NO16G01590.1, NO16G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01590.1
Unique NameNO16G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2156
Alignment locationchr16:480046..482420 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:480046..482420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01590.1 vs.
Match: EWM23968.1 (set domain protein [Nannochloropsis gaditana])

HSP 1 Score: 202.2 bits (513), Expect = 2.000e-48
Identity = 119/202 (58.91%), Postives = 130/202 (64.36%), Query Frame = 0 
Query:    9 SGGGSVMM-EKFEPELDFLLGSPGFWAKLGHHPYWPARAASKEEQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKVTKNAKFVAGVEEALRNWDACQRGGGGGSLHDHYRHGDVFP---SAWHQHLSLSSTDGVVSPMHTHASADVTAATAGAPAGGGVPQNGHIAFQSSLGGGPWEGQPLETCL 207
            SGGGSV   E  +PE++ LL SPGFWAKLGHHPYWPARAASKEEQRRY+SYQRKATQVCVKFFGSNDIGWIHPASLV F+EG+R+SFNTN+KVTKN KFVAGVEEA+R W                RH   FP   S    H    S  G   P HT A A   AA       GG   NG  A  S+LG     G P E+CL
Sbjct:    4 SGGGSVAATESIDPEVERLLRSPGFWAKLGHHPYWPARAASKEEQRRYSSYQRKATQVCVKFFGSNDIGWIHPASLVNFDEGLRRSFNTNSKVTKNVKFVAGVEEAIRLWKE--------------RHEPQFPGVTSPTWPHAPPHSAGG-APPPHTRAQAAAVAAVT-----GGACANGIEAHASALGAVWTHGLP-ESCL 184
The following BLAST results are available for this feature:
BLAST of NO16G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23968.12.000e-4858.91set domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01590NO16G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01590.1NO16G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01590.1.cds1NO16G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01590.1 ID=NO16G01590.1|Name=NO16G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp
TTAGGGCACCTGTGCGGTCACTGTACAGGAAATGATTGTGAAAGCCAAAG
GTTAGCTCAAGAGTAGCCTTCATTGGCGGGCGACCTTGGATAAACTCAGC
AAAGACCCATGTGAGCGGACGCCTGAAAGGATGGGGGTATTAAAGCCCTA
CTTGAGCTCCTTGGCTGACTTATTTAAACCTGGTTGTGCAGCATATCTTC
GCATGAGTGTAGTTTGAGAGGTGGTGAAGGGGCTAGAACCCGACGAAGAA
GAAGGAGGGAGGCAGGAGGAGGCAGGAGTATTGATGCAACGAGACAAGCA
AATTCCTGGCAGTAATCGAATACTTTGACCTCACGTTTCATTTTCTCTGC
ACTAACCAACCCAGGGCCCGTCTCCACCGCTTCTTTTGTCGTCGACCAGC
