NO16G01590, NO16G01590 (gene) Nannochloropsis oceanica

Overview
NameNO16G01590
Unique NameNO16G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2375
Alignment locationchr16:480046..482420 +

Link to JBrowse

Properties
Property NameValue
DescriptionSet domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:480046..482420 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
[Close]
BLAST of NO16G01590 vs. NCBI_GenBank
Match: EWM23968.1 (set domain protein [Nannochloropsis gaditana])

HSP 1 Score: 187.6 bits (475), Expect = 5.100e-44
Identity = 109/200 (54.50%), Postives = 120/200 (60.00%), Query Frame = 0 
Query:   17 EKFEPELDFLLGSPGFWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEALRNWDACQRGGGGGSLHDHYRHGDVFPSAWHQHLSLSSTDGVVSPMHTHASADVTA----------ATAGAPAGGGVPQNGHIAFQSSLGGGPWEGQPLETCL 207
            E  +PE++ LL SPGFWAKLGHHPYWPARAASKEEQRRY+SYQRKATQVCVKFFGSNDIGWIHPASLV F+EG+R+SFNTN+KVTKN KFVAGVEEA+R W                RH   FP             GV SP   HA                    A   GG   NG  A  S+LG     G P E+CL
Sbjct:   13 ESIDPEVERLLRSPGFWAKLGHHPYWPARAASKEEQRRYSSYQRKATQVCVKFFGSNDIGWIHPASLVNFDEGLRRSFNTNSKVTKNVKFVAGVEEAIRLWKE--------------RHEPQFP-------------GVTSPTWPHAPPHSAGXXXXXXXXXXXXXXAAVTGGACANGIEAHASALGAVWTHGLP-ESCL 184
[Close]
BLAST of NO16G01590 vs. NCBI_GenBank
Match: CCI40796.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.8 bits (164), Expect = 5.900e-8
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:   22 ELDFLLGSPG--FWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEAL 115
            EL  LL + G    AK+G+HP WPAR +   E  +   Y++K TQ+CV FFGS + GW+   +L AF E + +++    K     K+   +EEA+
Sbjct:   24 ELQDLLNAHGGIILAKVGNHPPWPARYSELGEFLKMIRYRQKRTQICVYFFGSRNYGWVFRNALQAFRETIPQNYKALKKHGLQQKYEEALEEAI 118
[Close]
BLAST of NO16G01590 vs. NCBI_GenBank
Match: CCI40797.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.8 bits (164), Expect = 5.900e-8
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:   22 ELDFLLGSPG--FWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEAL 115
            EL  LL + G    AK+G+HP WPAR +   E  +   Y++K TQ+CV FFGS + GW+   +L AF E + +++    K     K+   +EEA+
Sbjct:   21 ELQDLLNAHGGIILAKVGNHPPWPARYSELGEFLKMIRYRQKRTQICVYFFGSRNYGWVFRNALQAFRETIPQNYKALKKHGLQQKYEEALEEAI 115
[Close]
BLAST of NO16G01590 vs. NCBI_GenBank
Match: CCI40798.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.8 bits (164), Expect = 5.900e-8
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:   22 ELDFLLGSPG--FWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEAL 115
            EL  LL + G    AK+G+HP WPAR +   E  +   Y++K TQ+CV FFGS + GW+   +L AF E + +++    K     K+   +EEA+
Sbjct:   21 ELQDLLNAHGGIILAKVGNHPPWPARYSELGEFLKMIRYRQKRTQICVYFFGSRNYGWVFRNALQAFRETIPQNYKALKKHGLQQKYEEALEEAI 115
[Close]
BLAST of NO16G01590 vs. NCBI_GenBank
Match: CCI40799.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.8 bits (164), Expect = 5.900e-8
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:   22 ELDFLLGSPG--FWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEAL 115
            EL  LL + G    AK+G+HP WPAR +   E  +   Y++K TQ+CV FFGS + GW+   +L AF E + +++    K     K+   +EEA+
Sbjct:   21 ELQDLLNAHGGIILAKVGNHPPWPARYSELGEFLKMIRYRQKRTQICVYFFGSRNYGWVFRNALQAFRETIPQNYKALKKHGLQQKYEEALEEAI 115
[Close]
BLAST of NO16G01590 vs. NCBI_GenBank
Match: CCA14194.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 0 
Query:   22 ELDFLLGSPG--FWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEAL 115
            EL  LL + G    AK+G+HP WPAR +   E  +   Y++K TQ+CV FFGS + GW+   +L  F + + ++F    K     K+   +EEA+
Sbjct:   21 ELQDLLNAHGGIILAKVGNHPPWPARYSELGEFLKMIRYRQKRTQICVYFFGSRNYGWVFRNALQTFRDTIPQNFKALKKHGLQQKYEEALEEAI 115
The following BLAST results are available for this feature:
BLAST of NO16G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM23968.15.100e-4454.50set domain protein [Nannochloropsis gaditana][more]
CCI40796.15.900e-837.89unnamed protein product [Albugo candida][more]
CCI40797.15.900e-837.89unnamed protein product [Albugo candida][more]
CCI40798.15.900e-837.89unnamed protein product [Albugo candida][more]
CCI40799.15.900e-837.89unnamed protein product [Albugo candida][more]
CCA14194.11.700e-736.84conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003144NSK003144Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01590.1NO16G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100027g30gene6500Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01590.1NO16G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01590 ID=NO16G01590|Name=NO16G01590|organism=Nannochloropsis oceanica|type=gene|length=2375bp
TTAGGGCACCTGTGCGGTCACTGTACAGGAAATGATTGTGAAAGCCAAAG
GTTAGCTCAAGAGTAGCCTTCATTGGCGGGCGACCTTGGATAAACTCAGC
AAAGACCCATGTGAGCGGACGCCTGAAAGGATGGGGGTATTAAAGCCCTA
CTTGAGCTCCTTGGCTGACTTATTTAAACCTGGTTGTGCAGCATATCTTC
GCATGAGTGTAGTTTGAGAGGTGGTGAAGGGGCTAGAACCCGACGAAGAA
GAAGGAGGGAGGCAGGAGGAGGCAGGAGTATTGATGCAACGAGACAAGCA
AATTCCTGGCAGTAATCGAATACTTTGACCTCACGTTTCATTTTCTCTGC
ACTAACCAACCCAGGGCCCGTCTCCACCGCTTCTTTTGTCGTCGACCAGC
ATGTTGACAAACGCCTTACCTGGGTCGTGGCTCTACACACAATCCATgta
agtcttctcacaccagagagggttgcgcgaagcaccacctccctcgtgat
ctgagaaatggaaaaggccatgccccagggccattccctccctacaccca
ccttatagccgctgtgtccatgtcaaggccttgggagggtctgtataaca
cgctccatagaacgcgagtcctcatttggctcctagtcccttatcctacc
tttatattggtcacagGCATGCTGCTCCTGCGGAAGATGAGGAGATGGCA
GAGGGAGGAGCACGACACTAAGGCGGTCCTTGGAAGCCTTTTCCGAGGCC
ACTGACTGCTCCACAGACCGGGACGTTCCTAGTATTATACGGCAGATGCG
TGCTTATGGTTGAATAGTGACAACGTGGAGGAGGAATGCCTAAAAATTGA
GAGTGCTCAAACTACTTCCGTAGAGGGGCAGTTATGAATCCCTCCAATTA
CTTCCTGGTAACCGCCTTAACGTCACTCCATCACCCTGCACACGTGATTG
AAGACAGGTGGTCTACGCGTGTATAGATGGTGGTTTTGGTGTTCATGCAT
TGGGACACATGTGGGTGGTCGGGAAGGAGCGCAGAAAATCCTCTTCTCTT
CTCGCGACCTACCGCGGTGGCGTATTCATCTCCCTCGACTTTTTCCCTCC
ATACGTTTGCGATCTTGCCCTAGTAGTTGATACAGTTATTGTTTCTTAAC
TTTGGAGGCATGGGGTGTCCGCCAATGGATTCTGGAGTTTTTTGTTGGAT
TGTTTGTGGTGCATATTTGGTGCTATGAGTAGTGCTGACGTTCTGTGCCT
CGATCACGACCACGCATCCTCCGTACAACACCTCGAAGCGTGTCTTGCTG
TTTCCTACCTTGCCGAGCGGCAGGCCACACGTCGCAAGACTGTTGTTTGT
GTCCGTCGCTGACTGAAGTGAAGGGTAGCATAACCCCTGCACCTTCCCTC
CTCCCTTCTTCGTTTATTCACCCGTTCCCCTCTACTCTTTTCACCACTTA
TAGGTGAATGATCAACGCGGCGCGGATTTATTCTTAGATAATTTGGGGGA
AAATAAGTAGCGCGACGCCACATCGACGAGTCAAGACGAATCCCACAAGA
GAGTGAGAGAGAGAAAAGAGACATATGGCGTCCAGCAGTGGTGGCGGCAG
CGGCGGCGGCTCGGTCATGATGGAAAAGTTCGAGCCCGAGCTGGATTTTC
TACTTGGATCCCCGGGCTTCTGGGCGAAATTGGGACACCATCCCTACTGG
CCTGCGCGTGCGGCGTCGAAGGAGGAGCAACGACGATACGCTTCGTACCA
GCGGAAGGCGACTCAAGTGTGTGTGAAATTCTTCGGCTCGAATGACATTG
GCTGGATCCATCCGGCGAGCTTGGTGGCGTTCGAGGAAGGGATGAGGAAA
TCTTTCAATACCAACGCCAAAGTCACTAAAAATGCGAAATTTGTCGCTGG
GGTTGAAGAGGCGCTGCGAAATTGGGATGCCTGTCAAAGGGGAGGAGGAG
GAGGATCGCTCCATGACCACTACAGGCATGGTGACGTTTTCCCCTCTGCT
TGGCATCAACACTTGTCACTCTCGTCCACTGACGGGGTCGTGTCACCCAT
GCATACACACGCTTCTGCTGATGTCACTGCTGCTACTGCTGGTGCTCCAG
CTGGGGGAGGGGTGCCTCAGAATGGACATATTGCGTTTCAATCTTCCTTG
GGAGGGGGGCCGTGGGAGGGCCAGCCACTCGAGACTTGCTTGTTACAAGA
GCAATATCACAGTGATTTTGCTCCGGGCTTGGGTATACTCGGTGGAGGTG
CTGCTGCTGGGGGAGGGGGGGGGAGGAAGGGGTGGAGGGAGCTCGTCGAG
GCAGGGGACGACCTCCGCGCGTGTCAGAAAACGCTGCAGCAGAATTGGAG
GCGAAGAGGCGACGGGCCTCGCTGA
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protein sequence of NO16G01590.1

>NO16G01590.1-protein ID=NO16G01590.1-protein|Name=NO16G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MASSSGGGSGGGSVMMEKFEPELDFLLGSPGFWAKLGHHPYWPARAASKE
EQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKV
TKNAKFVAGVEEALRNWDACQRGGGGGSLHDHYRHGDVFPSAWHQHLSLS
STDGVVSPMHTHASADVTAATAGAPAGGGVPQNGHIAFQSSLGGGPWEGQ
PLETCLLQEQYHSDFAPGLGILGGGAAAGGGGGRKGWRELVEAGDDLRAC
QKTLQQNWRRRGDGPR*
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Synonyms
Publications