NO16G01760, NO16G01760 (gene) Nannochloropsis oceanica

Overview
NameNO16G01760
Unique NameNO16G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr16:523532..524389 -

Link to JBrowse

Properties
Property NameValue
DescriptionNAD(P)-binding Rossmann-fold superfamily protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:523532..524389 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR016040NAD(P)-bd_dom
Homology
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_005704007.1 (hypothetical protein Gasu_49370 [Galdieria sulphuraria] >EME27487.1 hypothetical protein Gasu_49370 [Galdieria sulphuraria])

HSP 1 Score: 137.5 bits (345), Expect = 6.500e-29
Identity = 97/229 (42.36%), Postives = 128/229 (55.90%), Query Frame = 0
Query:   12 GKVVVLGAKGRTGRLILSHLKTLG-----AKEVLAVARN--ITGETNDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGT--NTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFEVVWHQE 232
            G VVV+GA G  G+  +  L++ G     A   + VAR   +    N   V +   DV + S LS+VLK A AV F ASAS GW + GT  NTPKQVDY G V  A+AA QAKV +LV+VSSA V        L L++ FGR+M WKR+GEL  I  T +     +YTIVRPG L ++ + KG + I + QGD +   ++R D A +    L    T N  FEV   ++
Sbjct:    5 GLVVVIGATGPLGKECVLALESQGYHVRAASRRVEVAREMLLKSVKNPSRVDFVHVDVLENSVLSSVLKDAHAVFFCASASAGWRVPGTSKNTPKQVDYLGAVHVAEAAAQAKVKRLVLVSSAMVTNRTSFPYLFLNSSFGRIMHWKRQGELGVIE-THEKNPEMAYTIVRPGHLINEAS-KGAKSIMVDQGDRISWRVSRADVAQICCACLQVENTMNATFEVAGRKQ 231          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: CBJ33213.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.0 bits (328), Expect = 6.100e-27
Identity = 91/239 (38.08%), Postives = 134/239 (56.07%), Query Frame = 0
Query:    2 SSGSTSPSALGKVVVLGAKGRTGRLILSHLKTLGAKEVLAVAR----NITGETNDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTNTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFEVVWHQEEKGKG 237
            +S S   +    + V+GA G+TG+L +  L   G + V AV R    ++ G    D++   AGDV     L   L G  AVLF ASAS+     G N  + VDY+G +  A+A V+  +P+LV++SS  V +P   +   ++ +FG +M  KRKGE+    I   A    +YTIVRPGGL+D     G  GI+++QGDT+GG + R D A V  +A L P T+NT+FE+    ++K +G
Sbjct:   52 ASASEPGTKQSPIAVVGAGGKTGKLAVEGLLKRG-RNVRAVTRTGEFSLGGGDVGDLMTTAAGDVTKTDTLKQALAGCGAVLFCASASKK----GGNA-EAVDYQGVLNAAQACVELGIPRLVVISSGAVTKP-DSLGFKVTNVFGNIMTLKRKGEIGLEEIYAAAPKGLTYTIVRPGGLTDGAV-IGPAGIELNQGDTIGGTVGRGDVAEVVVEAALSPATENTIFEI---YDKKSRG 279          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: CBN74033.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.8 bits (325), Expect = 1.400e-26
Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 0
Query:    7 SPSALGKVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNITGETNDDV-------VKWEAGDVKDASHLSTVLKGASAVLFTASAS-QGWSLFGTNTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFEVVWHQEEK 234
            S +    V VLGA G+TGR  + +L + G   V AVAR++T +  + +       +  E  DV   S L  V+KGASAV+F +SAS QG S       K VDYEG V  AKA ++AKVP+LV+VSS  VA P   I   L+ LFG +M WK +GE + +     A  V  YTIVRPGGL+    P+G+  I+++QGDT  G I R D A V  +++     ++   E  +    K
Sbjct:  105 SAATSSDVTVLGAGGKTGRECVEYLASKGT-GVRAVARSLTNKEGEPLAFTTTKGITMETADVTVPSSLPGVIKGASAVIFASSASKQGGS------AKAVDYEGVVNVAKACLEAKVPRLVVVSSGGVATPESSIYKFLN-LFGEIMSWKIQGE-DQLRSMYAAQDVCHYTIVRPGGLT-LDPPRGVGAIELNQGDTKSGRIARADVARVCVESIYSRNAEDCTLECYYKDTAK 329          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_003080990.2 (NAD(P)-binding domain [Ostreococcus tauri] >CEG01640.1 NAD(P)-binding domain [Ostreococcus tauri])

