NO16G01520, NO16G01520 (gene) Nannochloropsis oceanica

Overview
NameNO16G01520
Unique NameNO16G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1876
Alignment locationchr16:461256..463131 -

Link to JBrowse

Properties
Property NameValue
DescriptionFilamentous hemagglutinin family N-terminal domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:461256..463131 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01520.1NO16G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593545gene_6034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01520.1NO16G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01520 ID=NO16G01520|Name=NO16G01520|organism=Nannochloropsis oceanica|type=gene|length=1876bp
CGAAGGGGCTGATGAAAACTTTTCTTCCACTTTTGCAGGGGCCTTATTTC
TTTCACACAACTACGGCATATTATTGCCAGTCTGGAATGCTCGCAAGGTC
CGCTTAGGGCCCATGAGACATCACTTCTCAGCCGCCCGGCGGTTCCCCCT
GGAGTTGCGATGAACACCCAGCGAGCTAAAGCATGTGTGAGATGCGCCTT
GAGACGATGCTCCCATCGCCCAGGTGCACTCTGGACCACTGAGCTTGTAC
TTTTGGCCAGTCGCTCCATGGCTTGCCTGCTGTGTAAATGTAGCATCGCG
CCGGCCATGGGCGCCAATGGGGACAATGCATGGCTGCCCCATAAATTCAA
ACTGGCAAAAGACTAACACGAGGCACCCTTCGCATGCCCAATCAATTTTT
TTTCTACAGGACTACTCGTCTCTACCACTATCATCCACTACCAACCAATA
CCATGCGTTCCTTGAAGCCCTCCCTGATGTGCTCCCTGGCCCTGTTTGCG
GCCGCCGTCTTGGCTGACGAGGGTGATACCTCGGCTCCCACGCCCGTCCC
GACCAAGGCCGCTTACACGGGGCTTACGCTTTCTCCCACCGCGTCCCCTA
CGAAGTCGGTCTACACGTCCCAGCCGACGTCTTCGATCGTGACGCTCGAG
GCACCGACGGTTGCCCCTACGGCAATTATCACGACTGCCCCTACTTCAGC
TCCCACTGTAGCACCCACGGCCGCTCCTACTGCTGTACCTACTGCCGCCC
CCACTTCAACCCCCACGGCCGCTCCTACTGCTGCTCCTACTGCTGCGCCT
ACTACAACCCCCACGGCCGCTCCTACGGCCGCTCCTACGGTTGCCCCCAC
AGCCGCTCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTTCCCGACAG
CGGCGCCCACCGCGATGATCTATACTCCTCCTCCCACCGCTGCCCCCACA
CTGGCGCCAACAGCCACACCCACGGCGGCCCCGACAGCCTCGCCCACGGT
TGCTCCTACGGTTTCCCCTACGGCGTCGCCCACCGAGATGATCTATACTC
CTCCTCCCACTACTGCCCCCACACTGGCGCCAACGGCTTCGCCCACGGCG
GCCCCGACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCAACCACCAC
TCCTACCGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGAGATTTCTT
GGGGCCCGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAACGCCGTCA
CCGACCGAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCAAATGCGGT
AGATGAACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCCCGCTCCCA
CGGTGTTGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCCGAGGAAGC
GCCTAGGTTAAGGAAAATGACTGCTTGGGTAACATGCCAGAGACATTGTG
GCGGTGAGAAGACGAGCGTGAGTGGAAGAGGGAAAAAAGAGTGAAGGGAA
TGAAGAAAAGGTTAAGAAGAGTGACGATAGAGAATATGGACTATACCTCT
CCGTTCTTGCTACGGGTAGGAAGAGAAGAATCGACTCTGAACCAAAGGGC
TGAAGGGAAAAGTCTTTTTATGATGTACTAGTCAGAAGGATAGGTATCTG
GCGCCTTTTCGCTCCTGGAGGTGGGGATACTTAGATCGCATAGCTCGCGC
GCAATAAGATAAAGGCTACTGACAGGTACGGTGATCATAGATTGACATGA
AAAATACCCATGGAAAGACCTACATGTACAAGGGCATGGGGGGAAATCAG
GACCCCCCCTTAAAAAAAGTACCAAAATAGGATAATGCACATCGCCGCAA
GCGAAAAAGGAGTGTACGACACAGGA
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protein sequence of NO16G01520.1

>NO16G01520.1-protein ID=NO16G01520.1-protein|Name=NO16G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MPNQFFFYRTTRLYHYHPLPTNTMRSLKPSLMCSLALFAAAVLADEGDTS
APTPVPTKAAYTGLTLSPTASPTKSVYTSQPTSSIVTLEAPTVAPTAIIT
TAPTSAPTVAPTAAPTAVPTAAPTSTPTAAPTAAPTAAPTTTPTAAPTAA
PTVAPTAAPTVAPTVAPTAFPTAAPTAMIYTPPPTAAPTLAPTATPTAAP
TASPTVAPTVSPTASPTEMIYTPPPTTAPTLAPTASPTAAPTASPTVAPT
AAPTTTPTAAATAAPTSIPEISWGPPEPTQTITLAPTPSPTEKSVYSAPA
SEPNAVDEPVVYSPAKPSSPAPTVLPTSATNGRHLRRGSA*
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Synonyms
Publications