NO16G01670.1, NO16G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01670.1
Unique NameNO16G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr16:496179..497540 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:496179..497540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01670.1 vs.
Match: EWM23979.1 (hypothetical protein Naga_100027g37 [Nannochloropsis gaditana])

HSP 1 Score: 420.6 bits (1080), Expect = 6.100e-114
Identity = 242/453 (53.42%), Postives = 293/453 (64.68%), Query Frame = 0 
Query:    1 MARIPCRRLDCFLLLLLAVTPYTTPAAVAVASIPTPSSLPVLQSPLKKGRQEPPATPSRSTWDIKTFHAFVKARTGGMCAALAGPASSTSSPTVYWVLRGQLSNPFTGDVIANVRGLEVLYLLGYTQAPDIPKISKYQTLAIAPLPPSVSHALPGTRKCLHLPEPQADNSNKAKAETKANASSSVSKKQPWCAVATTISAKTFRYFEPLTNQPLLTFRPGPRAKPRQVPLAVTTTQAVSYVLSRSGHLHLVAESVTGGLMAVQDQGAGPVCKAKRSKLLSLFFPMPAPKTFELSLLMWPGSKRSNHGMSSGSSGSNGVEDGGGGGGGFPWGSIIQFGASSAQPACRELYALSTEPASKQQGRRPRMKYLRYGEAPHWCGAGRVCHLALKGTRYDRLQDIPREERQLFFPNTKKG-LEGEEGGSLLAVFPPGSAQEFLDEAERVRRTQRKRFIF 453
            M+RI C  L   LL L +     + AAVA  S PT        S   +  QEP  TPSR  WD+  FHAFVK RTGG+C+A      S  +  VYWVL GQLSNPFTGDVIA VRG+EV+  +GY QAP   + +   +     LP S SHA+PGTR CL L + Q   +     E K +     +  Q WCA+AT++SAKTFRYFEP T +PLL FRPGPRAK R VP A+TT Q ++Y LS SG LHLVAES+ GGL+AV+++ AGPV  +++ K +  F P P PK FELSLLMWPGSKR N   S     ++      G    FPW S++QFG SSAQPACRELY L+TEP  KQ+GRRPR+KYLRYGEAPHWCGAGRVCHLAL GTR+DRLQD+P+  R+LFFP T    L  E    + A  PP S + FL+EA  V+R +R RF F
Sbjct:    1 MSRIICLGL---LLALWSTRNRLSTAAVASTSTPTWPQKGQRNSMANQA-QEPSVTPSR--WDLNAFHAFVKGRTGGICSAPV----SLPTTNVYWVLHGQLSNPFTGDVIAEVRGIEVVRFVGYVQAPGQQRGNICGSHPAVDLPKSQSHAMPGTRMCLQLKDSQPKVTETG--EEKRHVDIQTASLQRWCALATSVSAKTFRYFEPCTGRPLLRFRPGPRAKVRTVPAAITTKQVITYALSHSGSLHLVAESLNGGLVAVKNEAAGPVLVSQKRKCILCFPPKP-PKKFELSLLMWPGSKRGNRDYSRNEGKASEERKVDGSRRRFPWRSLVQFGTSSAQPACRELYTLTTEPLPKQRGRRPRIKYLRYGEAPHWCGAGRVCHLALDGTRFDRLQDVPKRYRELFFPTTTTAPLTDESEKKVSAELPPQSVEAFLEEARGVQRAERARFPF 440
The following BLAST results are available for this feature:
BLAST of NO16G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23979.16.100e-11453.42hypothetical protein Naga_100027g37 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01670NO16G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01670.1NO16G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01670.1.cds1NO16G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01670.1 ID=NO16G01670.1|Name=NO16G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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protein sequence of NO16G01670.1

>NO16G01670.1-protein ID=NO16G01670.1-protein|Name=NO16G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MARIPCRRLDCFLLLLLAVTPYTTPAAVAVASIPTPSSLPVLQSPLKKGR
QEPPATPSRSTWDIKTFHAFVKARTGGMCAALAGPASSTSSPTVYWVLRG
QLSNPFTGDVIANVRGLEVLYLLGYTQAPDIPKISKYQTLAIAPLPPSVS
HALPGTRKCLHLPEPQADNSNKAKAETKANASSSVSKKQPWCAVATTISA
KTFRYFEPLTNQPLLTFRPGPRAKPRQVPLAVTTTQAVSYVLSRSGHLHL
VAESVTGGLMAVQDQGAGPVCKAKRSKLLSLFFPMPAPKTFELSLLMWPG
SKRSNHGMSSGSSGSNGVEDGGGGGGGFPWGSIIQFGASSAQPACRELYA
LSTEPASKQQGRRPRMKYLRYGEAPHWCGAGRVCHLALKGTRYDRLQDIP
REERQLFFPNTKKGLEGEEGGSLLAVFPPGSAQEFLDEAERVRRTQRKRF
IFF*
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mRNA from alignment at chr16:496179..497540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01670.1 ID=NO16G01670.1|Name=NO16G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at chr16:496179..497540- (Nannochloropsis oceanica)
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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Coding sequence (CDS) from alignment at chr16:496179..497540-

>NO16G01670.1 ID=NO16G01670.1|Name=NO16G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr16:496179..497540- (Nannochloropsis oceanica)
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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Synonyms
Publications