NO16G01760.1, NO16G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01760.1
Unique NameNO16G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr16:523532..524389 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:523532..524389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01760.1 vs.
Match: XP_005704007.1 (hypothetical protein Gasu_49370 [Galdieria sulphuraria]; EME27487.1 hypothetical protein Gasu_49370 [Galdieria sulphuraria])

HSP 1 Score: 139.4 bits (350), Expect = 1.700e-29
Identity = 102/246 (41.46%), Postives = 134/246 (54.47%), Query Frame = 0 
Query:   12 GKVVVLGAKGRTGRLILSHLKTLG-----AKEVLAVARNITGET--NDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGT--NTPKQVDYEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKRKGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGMITRDDTALVTAQALLYPTTKNTVFEVVWHQEEKGKGGEEQQPPPVRYQ 249
            G VVV+GA G  G+  +  L++ G     A   + VAR +  ++  N   V +   DV + S LS+VLK A AV F ASAS GW + GT  NTPKQVDY G V  A+AA QAKV +LV+VSSA V        L L++ FGR+M WKR+GEL  I  T +     +YTIVRPG L ++ + KG + I + QGD +   ++R D A +    L    T N  FEV        K    Q  PP  Y+
Sbjct:    5 GLVVVIGATGPLGKECVLALESQGYHVRAASRRVEVAREMLLKSVKNPSRVDFVHVDVLENSVLSSVLKDAHAVFFCASASAGWRVPGTSKNTPKQVDYLGAVHVAEAAAQAKVKRLVLVSSAMVTNRTSFPYLFLNSSFGRIMHWKRQGELGVIE-THEKNPEMAYTIVRPGHLINEAS-KGAKSIMVDQGDRISWRVSRADVAQICCACLQVENTMNATFEVAGR-----KQATSQSNPPDTYE 243
The following BLAST results are available for this feature:
BLAST of NO16G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005704007.11.700e-2941.46hypothetical protein Gasu_49370 [Galdieria sulphur... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01760NO16G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01760.1NO16G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01760.1.cds1NO16G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01760.1 ID=NO16G01760.1|Name=NO16G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGTCCTCCGGGAGCACATCTCCCTCTGCGCTCGGTAAAGTCGTCGTCCT
TGGGGCTAAGGGCCGCACTGGGCGCCTCATCCTTTCTCACTTGAAGACGC
TGGGCGCCAAGGAGGTCCTCGCTGTAGCACGCAACATCACGGGAGAGACG
AACGACGACGTGGTCAAGTGGGAAGCGGGCGACGTCAAGGACGCGAGCCA
TCTCAGCACAGTCCTCAAAGGGGCGTCGGCCGTGCTATTCACCGCTTCGG
CATCTCAAGGTTGGTCTCTCTTCGGTACCAATACACCGAAGCAAGTGGAC
TACGAAGGGTGTGTGCTGACAGCCAAGGCGGCTGTGCAGGCGAAGGTGCC
CCAGCTCGTCATTGTCAGTAGCGCTTTCGTGGCGAGGCCTTACCACCCGA
TTGCCCTCATGCTATCCACCTTGTTTGGCCGGGTCATGCAATGGAAGCGC
AAAGGTGAGCTCGAAGCCATTTCCATCACGCAGCAAGCAGGCTCTGTTAC
TTCCTATACCATAGTTCGACCGGGGGGTCTCTCGGATAAAAAGACGCCTA
AGGGATTACAAGGCATTCAGATCAGCCAGGGCGACACCGTAGGTGGGATG
ATTACGCGAGATGATACCGCTCTGGTGACGGCACAAGCCTTGCTTTACCC
CACCACCAAAAATACTGTGTTTGAAGTGGTCTGGCACCAGGAGGAGAAGG
GGAAGGGGGGGGAAGAGCAGCAGCCCCCGCCGGTGCGGTACCAAGGTTGG
ACAGATTTCTTTTCTCGGTTACGCCCCAATATTGGCGCGCATGATTCTAC
ATTCTACCCCTCAGATCACGGGCAGCCCATGAAAGAGATGGGTCAAGGGG
AACTGTGA
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protein sequence of NO16G01760.1

