NO16G01870.1, NO16G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01870.1
Unique NameNO16G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length878
Alignment locationchr16:547015..548480 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:547015..548480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01870.1 vs.
Match: XP_005855084.1 (large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526]; EKU21268.1 large subunit ribosomal protein L35e [Nannochloropsis gaditana CCMP526]; EWM23878.1 60s ribosomal protein l35 [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 7.300e-50
Identity = 112/125 (89.60%), Postives = 122/125 (97.60%), Query Frame = 0 
Query:   60 MVAGKIKAKELRTKQKADLVKQLDELKKELSELRVAKVTGGAASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA 185
            MVAGK+KAK+LRTK KA++VKQL+ELKKELSELRVAKVTGGAASKLAKIK+VRKSIARVLTVYNQTQK+KLREKF GSKYMP+DLRRKKTRAIRRRLTKHE+GLKTVRAVKREQA PKRRYAL+A
Sbjct:    1 MVAGKLKAKDLRTKSKAEMVKQLEELKKELSELRVAKVTGGAASKLAKIKVVRKSIARVLTVYNQTQKAKLREKFTGSKYMPMDLRRKKTRAIRRRLTKHEEGLKTVRAVKREQAVPKRRYALRA 125
The following BLAST results are available for this feature:
BLAST of NO16G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855084.17.300e-5089.60large subunit ribosomal protein L35e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01870NO16G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01870.1NO16G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01870.1.cds1NO16G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01870.1.cds2NO16G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01870.1.cds3NO16G01870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01870.1 ID=NO16G01870.1|Name=NO16G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=878bp
CGCCGCTCACCACACACCATCACCCTTCGTCTTGTGTACCTCTCCTGGTC
TTTTCCCCTTCCCCTACACGCCCAAAATGCGCCTCTCGCCATTCACACTC
TTCATCTCCTTCCCAGCATGCGCCTTATACCCTACACGTAAAGGGCCATG
CAGGCGTGGGGTTGGGTAGGGTGGATGGACGGGACGCTGGCGGAGGAAAG
AAGGCAAGGAGGGTTCTCTGCCATGCCACTGTACTCACGCCCTCCTGCAC
CGCGTACCAACGCATGCTCACCACAACACAGGCTTCGTCTACATACACGG
GTTGTTGTATTCGCTCGAGGAAAAATGGTCGCAGGCAAAATTAAGGCCAA
GGAACTCCGTACAAAGCAAAAGGCCGACCTGGTAAAGCAACTGGATGAGC
TCAAGAAGGAACTCTCTGAGCTGCGCGTCGCCAAGGTCACTGGTGGGGCT
GCCAGCAAGCTAGCTAAGATCAAGATCGTCCGCAAGTCCATCGCCCGCGT
CCTGACCGTCTACAACCAAACCCAGAAGTCCAAGCTGCGTGAGAAATTTG
CCGGCTCGAAGTACATGCCTTTGGATCTGCGCAGGAAGAAGACGCGTGCC
ATCCGACGACGATTGACCAAGCATGAGCAAGGCCTCAAGACCGTGCGGGC
CGTGAAGAGGGAGCAGGCGGCGCCCAAGCGTCGATATGCTCTGAAGGCCT
AAGCGGGATGAGGGAAGGAAGAGAGAAGGGAAGGAGGGAGGGAAGGAGGG
AGGGAGGAGTTTCTTGGTTCTTTGTAGGGGATGTGGATGACAGAAATTAA
GAGTGAAATTGCATTCATACGAGGACCAAGGTTTTCGGGGTAACGAAAGA
AAGAAACGAGGGGAAGGAAACGTCCGAG
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protein sequence of NO16G01870.1

>NO16G01870.1-protein ID=NO16G01870.1-protein|Name=NO16G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MQAWGWVGWMDGTLAEERRQGGFSAMPLYSRPPAPRTNACSPQHRLRLHT
