFQQELAQLRVAKVTGGAASKLAKIKTVRKSIARVLTVYNQTQKERLREKLGNGKHVPVDLREKKTRAIRRALTKSEKAIKTLKQQKKEAYFPKRRYALKA 123
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: XP_008611861.1 (60S ribosomal protein L35 [Saprolegnia diclina VS20] >EQC34455.1 60S ribosomal protein L35 [Saprolegnia diclina VS20])

HSP 1 Score: 134.8 bits (338), Expect = 2.700e-28
Identity = 78/121 (64.46%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELR+K KA+L              RVAKVTGGAASKLAKIK VRKSIARVLTVYNQTQK +LREK    K++P+DLR KKTRAIRR LTK E+ +KT++  K+E   PKRRYALKA
Sbjct:    7 QIKAHELRSKTKAELLTELDDFQQELAQLRVAKVTGGAASKLAKIKTVRKSIARVLTVYNQTQKERLREKLGNGKHVPVDLREKKTRAIRRALTKSEKAIKTLKQQKKEAYFPKRRYALKA 127
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: GAY00504.1 (ribosomal protein L29 [Pythium insidiosum])

HSP 1 Score: 133.3 bits (334), Expect = 7.900e-28
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 0 
Query:   56 ARGKMVAGKIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            A  K    K+KA ELRTK K +L              RVAKV GGAASKL+KI++VRKSIARVLTVYNQTQK+KLR+    SKY+P DLRRKKTRAIRR L+ HE+ +KT++  K+E   PKRR+ALKA
Sbjct:    2 AATKSCPHKVKAHELRTKTKEELLTQLDDLQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQTQKAKLRQALGSSKYVPQDLRRKKTRAIRRALSSHEKSIKTLKQQKKEAYFPKRRFALKA 130
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: XP_003230055.1 (PREDICTED: 60S ribosomal protein L35 [Anolis carolinensis])

HSP 1 Score: 132.9 bits (333), Expect = 1.000e-27
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            KIKA++LR K+K +L              RVAKVTGGAASKL+KI++VRKSIARVLTV NQTQK  LR+ + G KY PLDLR KKTRA+RRRLTKHEQGLKT +  ++E+  P R+YA+KA
Sbjct:    3 KIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEQGLKTKKQQRKERLYPPRKYAVKA 123
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: ETK76293.1 (ribosomal protein L29 [Phytophthora parasitica] >ETL29734.1 ribosomal protein L29 [Phytophthora parasitica])

HSP 1 Score: 132.9 bits (333), Expect = 1.000e-27
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELRTK K +L              RVAKV GGAASKL+KI++VRKSIARVLTVYNQ QK+KLR      K++PLDLRRK+TRAIRR+L+KHE+ LKT++  K+E   PKRRYALKA
Sbjct:    4 RIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 124
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: XP_008896240.1 (ribosomal protein L29 [Phytophthora parasitica INRA-310] >ETI36066.1 ribosomal protein L29 [Phytophthora parasitica P1569] >ETM36187.1 ribosomal protein L29 [Phytophthora parasitica] >ETN18604.1 ribosomal protein L29 [Phytophthora parasitica INRA-310] >ETO64789.1 ribosomal protein L29 [Phytophthora parasitica P1976] >ETP05887.1 ribosomal protein L29 [Phytophthora parasitica CJ01A1] >ETP33995.1 ribosomal protein L29 [Phytophthora parasitica P10297])

HSP 1 Score: 132.5 bits (332), Expect = 1.300e-27
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELRTK K +L              RVAKV GGAASKL+KI++VRKSIARVLTVYNQ QK+KLR      K++PLDLRRK+TRAIRR+L+KHE+ LKT++  K+E   PKRRYALKA
Sbjct:    3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 123
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: ETL82959.1 (ribosomal protein L29 [Phytophthora parasitica])

HSP 1 Score: 132.5 bits (332), Expect = 1.300e-27
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELRTK K +L              RVAKV GGAASKL+KI++VRKSIARVLTVYNQ QK+KLR      K++PLDLRRK+TRAIRR+L+KHE+ LKT++  K+E   PKRRYALKA
Sbjct:   37 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRAALGSKKHVPLDLRRKQTRAIRRQLSKHEKSLKTLKQQKKESYYPKRRYALKA 157
[Close]
BLAST of NO16G01870 vs. NCBI_GenBank
Match: XP_024581364.1 (ribosomal protein l29 [Plasmopara halstedii] >CEG44995.1 ribosomal protein l29 [Plasmopara halstedii])