HSP 1 Score: 117.9 bits (294), Expect = 5.300e-23
Identity = 84/221 (38.01%), Postives = 126/221 (57.01%), Query Frame = 0
Query:   10 ALGKVVVLGAKGRTGRLILSHLK-TLGAKEVLAVARNIT--GETNDDVVKWEAGDVKDAS--HLSTVLKGASAVLFTASASQGWSLFGTNTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFE 226
            A  KVVV+GA G+TGR  + +L+ +  AKE++A  R+ T  G   DD VK  A +V  AS   L+    GA AV+F AS SQ        T  QVD +G +  A+A ++A V + VIVSS  V++P  P+ + L+ LFG +M+ K  GE +A+           YT+VRPGGLS+    +G+  ++++QGD + G I+R+D A +  +++      N  FE
Sbjct:   49 ASDKVVVIGANGKTGRRCVEYLRSSTDAKEIVACTRSGTYEGGAADDRVKARAANVASASVAELANEFAGAKAVIFAASQSQ-----SGGTASQVDRDGVITCARACLRAGVERFVIVSSGAVSKPASPVYIFLN-LFGGIMRNKILGE-DAVRALYFDRPGQFYTVVRPGGLSEDPA-RGVSALELNQGDEMSGRISREDVAAICIESISREDAANATFE 261          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_003058959.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH57414.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 117.5 bits (293), Expect = 6.900e-23
Identity = 85/242 (35.12%), Postives = 126/242 (52.07%), Query Frame = 0
Query:    7 SPSALGKVVVLGAKGRTGRLILSHLKTLGAKEV-------LAVARNITGETNDDVVKWEAGDVKDAS--HLSTVLKGASAVLFTASASQGWSLFGTNTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALV---TAQALLYPTTKNTVFEVVWHQEEKGKG 237
            +P +   +VV GA G+TG+  ++H    G   V        A A       +  +V  +AGDV  AS   L  ++ GA A++F ASAS      G  +P+ VD  G V  A+AA+ A VP+LVIVSS  V++P  P+ + L+  FG +M+ K +GE +A+           Y  VRPGGL++    +G++ I+++QGD   G I+R+D A +    A+A   P  KN  FE  W    K  G
Sbjct:   57 APPSEKPIVVFGANGKTGKRCVAHAAKAGVPVVACTRSGSFASADLAMSADDQKLVTAKAGDVSKASQAELEALVSGAGAIIFAASASP-----GGGSPQDVDKAGLVAVARAAIAANVPRLVIVSSGSVSKPLSPVYVFLN-FFGGIMRAKIEGE-DAVRALYFNREDADYVCVRPGGLTE-DPGQGVRAIELNQGDDKSGRISREDVAAICVEAARAAGTPAAKNATFECYWKDTAKSLG 290          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_024518484.1 (uncharacterized protein At5g02240 [Selaginella moellendorffii] >EFJ10002.1 hypothetical protein SELMODRAFT_269454 [Selaginella moellendorffii])

HSP 1 Score: 117.1 bits (292), Expect = 9.100e-23
Identity = 90/228 (39.47%), Postives = 119/228 (52.19%), Query Frame = 0
Query:   13 KVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNITGET-----NDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGT---NTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGEL---EAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYP--TTKNTVFEVV 228
            KV+V+G+    G  +   L      EV A+ RN+   T       D VK+  GDV     L+   +G   V+ T  A  GW L G+   +TPK VDY G    A+AA  AKVP+ V+VSS  V RPY PI+L+L+ + GRV+ WK KGE    EA S  ++ G    Y I+RPGGL +K+   G   +   QGD   G I R D AL+ AQA L       N  FE++
Sbjct:    2 KVLVVGSSSGCGLEVAKLLAASEEFEVFALVRNLERATKALDSTSDKVKFVLGDVTKPETLAPACEGMDGVVCTIGARAGWKLPGSVMEDTPKFVDYLGVKHLAEAAASAKVPKFVLVSSMGVTRPYSPISLILNAVKGRVLVWKLKGEAAVKEAYSQHEELG----YFIIRPGGLLNKE--GGQYKVIAEQGDKGLGTIARKDVALI-AQACLQGLCPQSNVTFEII 222          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_002975082.1 (uncharacterized protein At5g02240 [Selaginella moellendorffii] >EFJ23867.1 hypothetical protein SELMODRAFT_271112 [Selaginella moellendorffii])