RVVVFARGKMVAGKIKAKELRTKQKADLVKQLDELKKELSELRVAKVTGG
AASKLAKIKIVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTR
AIRRRLTKHEQGLKTVRAVKREQAAPKRRYALKA*
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mRNA from alignment at chr16:547015..548480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01870.1 ID=NO16G01870.1|Name=NO16G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp|location=Sequence derived from alignment at chr16:547015..548480- (Nannochloropsis oceanica)
CGCCGCTCACCACACACCATCACCCTTCGTCTTGTGTACCTCTCCTGGTC
TTTTCCCCTTCCCCTACACGCCCAAAATGCGCCTCTCGCCATTCACACTC
TTCATCTCCTTCCCAGCATGCGCCTTATACCCTACACGTAAAGGGCCATG
CAGGCGTGGGGTTGGGTAGGGTGGATGGACGGGACGCTGGCGGAGGAAAG
AAGGCAAGGAGGGTTCTCTGCCATGCCACTGTACTCACGCCCTCCTGCAC
CGCGTACCAACGCATGCTCACCACAACACAGGCTTCGTCTACATACACGG
GTTGTTGTATTCGCTCGAGGAAAAATGGTCGCAGGTAAGCCTTTAATTTA
CAAGGGCGGGGTAGGTTTCCCTCACCCTGCCCCCCCCCCCCCCCAAACCC
ATGCTTGCTTGCCATACGATTAGAGAGACCAGGCGTACCTGGAGGCAGCC
ATTAAGCACCTCATTGCGTTTCTGTGTAGGTGTGCTTCTTTATTCATCCC
CCCGTTGTCATCTCCGTCGTGTTTTTCGAGGCGTGCGAGCTCTCATAGAC
GATGACTGATGACTCTCATGCTGGCTGAACATGAATAGTGCATCTCCACG
TGTTCCACCGCCTGTAGTACCACGACTCGTAGCTCTTATCTTGCCTCTCC
TTCCATCTCATTGTCTGCCTGACCCGTTACTCCTTACCTGACCACCGCCC
TTTCATCCCTCCCGCCCTCCCCTTCTCCCTCCTACCTGTGCCCTTCCTCC
CAGGCAAAATTAAGGCCAAGGAACTCCGTACAAAGCAAAAGGCCGACCTG
GTAAAGCAACTGGATGAGCTCAAGAAGGAACTCTCTGAGCTGCGCGTCGC
CAAGGTCACTGGTGGGGCTGCCAGCAAGCTAGCTAAGATCAAGGTACGCT
CTGAACCAAGCAGCTGCTAGAAGAGCGATGGGGACGGACAAGAGAGAATA
AGGCCGGAATGGTAGATGCCAGCGATAGTAGCAGCAGCGTTAGAGCTTCA
ATATTGTCACAAGCCATCAGTATTTAGCTTCTCCCCCTCTCTTATCCCTG
CCCATCACACAGATCGTCCGCAAGTCCATCGCCCGCGTCCTGACCGTCTA
CAACCAAACCCAGAAGTCCAAGCTGCGTGAGAAATTTGCCGGCTCGAAGT
ACATGCCTTTGGATCTGCGCAGGAAGAAGACGCGTGCCATCCGACGACGA
TTGACCAAGCATGAGCAAGGCCTCAAGACCGTGCGGGCCGTGAAGAGGGA
GCAGGCGGCGCCCAAGCGTCGATATGCTCTGAAGGCCTAAGCGGGATGAG
GGAAGGAAGAGAGAAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGAGTTT
CTTGGTTCTTTGTAGGGGATGTGGATGACAGAAATTAAGAGTGAAATTGC
ATTCATACGAGGACCAAGGTTTTCGGGGTAACGAAAGAAAGAAACGAGGG
GAAGGAAACGTCCGAG
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Coding sequence (CDS) from alignment at chr16:547015..548480-

>NO16G01870.1 ID=NO16G01870.1|Name=NO16G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr16:547015..548480- (Nannochloropsis oceanica)
ATGCAGGCGTGGGGTTGGGTAGGGTGGATGGACGGGACGCTGGCGGAGGA
AAGAAGGCAAGGAGGGTTCTCTGCCATGCCACTGTACTCACGCCCTCCTG
CACCGCGTACCAACGCATGCTCACCACAACACAGGCTTCGTCTACATACA
CGGGTTGTTGTATTCGCTCGAGGAAAAATGGTCGCAGGCAAAATTAAGGC
CAAGGAACTCCGTACAAAGCAAAAGGCCGACCTGGTAAAGCAACTGGATG
AGCTCAAGAAGGAACTCTCTGAGCTGCGCGTCGCCAAGGTCACTGGTGGG
GCTGCCAGCAAGCTAGCTAAGATCAAGATCGTCCGCAAGTCCATCGCCCG
CGTCCTGACCGTCTACAACCAAACCCAGAAGTCCAAGCTGCGTGAGAAAT
TTGCCGGCTCGAAGTACATGCCTTTGGATCTGCGCAGGAAGAAGACGCGT
GCCATCCGACGACGATTGACCAAGCATGAGCAAGGCCTCAAGACCGTGCG
GGCCGTGAAGAGGGAGCAGGCGGCGCCCAAGCGTCGATATGCTCTGAAGG
CCTAA
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Synonyms
Publications