>NO16G01760.1-protein ID=NO16G01760.1-protein|Name=NO16G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSSGSTSPSALGKVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNITGET
NDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTNTPKQVD
YEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKR
KGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGM
ITRDDTALVTAQALLYPTTKNTVFEVVWHQEEKGKGGEEQQPPPVRYQGW
TDFFSRLRPNIGAHDSTFYPSDHGQPMKEMGQGEL*
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mRNA from alignment at chr16:523532..524389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01760.1 ID=NO16G01760.1|Name=NO16G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at chr16:523532..524389- (Nannochloropsis oceanica)
ATGTCCTCCGGGAGCACATCTCCCTCTGCGCTCGGTAAAGTCGTCGTCCT
TGGGGCTAAGGGCCGCACTGGGCGCCTCATCCTTTCTCACTTGAAGACGC
TGGGCGCCAAGGAGGTCCTCGCTGTAGCACGCAACATCACGGGAGAGACG
AACGACGACGTGGTCAAGTGGGAAGCGGGCGACGTCAAGGACGCGAGCCA
TCTCAGCACAGTCCTCAAAGGGGCGTCGGCCGTGCTATTCACCGCTTCGG
CATCTCAAGGTTGGTCTCTCTTCGGTACCAATACACCGAAGCAAGTGGAC
TACGAAGGGTGTGTGCTGACAGCCAAGGCGGCTGTGCAGGCGAAGGTGCC
CCAGCTCGTCATTGTCAGTAGCGCTTTCGTGGCGAGGCCTTACCACCCGA
TTGCCCTCATGCTATCCACCTTGTTTGGCCGGGTCATGCAATGGAAGCGC
AAAGGTGAGCTCGAAGCCATTTCCATCACGCAGCAAGCAGGCTCTGTTAC
TTCCTATACCATAGTTCGACCGGGGGGTCTCTCGGATAAAAAGACGCCTA
AGGGATTACAAGGCATTCAGATCAGCCAGGGCGACACCGTAGGTGGGATG
ATTACGCGAGATGATACCGCTCTGGTGACGGCACAAGCCTTGCTTTACCC
CACCACCAAAAATACTGTGTTTGAAGTGGTCTGGCACCAGGAGGAGAAGG
GGAAGGGGGGGGAAGAGCAGCAGCCCCCGCCGGTGCGGTACCAAGGTTGG
ACAGATTTCTTTTCTCGGTTACGCCCCAATATTGGCGCGCATGATTCTAC
ATTCTACCCCTCAGATCACGGGCAGCCCATGAAAGAGATGGGTCAAGGGG
AACTGTGA
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Coding sequence (CDS) from alignment at chr16:523532..524389-

>NO16G01760.1 ID=NO16G01760.1|Name=NO16G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr16:523532..524389- (Nannochloropsis oceanica)
ATGTCCTCCGGGAGCACATCTCCCTCTGCGCTCGGTAAAGTCGTCGTCCT
TGGGGCTAAGGGCCGCACTGGGCGCCTCATCCTTTCTCACTTGAAGACGC
TGGGCGCCAAGGAGGTCCTCGCTGTAGCACGCAACATCACGGGAGAGACG
AACGACGACGTGGTCAAGTGGGAAGCGGGCGACGTCAAGGACGCGAGCCA
TCTCAGCACAGTCCTCAAAGGGGCGTCGGCCGTGCTATTCACCGCTTCGG
CATCTCAAGGTTGGTCTCTCTTCGGTACCAATACACCGAAGCAAGTGGAC
TACGAAGGGTGTGTGCTGACAGCCAAGGCGGCTGTGCAGGCGAAGGTGCC
CCAGCTCGTCATTGTCAGTAGCGCTTTCGTGGCGAGGCCTTACCACCCGA
TTGCCCTCATGCTATCCACCTTGTTTGGCCGGGTCATGCAATGGAAGCGC
AAAGGTGAGCTCGAAGCCATTTCCATCACGCAGCAAGCAGGCTCTGTTAC
TTCCTATACCATAGTTCGACCGGGGGGTCTCTCGGATAAAAAGACGCCTA
AGGGATTACAAGGCATTCAGATCAGCCAGGGCGACACCGTAGGTGGGATG
ATTACGCGAGATGATACCGCTCTGGTGACGGCACAAGCCTTGCTTTACCC
CACCACCAAAAATACTGTGTTTGAAGTGGTCTGGCACCAGGAGGAGAAGG
GGAAGGGGGGGGAAGAGCAGCAGCCCCCGCCGGTGCGGTACCAAGGTTGG
ACAGATTTCTTTTCTCGGTTACGCCCCAATATTGGCGCGCATGATTCTAC
ATTCTACCCCTCAGATCACGGGCAGCCCATGAAAGAGATGGGTCAAGGGG
AACTGTGA
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Synonyms
Publications