HSP 1 Score: 115.9 bits (289), Expect = 2.000e-22
Identity = 90/228 (39.47%), Postives = 119/228 (52.19%), Query Frame = 0
Query:   13 KVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNITGET-----NDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGT---NTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGEL---EAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYP--TTKNTVFEVV 228
            KV+V+G+    G  +   L      EV A+ RN+   T       D VK+  GDV     L+   +G   V+ T  A  GW L G+   +TPK VDY G    A+AA  AKVP+ V+VSS  V RPY PI+L+L+ + GRV+ WK KGE    EA S  ++ G    Y I+RPGGL +K+   G   I   QGD   G I R D A++ AQA L       N  FE++
Sbjct:    2 KVLVVGSSSGCGLEVAKLLAASEEFEVYALVRNLERATKALDSTSDKVKFVLGDVTKPETLAPACEGMDGVVCTIGARAGWKLPGSVMEDTPKFVDYLGVKHLAEAAASAKVPKFVLVSSMGVTRPYSPISLILNAVKGRVLVWKLKGEAAVKEAYSQHEELG----YFIIRPGGLLNKE--GGQYKIIAEQGDKGLGTIARKDVAVI-AQACLQGLCPLSNVTFEII 222          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_007515782.1 (predicted protein [Bathycoccus prasinos] >CCO14661.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 112.1 bits (279), Expect = 2.900e-21
Identity = 73/232 (31.47%), Postives = 126/232 (54.31%), Query Frame = 0
Query:   12 GKVVVLGAKGRTGRLILSHLKTLGAKEVLAVARN---------ITGETNDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTNTPKQVDYEGCVLTAKAAVQAK-VPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFEVVWHQEEK 234
            G++VV+GA G+TG+  + +    G  +V+A  RN         I  E    V   +       + ++  + GA +V+F AS+S+        +P+++D +GC+  A+A + +K V + V+V+S  V++PY P+ + L+ LFG +M+ K +GE +A+           YTIVRPGGL++   P+G+   +++QGD V G ++R+D A V  + L     KN  FE+ +    K
Sbjct:   30 GQIVVIGANGKTGKRCVKYAAENG-WDVVAATRNGSFPSLTSDIKEEARGRVTTKQCSVTSSMAEITNAIDGAESVIFAASSSK-----DGGSPQEIDRDGCIKVARACLSSKSVKRYVVVTSGAVSKPYSPVYIFLN-LFGGIMRAKIEGE-DAVRALYYEREDDFYTIVRPGGLTE-DPPRGVSACELNQGDDVSGRVSREDVAAVCVECLKRDDAKNATFELYYRDTGK 252          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: XP_002181722.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46936.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.1 bits (279), Expect = 2.900e-21
Identity = 78/219 (35.62%), Postives = 121/219 (55.25%), Query Frame = 0
Query:    3 SGSTSPSALGKVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNIT--GETNDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTNTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTS--YTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYP 218
            +G+T       + V+GA GRTG   +      G   V A +R+ T  G+++  +V     DV   + +S  ++   AV+F ASAS+        TP QVD +G V  A+A +  K+P LV+VSS  V +P  P+   L+ LFG++M+ K KGE E   +   +G+  S  YT++RPGGL++   P+G+  ++++QGDT  G I R D A +  +A  YP
Sbjct:   98 AGNTIAVESSPICVIGANGRTGSQCVQACVERGI-PVRATSRSGTYNGDSSSKLVALLPCDVTKPATISRAIERCQAVIFCASASK-----NGGTPSQVDNDGLVNVARACLAQKIPHLVVVSSGAVTKPNSPVFQFLN-LFGKIMEEKIKGEDEVRRLYSMSGNQPSLVYTVIRPGGLTE-DAPRGVTALELNQGDTKSGRIARADVAALCIEATRYP 308          
BLAST of NO16G01760 vs. NCBI_GenBank
Match: ADE75995.1 (unknown [Picea sitchensis])