ATGTTGACAAACGCCTTACCTGGGTCGTGGCTCTACACACAATCCATGCA
TGCTGCTCCTGCGGAAGATGAGGAGATGGCAGAGGGAGGAGCACGACACT
AAGGCGGTCCTTGGAAGCCTTTTCCGAGGCCACTGACTGCTCCACAGACC
GGGACGTTCCTAGTATTATACGGCAGATGCGTGCTTATGGTTGAATAGTG
ACAACGTGGAGGAGGAATGCCTAAAAATTGAGAGTGCTCAAACTACTTCC
GTAGAGGGGCAGTTATGAATCCCTCCAATTACTTCCTGGTAACCGCCTTA
ACGTCACTCCATCACCCTGCACACGTGATTGAAGACAGGTGGTCTACGCG
TGTATAGATGGTGGTTTTGGTGTTCATGCATTGGGACACATGTGGGTGGT
CGGGAAGGAGCGCAGAAAATCCTCTTCTCTTCTCGCGACCTACCGCGGTG
GCGTATTCATCTCCCTCGACTTTTTCCCTCCATACGTTTGCGATCTTGCC
CTAGTAGTTGATACAGTTATTGTTTCTTAACTTTGGAGGCATGGGGTGTC
CGCCAATGGATTCTGGAGTTTTTTGTTGGATTGTTTGTGGTGCATATTTG
GTGCTATGAGTAGTGCTGACGTTCTGTGCCTCGATCACGACCACGCATCC
TCCGTACAACACCTCGAAGCGTGTCTTGCTGTTTCCTACCTTGCCGAGCG
GCAGGCCACACGTCGCAAGACTGTTGTTTGTGTCCGTCGCTGACTGAAGT
GAAGGGTAGCATAACCCCTGCACCTTCCCTCCTCCCTTCTTCGTTTATTC
ACCCGTTCCCCTCTACTCTTTTCACCACTTATAGGTGAATGATCAACGCG
GCGCGGATTTATTCTTAGATAATTTGGGGGAAAATAAGTAGCGCGACGCC
ACATCGACGAGTCAAGACGAATCCCACAAGAGAGTGAGAGAGAGAAAAGA
GACATATGGCGTCCAGCAGTGGTGGCGGCAGCGGCGGCGGCTCGGTCATG
ATGGAAAAGTTCGAGCCCGAGCTGGATTTTCTACTTGGATCCCCGGGCTT
CTGGGCGAAATTGGGACACCATCCCTACTGGCCTGCGCGTGCGGCGTCGA
AGGAGGAGCAACGACGATACGCTTCGTACCAGCGGAAGGCGACTCAAGTG
TGTGTGAAATTCTTCGGCTCGAATGACATTGGCTGGATCCATCCGGCGAG
CTTGGTGGCGTTCGAGGAAGGGATGAGGAAATCTTTCAATACCAACGCCA
AAGTCACTAAAAATGCGAAATTTGTCGCTGGGGTTGAAGAGGCGCTGCGA
AATTGGGATGCCTGTCAAAGGGGAGGAGGAGGAGGATCGCTCCATGACCA
CTACAGGCATGGTGACGTTTTCCCCTCTGCTTGGCATCAACACTTGTCAC
TCTCGTCCACTGACGGGGTCGTGTCACCCATGCATACACACGCTTCTGCT
GATGTCACTGCTGCTACTGCTGGTGCTCCAGCTGGGGGAGGGGTGCCTCA
GAATGGACATATTGCGTTTCAATCTTCCTTGGGAGGGGGGCCGTGGGAGG
GCCAGCCACTCGAGACTTGCTTGTTACAAGAGCAATATCACAGTGATTTT
GCTCCGGGCTTGGGTATACTCGGTGGAGGTGCTGCTGCTGGGGGAGGGGG
GGGGAGGAAGGGGTGGAGGGAGCTCGTCGAGGCAGGGGACGACCTCCGCG
CGTGTCAGAAAACGCTGCAGCAGAATTGGAGGCGAAGAGGCGACGGGCCT
CGCTGA
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protein sequence of NO16G01590.1

>NO16G01590.1-protein ID=NO16G01590.1-protein|Name=NO16G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MASSSGGGSGGGSVMMEKFEPELDFLLGSPGFWAKLGHHPYWPARAASKE
