NO16G01520.1, NO16G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01520.1
Unique NameNO16G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1876
Alignment locationchr16:461256..463131 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:461256..463131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G01520.1 vs.
Match: WP_009548948.1 (filamentous hemagglutinin N-terminal domain-containing protein [Burkholderiales bacterium JOSHI_001]; EHR69803.1 filamentous hemagglutinin family N-terminal domain protein [Burkholderiales bacterium JOSHI_001])

HSP 1 Score: 164.5 bits (415), Expect = 5.900e-37
Identity = 171/322 (53.11%), Postives = 192/322 (59.63%), Query Frame = 0 
Query:   18 PLPTNTMRSLKPSLMCSLALFAAAVLADEGDTSAPTPVPTKAAYTGLTLSPTASPTKSVYTSQPTSSIVTLEAPTVAPTAIITTAPTSAPTVAPTAAPTAVPTAAPTSTPTAAPTAAPTAAPTTTPTAAPTAAPTVAPTAAPTVAPTVAPTAFPTAAPTAM---IYTPPPTAAPTLAPTATPTAAPTASPTVAPTVSPTASPTEMIYTPPPTTAPTLAPTASPTAAPTASPTVAPTAAPTTTPTAAATAAPTSIPEISWG-------PPEPTQTITLAPTPSPTEKSVYSAPASEPNAVDEPVVYSPAKPSSPAPTVLPTSA 330
            P P + + +  P+   + A  +A   A    T APTP PT A     T +PTA+PT +  T  PT+      APT APT   T APT APT APT APT VPTAAPT  PTAAPT APT APT  PT APTAAPT APTAAPT APT APTA PT APTA      TP PTAAPT APT  PTAAPT +PT APT +PT +PT    TP PT APT APT +PTAAPT +PT APTAAPT  PT A TAAP   P +  G       PP P  T+  A +P+PT      AP   P A   P   +P    +PAPT  PT A
Sbjct: 2503 PKPPSQVPTAAPTAAPTPAPTSAPTAAP---TPAPTPAPTAAPTPAPTPAPTAAPTAAP-TPAPTA------APTPAPTPAPTAAPTPAPTAAPTPAPTPVPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTPAPTAAPTPAPTAAPTPAPTPAPT-AAPTPAPTPAPTAAPTPAPTAAPTPAPTPAPTAAPTPAPTPAPTAAP-GTPSLGNGSTTVGVTPPAPPSTVPSA-SPAPT-----PAPTPAPTAAPTP---APTAAPTPAPTTAPTPA 2803
The following BLAST results are available for this feature:
BLAST of NO16G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_009548948.15.900e-3753.11filamentous hemagglutinin N-terminal domain-contai... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01520NO16G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01520.1NO16G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01520.1.cds1NO16G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01520.1 ID=NO16G01520.1|Name=NO16G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
CGAAGGGGCTGATGAAAACTTTTCTTCCACTTTTGCAGGGGCCTTATTTC
TTTCACACAACTACGGCATATTATTGCCAGTCTGGAATGCTCGCAAGGTC
CGCTTAGGGCCCATGAGACATCACTTCTCAGCCGCCCGGCGGTTCCCCCT
GGAGTTGCGATGAACACCCAGCGAGCTAAAGCATGTGTGAGATGCGCCTT
GAGACGATGCTCCCATCGCCCAGGTGCACTCTGGACCACTGAGCTTGTAC
TTTTGGCCAGTCGCTCCATGGCTTGCCTGCTGTGTAAATGTAGCATCGCG
CCGGCCATGGGCGCCAATGGGGACAATGCATGGCTGCCCCATAAATTCAA
ACTGGCAAAAGACTAACACGAGGCACCCTTCGCATGCCCAATCAATTTTT
TTTCTACAGGACTACTCGTCTCTACCACTATCATCCACTACCAACCAATA
CCATGCGTTCCTTGAAGCCCTCCCTGATGTGCTCCCTGGCCCTGTTTGCG
GCCGCCGTCTTGGCTGACGAGGGTGATACCTCGGCTCCCACGCCCGTCCC
GACCAAGGCCGCTTACACGGGGCTTACGCTTTCTCCCACCGCGTCCCCTA
CGAAGTCGGTCTACACGTCCCAGCCGACGTCTTCGATCGTGACGCTCGAG
GCACCGACGGTTGCCCCTACGGCAATTATCACGACTGCCCCTACTTCAGC
TCCCACTGTAGCACCCACGGCCGCTCCTACTGCTGTACCTACTGCCGCCC
CCACTTCAACCCCCACGGCCGCTCCTACTGCTGCTCCTACTGCTGCGCCT
ACTACAACCCCCACGGCCGCTCCTACGGCCGCTCCTACGGTTGCCCCCAC
AGCCGCTCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTTCCCGACAG
CGGCGCCCACCGCGATGATCTATACTCCTCCTCCCACCGCTGCCCCCACA
CTGGCGCCAACAGCCACACCCACGGCGGCCCCGACAGCCTCGCCCACGGT
TGCTCCTACGGTTTCCCCTACGGCGTCGCCCACCGAGATGATCTATACTC
CTCCTCCCACTACTGCCCCCACACTGGCGCCAACGGCTTCGCCCACGGCG
GCCCCGACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCAACCACCAC
TCCTACCGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGAGATTTCTT
GGGGCCCGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAACGCCGTCA
CCGACCGAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCAAATGCGGT
AGATGAACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCCCGCTCCCA
CGGTGTTGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCCGAGGAAGC
GCCTAGGTTAAGGAAAATGACTGCTTGGGTAACATGCCAGAGACATTGTG
GCGGTGAGAAGACGAGCGTGAGTGGAAGAGGGAAAAAAGAGTGAAGGGAA
TGAAGAAAAGGTTAAGAAGAGTGACGATAGAGAATATGGACTATACCTCT
CCGTTCTTGCTACGGGTAGGAAGAGAAGAATCGACTCTGAACCAAAGGGC
TGAAGGGAAAAGTCTTTTTATGATGTACTAGTCAGAAGGATAGGTATCTG
GCGCCTTTTCGCTCCTGGAGGTGGGGATACTTAGATCGCATAGCTCGCGC
GCAATAAGATAAAGGCTACTGACAGGTACGGTGATCATAGATTGACATGA
AAAATACCCATGGAAAGACCTACATGTACAAGGGCATGGGGGGAAATCAG
GACCCCCCCTTAAAAAAAGTACCAAAATAGGATAATGCACATCGCCGCAA
GCGAAAAAGGAGTGTACGACACAGGA
back to top

