NO16G01670, NO16G01670 (gene) Nannochloropsis oceanica

Overview
NameNO16G01670
Unique NameNO16G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr16:496179..497540 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:496179..497540 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01670 vs. NCBI_GenBank
Match: EWM23979.1 (hypothetical protein Naga_100027g37 [Nannochloropsis gaditana])

HSP 1 Score: 426.8 bits (1096), Expect = 8.500e-116
Identity = 239/453 (52.76%), Postives = 286/453 (63.13%), Query Frame = 0 
Query:    1 MARIPCRRLDCFLLLLLAVTPYTTPAAVAVASIPTPSSLPVLQSPLKKGRQEPPATPSRSTWDIKTFHAFVKARTGGMCAALAGPASSTSSPTVYWVLRGQLSNPFTGDVIANVRGLEVLYLLGYTQAPDIPKISKYQTLAIAPLPPSVSHALPGTRKCLHLPEPQADNXXXXXXXXXXXXXXXVSKKQPWCAVATTISAKTFRYFEPLTNQPLLTFRPGPRAKPRQVPLAVTTTQAVSYVLSRSGHLHLVAESVTGGLMAVQDQGAGPVCKAKRSKLLSLFFPMPAPKTFELSLLMWPGSKRSNHGMSXXXXXXXXXXXXXXXXXXFPWGSIIQFGASSAQPACRELYALSTEPASKQQGRRPRMKYLRYGEAPHWCGAGRVCHLALKGTRYDRLQDIPREERQLFFPNTKKG-LEGEEGGSLLAVFPPGSAQEFLDEAERVRRTQRKRFIF 453
            M+RI C  L   LL L +     + AAVA  S PT        S +    QEP  TPSR  WD+  FHAFVK RTGG+C+A      S  +  VYWVL GQLSNPFTGDVIA VRG+EV+  +GY QAP   + +   +     LP S SHA+PGTR CL L + Q                   +  Q WCA+AT++SAKTFRYFEP T +PLL FRPGPRAK R VP A+TT Q ++Y LS SG LHLVAES+ GGL+AV+++ AGPV  +++ K +  F P P PK FELSLLMWPGSKR N   S                  FPW S++QFG SSAQPACRELY L+TEP  KQ+GRRPR+KYLRYGEAPHWCGAGRVCHLAL GTR+DRLQD+P+  R+LFFP T    L  E    + A  PP S + FL+EA  V+R +R RF F
Sbjct:    1 MSRIICLGL---LLALWSTRNRLSTAAVASTSTPTWPQKGQRNS-MANQAQEPSVTPSR--WDLNAFHAFVKGRTGGICSA----PVSLPTTNVYWVLHGQLSNPFTGDVIAEVRGIEVVRFVGYVQAPGQQRGNICGSHPAVDLPKSQSHAMPGTRMCLQLKDSQP--KVTETGEEKRHVDIQTASLQRWCALATSVSAKTFRYFEPCTGRPLLRFRPGPRAKVRTVPAAITTKQVITYALSHSGSLHLVAESLNGGLVAVKNEAAGPVLVSQKRKCILCFPPKP-PKKFELSLLMWPGSKRGNRDYSRNEGKASEERKVDGSRRRFPWRSLVQFGTSSAQPACRELYTLTTEPLPKQRGRRPRIKYLRYGEAPHWCGAGRVCHLALDGTRFDRLQDVPKRYRELFFPTTTTAPLTDESEKKVSAELPPQSVEAFLEEARGVQRAERARFPF 440
The following BLAST results are available for this feature:
BLAST of NO16G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23979.18.500e-11652.76hypothetical protein Naga_100027g37 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003152NSK003152Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01670.1NO16G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640099gene_6049Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g37gene6507Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01670.1NO16G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01670 ID=NO16G01670|Name=NO16G01670|organism=Nannochloropsis oceanica|type=gene|length=1362bp
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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protein sequence of NO16G01670.1

>NO16G01670.1-protein ID=NO16G01670.1-protein|Name=NO16G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MARIPCRRLDCFLLLLLAVTPYTTPAAVAVASIPTPSSLPVLQSPLKKGR
QEPPATPSRSTWDIKTFHAFVKARTGGMCAALAGPASSTSSPTVYWVLRG
QLSNPFTGDVIANVRGLEVLYLLGYTQAPDIPKISKYQTLAIAPLPPSVS
HALPGTRKCLHLPEPQADNSNKAKAETKANASSSVSKKQPWCAVATTISA
KTFRYFEPLTNQPLLTFRPGPRAKPRQVPLAVTTTQAVSYVLSRSGHLHL
VAESVTGGLMAVQDQGAGPVCKAKRSKLLSLFFPMPAPKTFELSLLMWPG
SKRSNHGMSSGSSGSNGVEDGGGGGGGFPWGSIIQFGASSAQPACRELYA
LSTEPASKQQGRRPRMKYLRYGEAPHWCGAGRVCHLALKGTRYDRLQDIP
REERQLFFPNTKKGLEGEEGGSLLAVFPPGSAQEFLDEAERVRRTQRKRF
IFF*
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Synonyms
Publications