NO16G01490, NO16G01490 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G01490 vs. NCBI_GenBank
Match: EWM23957.1 (chloroplast light harvesting protein isoform 4 [Nannochloropsis gaditana]) HSP 1 Score: 427.6 bits (1098), Expect = 2.400e-116 Identity = 212/219 (96.80%), Postives = 213/219 (97.26%), Query Frame = 0 Query: 1 MRTTACLLAGLGLTQAFLAPTLPSARSFSRNAVTMKLGSSAEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220 MRTTACLLAGLGLTQAFLAPTLPSARSFSR AVTMKLGSSA+GL GSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRP EALNKVV ERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIY KVQ RELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF Sbjct: 1 MRTTACLLAGLGLTQAFLAPTLPSARSFSRTAVTMKLGSSAQGLAGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 219
BLAST of NO16G01490 vs. NCBI_GenBank
Match: CEM36363.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 253.1 bits (645), Expect = 8.100e-64 Identity = 126/186 (67.74%), Postives = 146/186 (78.49%), Query Frame = 0 Query: 19 APTLPSARSFSRNAVTMKLGSSAEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQW 205 +P L S + R +MKLG++A+GL+GSD+E+PEFDPLGFTNN ETL+WYRAAELKHGRV MLAALGQ+VQ F+ LPD SGVF + D F A NKVV+ERP AAIQI LAIFAVE LG QAKPGQAPGDL +DP ++SDDPEI+E Q RELKNGRLAMI I MLVQE ++G GVI QW Sbjct: 28 SPLLKSPKRSLRTTPSMKLGTNAQGLIGSDLEWPEFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQW 213
BLAST of NO16G01490 vs. NCBI_GenBank
Match: XP_005852776.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU23058.1 light-harvesting protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 217.2 bits (552), Expect = 4.900e-53 Identity = 122/220 (55.45%), Postives = 150/220 (68.18%), Query Frame = 0 Query: 1 MRTTACLLAGLGLTQAFLAP-TLPSARSFSRNAVTMKLGSSAEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220 MR A L+A L AFLAP +LPS+ SF R + + S G+VGSD+E PEFDPLG N ETL WYRAAELKHGRV MLA++G +VQ Y LPD G F A +P +AL KV +ERPLAA+QI +AI A+E LG Q APGDL +DPL LK +DPE ++Q +ELKNGRLAM+A AG+ QE +TG G +EQ + G I+PFGDG+G F Sbjct: 1 MRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVSMDIS--GIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPD--GPFEA-SKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKY--TAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 213
BLAST of NO16G01490 vs. NCBI_GenBank
Match: EWM21948.1 (fucoxanthin chlorophyll a c binding protein [Nannochloropsis gaditana]) HSP 1 Score: 217.2 bits (552), Expect = 4.900e-53 Identity = 122/220 (55.45%), Postives = 150/220 (68.18%), Query Frame = 0 Query: 1 MRTTACLLAGLGLTQAFLAP-TLPSARSFSRNAVTMKLGSSAEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220 MR A L+A L AFLAP +LPS+ SF R + + S G+VGSD+E PEFDPLG N ETL WYRAAELKHGRV MLA++G +VQ Y LPD G F A +P +AL KV +ERPLAA+QI +AI A+E LG Q APGDL +DPL LK +DPE ++Q +ELKNGRLAM+A AG+ QE +TG G +EQ + G I+PFGDG+G F Sbjct: 14 MRVAAALIATLATASAFLAPASLPSSSSFRRTQGRVSMDIS--GIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPD--GPFEA-SKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKY--TAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 226
BLAST of NO16G01490 vs. NCBI_GenBank
Match: CEM00977.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 194.5 bits (493), Expect = 3.400e-46 Identity = 119/232 (51.29%), Postives = 148/232 (63.79%), Query Frame = 0 Query: 1 MRTTACLLAGLGLTQAFLAPTLPSARSFSRNAVTMKLGSS---AE----GLVGSDIEFPEFDPLGF-TNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLK-----SDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220 M+ A +LA L + P+ P++ S R ++ L S AE GLVGSDIE P FDP + +PETL WYRAAELKHGR+ MLAALG Q LPD SGVFS + AL KV NERP A IQ+ LAI A+E + N+A APGDLG+DPLNL+ + +PE +EK+Q RELKNGRLAM+A AGML+Q+ LTG +EQ + G I+PFGDG+G F Sbjct: 1 MKAVAVILALLAVVAHAFVPSPPASGSSVRGSLRQSLSPSRLQAEGPPGGLVGSDIEAPNFDPWKLAAGDLEPETLSWYRAAELKHGRICMLAALGLTTQEVVQLPDPSGVFSE-TKGIPALVKVANERPGAIIQLLLAIGAIE-VAALNRA-DSAAPGDLGFDPLNLQQKLGLASNPEAFEKMQLRELKNGRLAMVATAGMLIQQFLTGQATLEQLLSGHISPFGDGQGVF 229