protein sequence of NO16G01520.1

>NO16G01520.1-protein ID=NO16G01520.1-protein|Name=NO16G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MPNQFFFYRTTRLYHYHPLPTNTMRSLKPSLMCSLALFAAAVLADEGDTS
APTPVPTKAAYTGLTLSPTASPTKSVYTSQPTSSIVTLEAPTVAPTAIIT
TAPTSAPTVAPTAAPTAVPTAAPTSTPTAAPTAAPTAAPTTTPTAAPTAA
PTVAPTAAPTVAPTVAPTAFPTAAPTAMIYTPPPTAAPTLAPTATPTAAP
TASPTVAPTVSPTASPTEMIYTPPPTTAPTLAPTASPTAAPTASPTVAPT
AAPTTTPTAAATAAPTSIPEISWGPPEPTQTITLAPTPSPTEKSVYSAPA
SEPNAVDEPVVYSPAKPSSPAPTVLPTSATNGRHLRRGSA*
back to top

mRNA from alignment at chr16:461256..463131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01520.1 ID=NO16G01520.1|Name=NO16G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp|location=Sequence derived from alignment at chr16:461256..463131- (Nannochloropsis oceanica)
CGAAGGGGCTGATGAAAACTTTTCTTCCACTTTTGCAGGGGCCTTATTTC
TTTCACACAACTACGGCATATTATTGCCAGTCTGGAATGCTCGCAAGGTC
CGCTTAGGGCCCATGAGACATCACTTCTCAGCCGCCCGGCGGTTCCCCCT
GGAGTTGCGATGAACACCCAGCGAGCTAAAGCATGTGTGAGATGCGCCTT
GAGACGATGCTCCCATCGCCCAGGTGCACTCTGGACCACTGAGCTTGTAC
TTTTGGCCAGTCGCTCCATGGCTTGCCTGCTGTGTAAATGTAGCATCGCG
CCGGCCATGGGCGCCAATGGGGACAATGCATGGCTGCCCCATAAATTCAA
ACTGGCAAAAGACTAACACGAGGCACCCTTCGCATGCCCAATCAATTTTT
TTTCTACAGGACTACTCGTCTCTACCACTATCATCCACTACCAACCAATA
CCATGCGTTCCTTGAAGCCCTCCCTGATGTGCTCCCTGGCCCTGTTTGCG
GCCGCCGTCTTGGCTGACGAGGGTGATACCTCGGCTCCCACGCCCGTCCC
GACCAAGGCCGCTTACACGGGGCTTACGCTTTCTCCCACCGCGTCCCCTA
CGAAGTCGGTCTACACGTCCCAGCCGACGTCTTCGATCGTGACGCTCGAG
GCACCGACGGTTGCCCCTACGGCAATTATCACGACTGCCCCTACTTCAGC
TCCCACTGTAGCACCCACGGCCGCTCCTACTGCTGTACCTACTGCCGCCC
CCACTTCAACCCCCACGGCCGCTCCTACTGCTGCTCCTACTGCTGCGCCT
ACTACAACCCCCACGGCCGCTCCTACGGCCGCTCCTACGGTTGCCCCCAC
AGCCGCTCCTACGGTTGCCCCCACGGTTGCTCCTACGGCTTTCCCGACAG
CGGCGCCCACCGCGATGATCTATACTCCTCCTCCCACCGCTGCCCCCACA
CTGGCGCCAACAGCCACACCCACGGCGGCCCCGACAGCCTCGCCCACGGT
TGCTCCTACGGTTTCCCCTACGGCGTCGCCCACCGAGATGATCTATACTC
CTCCTCCCACTACTGCCCCCACACTGGCGCCAACGGCTTCGCCCACGGCG
GCCCCGACAGCCTCGCCCACGGTTGCTCCTACGGCGGCGCCAACCACCAC
TCCTACCGCTGCCGCCACGGCAGCCCCTACTTCGATCCCTGAGATTTCTT