EQRRYASYQRKATQVCVKFFGSNDIGWIHPASLVAFEEGMRKSFNTNAKV
TKNAKFVAGVEEALRNWDACQRGGGGGSLHDHYRHGDVFPSAWHQHLSLS
STDGVVSPMHTHASADVTAATAGAPAGGGVPQNGHIAFQSSLGGGPWEGQ
PLETCLLQEQYHSDFAPGLGILGGGAAAGGGGGRKGWRELVEAGDDLRAC
QKTLQQNWRRRGDGPR*
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mRNA from alignment at chr16:480046..482420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01590.1 ID=NO16G01590.1|Name=NO16G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp|location=Sequence derived from alignment at chr16:480046..482420+ (Nannochloropsis oceanica)
TTAGGGCACCTGTGCGGTCACTGTACAGGAAATGATTGTGAAAGCCAAAG
GTTAGCTCAAGAGTAGCCTTCATTGGCGGGCGACCTTGGATAAACTCAGC
AAAGACCCATGTGAGCGGACGCCTGAAAGGATGGGGGTATTAAAGCCCTA
CTTGAGCTCCTTGGCTGACTTATTTAAACCTGGTTGTGCAGCATATCTTC
GCATGAGTGTAGTTTGAGAGGTGGTGAAGGGGCTAGAACCCGACGAAGAA
GAAGGAGGGAGGCAGGAGGAGGCAGGAGTATTGATGCAACGAGACAAGCA
AATTCCTGGCAGTAATCGAATACTTTGACCTCACGTTTCATTTTCTCTGC
ACTAACCAACCCAGGGCCCGTCTCCACCGCTTCTTTTGTCGTCGACCAGC
ATGTTGACAAACGCCTTACCTGGGTCGTGGCTCTACACACAATCCATGTA
AGTCTTCTCACACCAGAGAGGGTTGCGCGAAGCACCACCTCCCTCGTGAT
CTGAGAAATGGAAAAGGCCATGCCCCAGGGCCATTCCCTCCCTACACCCA
CCTTATAGCCGCTGTGTCCATGTCAAGGCCTTGGGAGGGTCTGTATAACA
CGCTCCATAGAACGCGAGTCCTCATTTGGCTCCTAGTCCCTTATCCTACC
TTTATATTGGTCACAGGCATGCTGCTCCTGCGGAAGATGAGGAGATGGCA
GAGGGAGGAGCACGACACTAAGGCGGTCCTTGGAAGCCTTTTCCGAGGCC
ACTGACTGCTCCACAGACCGGGACGTTCCTAGTATTATACGGCAGATGCG
TGCTTATGGTTGAATAGTGACAACGTGGAGGAGGAATGCCTAAAAATTGA
GAGTGCTCAAACTACTTCCGTAGAGGGGCAGTTATGAATCCCTCCAATTA
CTTCCTGGTAACCGCCTTAACGTCACTCCATCACCCTGCACACGTGATTG
AAGACAGGTGGTCTACGCGTGTATAGATGGTGGTTTTGGTGTTCATGCAT
TGGGACACATGTGGGTGGTCGGGAAGGAGCGCAGAAAATCCTCTTCTCTT
CTCGCGACCTACCGCGGTGGCGTATTCATCTCCCTCGACTTTTTCCCTCC
ATACGTTTGCGATCTTGCCCTAGTAGTTGATACAGTTATTGTTTCTTAAC
TTTGGAGGCATGGGGTGTCCGCCAATGGATTCTGGAGTTTTTTGTTGGAT
TGTTTGTGGTGCATATTTGGTGCTATGAGTAGTGCTGACGTTCTGTGCCT
CGATCACGACCACGCATCCTCCGTACAACACCTCGAAGCGTGTCTTGCTG
TTTCCTACCTTGCCGAGCGGCAGGCCACACGTCGCAAGACTGTTGTTTGT
GTCCGTCGCTGACTGAAGTGAAGGGTAGCATAACCCCTGCACCTTCCCTC
CTCCCTTCTTCGTTTATTCACCCGTTCCCCTCTACTCTTTTCACCACTTA
TAGGTGAATGATCAACGCGGCGCGGATTTATTCTTAGATAATTTGGGGGA