HSP 1 Score: 132.5 bits (332), Expect = 1.300e-27
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 0 
Query:   64 KIKAKELRTKQKADLXXXXXXXXXXXXXXRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            +IKA ELRTK K +L              RVAKV GGAASKL+KI++VRKSIARVLTVYNQ QK+KLR      K++PLDLRRKKTRAIRR+L+KH++ +KT++  K+E   PKRRYALKA
Sbjct:    3 QIKAHELRTKSKTELLRQLDDYQQELAQLRVAKVIGGAASKLSKIRVVRKSIARVLTVYNQNQKAKLRSALGNKKHVPLDLRRKKTRAIRRQLSKHDKSIKTLKQQKKESYFPKRRYALKA 123
The following BLAST results are available for this feature:
BLAST of NO16G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855084.12.500e-4285.60large subunit ribosomal protein L35e [Nannochlorop... [more]
OQR86272.12.100e-2863.6460S ribosomal protein L35 [Achlya hypogyna][more]
XP_008617164.12.700e-2864.4660S ribosomal protein L35 [Saprolegnia diclina VS2... [more]
XP_008611861.12.700e-2864.4660S ribosomal protein L35 [Saprolegnia diclina VS2... [more]
GAY00504.17.900e-2859.69ribosomal protein L29 [Pythium insidiosum][more]
XP_003230055.11.000e-2761.98PREDICTED: 60S ribosomal protein L35 [Anolis carol... [more]
ETK76293.11.000e-2761.98ribosomal protein L29 [Phytophthora parasitica] >E... [more]
XP_008896240.11.300e-2761.98ribosomal protein L29 [Phytophthora parasitica INR... [more]
ETL82959.11.300e-2761.98ribosomal protein L29 [Phytophthora parasitica][more]
XP_024581364.11.300e-2761.16ribosomal protein l29 [Plasmopara halstedii] >CEG4... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL153nonsL153Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR035ngnoR035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003243NSK003243Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01870.1NO16G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593653gene_6070Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101009g2gene6585Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01870.1NO16G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01870 ID=NO16G01870|Name=NO16G01870|organism=Nannochloropsis oceanica|type=gene|length=1466bp
CGCCGCTCACCACACACCATCACCCTTCGTCTTGTGTACCTCTCCTGGTC
TTTTCCCCTTCCCCTACACGCCCAAAATGCGCCTCTCGCCATTCACACTC
TTCATCTCCTTCCCAGCATGCGCCTTATACCCTACACGTAAAGGGCCATG
CAGGCGTGGGGTTGGGTAGGGTGGATGGACGGGACGCTGGCGGAGGAAAG
AAGGCAAGGAGGGTTCTCTGCCATGCCACTGTACTCACGCCCTCCTGCAC
CGCGTACCAACGCATGCTCACCACAACACAGGCTTCGTCTACATACACGG
GTTGTTGTATTCGCTCGAGGAAAAATGGTCGCAGgtaagcctttaattta
caagggcggggtaggtttccctcaccctgcccccccccccccccaaaccc
atgcttgcttgccatacgattagagagaccaggcgtacctggaggcagcc
attaagcacctcattgcgtttctgtgtaggtgtgcttctttattcatccc
cccgttgtcatctccgtcgtgtttttcgaggcgtgcgagctctcatagac
gatgactgatgactctcatgctggctgaacatgaatagtgcatctccacg
tgttccaccgcctgtagtaccacgactcgtagctcttatcttgcctctcc
ttccatctcattgtctgcctgacccgttactccttacctgaccaccgccc
tttcatccctcccgccctccccttctccctcctacctgtgcccttcctcc
cagGCAAAATTAAGGCCAAGGAACTCCGTACAAAGCAAAAGGCCGACCTG
GTAAAGCAACTGGATGAGCTCAAGAAGGAACTCTCTGAGCTGCGCGTCGC
CAAGGTCACTGGTGGGGCTGCCAGCAAGCTAGCTAAGATCAAGgtacgct
ctgaaccaagcagctgctagaagagcgatggggacggacaagagagaata
aggccggaatggtagatgccagcgatagtagcagcagcgttagagcttca
atattgtcacaagccatcagtatttagcttctccccctctcttatccctg
cccatcacacagATCGTCCGCAAGTCCATCGCCCGCGTCCTGACCGTCTA
CAACCAAACCCAGAAGTCCAAGCTGCGTGAGAAATTTGCCGGCTCGAAGT
ACATGCCTTTGGATCTGCGCAGGAAGAAGACGCGTGCCATCCGACGACGA
TTGACCAAGCATGAGCAAGGCCTCAAGACCGTGCGGGCCGTGAAGAGGGA
GCAGGCGGCGCCCAAGCGTCGATATGCTCTGAAGGCCTAAGCGGGATGAG
GGAAGGAAGAGAGAAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGAGTTT
CTTGGTTCTTTGTAGGGGATGTGGATGACAGAAATTAAGAGTGAAATTGC
ATTCATACGAGGACCAAGGTTTTCGGGGTAACGAAAGAAAGAAACGAGGG
GAAGGAAACGTCCGAG
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protein sequence of NO16G01870.1

>NO16G01870.1-protein ID=NO16G01870.1-protein|Name=NO16G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MQAWGWVGWMDGTLAEERRQGGFSAMPLYSRPPAPRTNACSPQHRLRLHT
RVVVFARGKMVAGKIKAKELRTKQKADLVKQLDELKKELSELRVAKVTGG
AASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTR
AIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA*
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Synonyms
Publications