HSP 1 Score: 112.1 bits (279), Expect = 2.900e-21
Identity = 69/182 (37.91%), Postives = 100/182 (54.95%), Query Frame = 0
Query:   55 VKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTN--TPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFEVVWHQEEKG 235
            VK+  GD+           G  AV+ T  A+ GW + G N  TPK VD+ G    ++AA  A VP+ V++SS  V RP++ +++ L+T  GR   WK KGE EA+    +     SY I+RPGGL++++   G  GI + QGD   G ITR D A V    +    T N+ FE +W+ +E+G
Sbjct:   55 VKFIDGDITKEDTFQPACNGMDAVVCTVGAAAGWRIPGYNQSTPKHVDFLGVKNLSEAAASAMVPKFVVISSVAVTRPWYWVSIFLNTFMGREFIWKLKGE-EALKEAYKKHEHISYYIIRPGGLTNRE--GGKHGIVVDQGDKGDGWITRVDVAHVALACVNGACTPNSTFE-IWNSKEEG 232          
The following BLAST results are available for this feature:
BLAST of NO16G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005704007.16.500e-2942.36hypothetical protein Gasu_49370 [Galdieria sulphur... [more]
CBJ33213.16.100e-2738.08conserved unknown protein [Ectocarpus siliculosus][more]
CBN74033.11.400e-2640.43conserved unknown protein [Ectocarpus siliculosus][more]
XP_003080990.25.300e-2338.01NAD(P)-binding domain [Ostreococcus tauri] >CEG016... [more]
XP_003058959.16.900e-2335.12predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_024518484.19.100e-2339.47uncharacterized protein At5g02240 [Selaginella moe... [more]
XP_002975082.12.000e-2239.47uncharacterized protein At5g02240 [Selaginella moe... [more]
XP_007515782.12.900e-2131.47predicted protein [Bathycoccus prasinos] >CCO14661... [more]
XP_002181722.12.900e-2135.62predicted protein [Phaeodactylum tricornutum CCAP ... [more]
ADE75995.12.900e-2137.91unknown [Picea sitchensis][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01760.1NO16G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593623gene_6058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01760.1NO16G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01760 ID=NO16G01760|Name=NO16G01760|organism=Nannochloropsis oceanica|type=gene|length=858bp
ATGTCCTCCGGGAGCACATCTCCCTCTGCGCTCGGTAAAGTCGTCGTCCT
TGGGGCTAAGGGCCGCACTGGGCGCCTCATCCTTTCTCACTTGAAGACGC
TGGGCGCCAAGGAGGTCCTCGCTGTAGCACGCAACATCACGGGAGAGACG
AACGACGACGTGGTCAAGTGGGAAGCGGGCGACGTCAAGGACGCGAGCCA
TCTCAGCACAGTCCTCAAAGGGGCGTCGGCCGTGCTATTCACCGCTTCGG
CATCTCAAGGTTGGTCTCTCTTCGGTACCAATACACCGAAGCAAGTGGAC
TACGAAGGGTGTGTGCTGACAGCCAAGGCGGCTGTGCAGGCGAAGGTGCC
CCAGCTCGTCATTGTCAGTAGCGCTTTCGTGGCGAGGCCTTACCACCCGA
TTGCCCTCATGCTATCCACCTTGTTTGGCCGGGTCATGCAATGGAAGCGC
AAAGGTGAGCTCGAAGCCATTTCCATCACGCAGCAAGCAGGCTCTGTTAC
TTCCTATACCATAGTTCGACCGGGGGGTCTCTCGGATAAAAAGACGCCTA
AGGGATTACAAGGCATTCAGATCAGCCAGGGCGACACCGTAGGTGGGATG
ATTACGCGAGATGATACCGCTCTGGTGACGGCACAAGCCTTGCTTTACCC
CACCACCAAAAATACTGTGTTTGAAGTGGTCTGGCACCAGGAGGAGAAGG
GGAAGGGGGGGGAAGAGCAGCAGCCCCCGCCGGTGCGGTACCAAGGTTGG
ACAGATTTCTTTTCTCGGTTACGCCCCAATATTGGCGCGCATGATTCTAC
ATTCTACCCCTCAGATCACGGGCAGCCCATGAAAGAGATGGGTCAAGGGG
AACTGTGA
back to top

protein sequence of NO16G01760.1

>NO16G01760.1-protein ID=NO16G01760.1-protein|Name=NO16G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSSGSTSPSALGKVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNITGET
NDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTNTPKQVD
YEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKR
KGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGM
ITRDDTALVTAQALLYPTTKNTVFEVVWHQEEKGKGGEEQQPPPVRYQGW
TDFFSRLRPNIGAHDSTFYPSDHGQPMKEMGQGEL*
back to top
Synonyms
Publications