AAATAAGTAGCGCGACGCCACATCGACGAGTCAAGACGAATCCCACAAGA
GAGTGAGAGAGAGAAAAGAGACATATGGCGTCCAGCAGTGGTGGCGGCAG
CGGCGGCGGCTCGGTCATGATGGAAAAGTTCGAGCCCGAGCTGGATTTTC
TACTTGGATCCCCGGGCTTCTGGGCGAAATTGGGACACCATCCCTACTGG
CCTGCGCGTGCGGCGTCGAAGGAGGAGCAACGACGATACGCTTCGTACCA
GCGGAAGGCGACTCAAGTGTGTGTGAAATTCTTCGGCTCGAATGACATTG
GCTGGATCCATCCGGCGAGCTTGGTGGCGTTCGAGGAAGGGATGAGGAAA
TCTTTCAATACCAACGCCAAAGTCACTAAAAATGCGAAATTTGTCGCTGG
GGTTGAAGAGGCGCTGCGAAATTGGGATGCCTGTCAAAGGGGAGGAGGAG
GAGGATCGCTCCATGACCACTACAGGCATGGTGACGTTTTCCCCTCTGCT
TGGCATCAACACTTGTCACTCTCGTCCACTGACGGGGTCGTGTCACCCAT
GCATACACACGCTTCTGCTGATGTCACTGCTGCTACTGCTGGTGCTCCAG
CTGGGGGAGGGGTGCCTCAGAATGGACATATTGCGTTTCAATCTTCCTTG
GGAGGGGGGCCGTGGGAGGGCCAGCCACTCGAGACTTGCTTGTTACAAGA
GCAATATCACAGTGATTTTGCTCCGGGCTTGGGTATACTCGGTGGAGGTG
CTGCTGCTGGGGGAGGGGGGGGGAGGAAGGGGTGGAGGGAGCTCGTCGAG
GCAGGGGACGACCTCCGCGCGTGTCAGAAAACGCTGCAGCAGAATTGGAG
GCGAAGAGGCGACGGGCCTCGCTGA
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Coding sequence (CDS) from alignment at chr16:480046..482420+

>NO16G01590.1 ID=NO16G01590.1|Name=NO16G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr16:480046..482420+ (Nannochloropsis oceanica)
ATGGCGTCCAGCAGTGGTGGCGGCAGCGGCGGCGGCTCGGTCATGATGGA
AAAGTTCGAGCCCGAGCTGGATTTTCTACTTGGATCCCCGGGCTTCTGGG
CGAAATTGGGACACCATCCCTACTGGCCTGCGCGTGCGGCGTCGAAGGAG
GAGCAACGACGATACGCTTCGTACCAGCGGAAGGCGACTCAAGTGTGTGT
GAAATTCTTCGGCTCGAATGACATTGGCTGGATCCATCCGGCGAGCTTGG
TGGCGTTCGAGGAAGGGATGAGGAAATCTTTCAATACCAACGCCAAAGTC
ACTAAAAATGCGAAATTTGTCGCTGGGGTTGAAGAGGCGCTGCGAAATTG
GGATGCCTGTCAAAGGGGAGGAGGAGGAGGATCGCTCCATGACCACTACA
GGCATGGTGACGTTTTCCCCTCTGCTTGGCATCAACACTTGTCACTCTCG
TCCACTGACGGGGTCGTGTCACCCATGCATACACACGCTTCTGCTGATGT
CACTGCTGCTACTGCTGGTGCTCCAGCTGGGGGAGGGGTGCCTCAGAATG
GACATATTGCGTTTCAATCTTCCTTGGGAGGGGGGCCGTGGGAGGGCCAG
CCACTCGAGACTTGCTTGTTACAAGAGCAATATCACAGTGATTTTGCTCC
GGGCTTGGGTATACTCGGTGGAGGTGCTGCTGCTGGGGGAGGGGGGGGGA
GGAAGGGGTGGAGGGAGCTCGTCGAGGCAGGGGACGACCTCCGCGCGTGT
CAGAAAACGCTGCAGCAGAATTGGAGGCGAAGAGGCGACGGGCCTCGCTG
A
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Synonyms
Publications