GGGGCCCGCCCGAGCCGACCCAGACAATCACGCTTGCCCCAACGCCGTCA
CCGACCGAGAAATCCGTCTACTCTGCTCCCGCTTCAGAACCAAATGCGGT
AGATGAACCGGTTGTGTACAGCCCTGCCAAGCCCTCTAGCCCCGCTCCCA
CGGTGTTGCCCACGTCTGCGACAAACGGTCGTCATCTGCGCCGAGGAAGC
GCCTAGGTTAAGGAAAATGACTGCTTGGGTAACATGCCAGAGACATTGTG
GCGGTGAGAAGACGAGCGTGAGTGGAAGAGGGAAAAAAGAGTGAAGGGAA
TGAAGAAAAGGTTAAGAAGAGTGACGATAGAGAATATGGACTATACCTCT
CCGTTCTTGCTACGGGTAGGAAGAGAAGAATCGACTCTGAACCAAAGGGC
TGAAGGGAAAAGTCTTTTTATGATGTACTAGTCAGAAGGATAGGTATCTG
GCGCCTTTTCGCTCCTGGAGGTGGGGATACTTAGATCGCATAGCTCGCGC
GCAATAAGATAAAGGCTACTGACAGGTACGGTGATCATAGATTGACATGA
AAAATACCCATGGAAAGACCTACATGTACAAGGGCATGGGGGGAAATCAG
GACCCCCCCTTAAAAAAAGTACCAAAATAGGATAATGCACATCGCCGCAA
GCGAAAAAGGAGTGTACGACACAGGA
back to top

Coding sequence (CDS) from alignment at chr16:461256..463131-

>NO16G01520.1 ID=NO16G01520.1|Name=NO16G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr16:461256..463131- (Nannochloropsis oceanica)
ATGCCCAATCAATTTTTTTTCTACAGGACTACTCGTCTCTACCACTATCA
TCCACTACCAACCAATACCATGCGTTCCTTGAAGCCCTCCCTGATGTGCT
CCCTGGCCCTGTTTGCGGCCGCCGTCTTGGCTGACGAGGGTGATACCTCG
GCTCCCACGCCCGTCCCGACCAAGGCCGCTTACACGGGGCTTACGCTTTC
TCCCACCGCGTCCCCTACGAAGTCGGTCTACACGTCCCAGCCGACGTCTT
CGATCGTGACGCTCGAGGCACCGACGGTTGCCCCTACGGCAATTATCACG
ACTGCCCCTACTTCAGCTCCCACTGTAGCACCCACGGCCGCTCCTACTGC
TGTACCTACTGCCGCCCCCACTTCAACCCCCACGGCCGCTCCTACTGCTG
CTCCTACTGCTGCGCCTACTACAACCCCCACGGCCGCTCCTACGGCCGCT
CCTACGGTTGCCCCCACAGCCGCTCCTACGGTTGCCCCCACGGTTGCTCC
TACGGCTTTCCCGACAGCGGCGCCCACCGCGATGATCTATACTCCTCCTC
CCACCGCTGCCCCCACACTGGCGCCAACAGCCACACCCACGGCGGCCCCG
ACAGCCTCGCCCACGGTTGCTCCTACGGTTTCCCCTACGGCGTCGCCCAC
CGAGATGATCTATACTCCTCCTCCCACTACTGCCCCCACACTGGCGCCAA
CGGCTTCGCCCACGGCGGCCCCGACAGCCTCGCCCACGGTTGCTCCTACG
GCGGCGCCAACCACCACTCCTACCGCTGCCGCCACGGCAGCCCCTACTTC
GATCCCTGAGATTTCTTGGGGCCCGCCCGAGCCGACCCAGACAATCACGC
TTGCCCCAACGCCGTCACCGACCGAGAAATCCGTCTACTCTGCTCCCGCT
TCAGAACCAAATGCGGTAGATGAACCGGTTGTGTACAGCCCTGCCAAGCC
CTCTAGCCCCGCTCCCACGGTGTTGCCCACGTCTGCGACAAACGGTCGTC
ATCTGCGCCGAGGAAGCGCCTAG
back to top
Synonyms
Publications