BLAST of NO16G01490 vs. NCBI_GenBank
Match: CBN74050.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 189.5 bits (480), Expect = 1.100e-44 Identity = 103/186 (55.38%), Postives = 126/186 (67.74%), Query Frame = 0 Query: 19 APTLPSARSFSRNAVTMKLGSSAEGLVGSDIEF-PEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 204 A P AR+ S NAV +GLVG+DIE FDPLGF N PE + WYRAAELKHGR+ MLAA GQI QHF D SG+F + A+ +V +RPLA +QI LAIFAVE G Q + +A GDLG+DPL LK +PE +E+VQ RELKNGRLAM AI GM+VQE++TG+GV+E+ Sbjct: 47 AAQAPPARAVSTNAV--------DGLVGADIETGGPFDPLGFGKNCPPEQMQWYRAAELKHGRICMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPLAFVQIFLAIFAVEVYGNRKQ-EENEAGGDLGFDPLGLKPSNPESWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEK 223
BLAST of NO16G01490 vs. NCBI_GenBank
Match: CEM05081.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 182.6 bits (462), Expect = 1.400e-42 Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 0 Query: 22 LPSARSFSRNAVTMKLGSSAEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPF 213 L ++RS SR S A GLVG+DI+ P FDPLG + ETL WYRAAELKHGRVAMLAALG +VQ+ Y LPD+ F + P A+ K+ +ERPLA +QI AI A+E LG Q + + GDL WDPL +K +DPE + K+Q RELKNGRLAMI++ GM QE LT G I+Q + G++NPF Sbjct: 35 LRASRSPSRTMQMALDPSFAGGLVGNDIDAPNFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNIYQLPDSP--FQEAN-PINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQT-EDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQILTGNVNPF 221
BLAST of NO16G01490 vs. NCBI_GenBank
Match: EWM25359.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 160.6 bits (405), Expect = 5.500e-36 Identity = 87/163 (53.37%), Postives = 109/163 (66.87%), Query Frame = 0 Query: 41 AEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 204 A GL+GSD+E FDP + PE L WYR+AELKHGR+ MLAALG +VQ Y LPD VFS + +AL +V ERP A QI +AI A+E G A G+APGD G+DPLNLK E + ++Q +E+KNGRLAM+ +AGML+QE LT GV+EQ Sbjct: 143 AGGLIGSDVEAIRFDPWNLASERDPEGLAWYRSAELKHGRICMLAALGLLVQSSYHLPDE--VFS-NSKGLDALFQVSAERPQAIAQILIAIGAIEVAGL--AASEGKAPGDFGFDPLNLKPKTEEAFNELQLKEIKNGRLAMVGVAGMLIQETLTNQGVLEQ 300
BLAST of NO16G01490 vs. NCBI_GenBank
Match: AFA52562.1 (light-harvesting complex protein [Vaucheria litorea]) HSP 1 Score: 160.2 bits (404), Expect = 7.200e-36 Identity = 95/208 (45.67%), Postives = 125/208 (60.10%), Query Frame = 0 Query: 18 LAPTLPSARSFSRNAVTMKLGSSAEGLV---GSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHF-YTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKS--DDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220 +AP S++ S+ ++ + L GSD+E P +DP+ + + ETL WYR+AELKHGRVAMLA LG V LPD VF + F+AL ++ NERP A Q+ LAI A+EAL Q G+ PGDLG+DPL + + ++ ++ RELKNGRLAMI IAGM QE LTG GV EQ G +P GDG+G+F Sbjct: 70 VAPPATSSKFSSKKPAPVQQAPPSTELAIEFGSDVEAPFWDPVQLSADKSEETLAWYRSAELKHGRVAMLACLGTFVNGAGIALPDP--VFQGTSKSFDALTQIANERPAAVFQVILAIAAIEALSV--QLPEGRFPGDLGFDPLKQTAVYEGKGQFDALRLRELKNGRLAMIGIAGMWAQEALTGQGVFEQLAAGHYSPVGDGQGYF 273
BLAST of NO16G01490 vs. NCBI_GenBank
Match: EWM30498.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 151.0 bits (380), Expect = 4.400e-33 Identity = 105/220 (47.73%), Postives = 133/220 (60.45%), Query Frame = 0 Query: 1 MRTTACLLAGLGLTQAFLAPTLPSARSFSRNAVTMKLGSSAEGLVGSDIEF-PEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220 M+T LA LG++ AF+ PT P R +V M + ++GSD+E FDPLG + +L R ELKHGRVAMLA LG +VQ FY LPD VFS RP AL +V +ERP+A QI LAI A+E L Q +APGD+G+ + DD E + +Q +ELKNGRLAM+AI G VQE LTG G IEQ ++G +PFGDG+G F Sbjct: 1 MKTAFAFLALLGVSTAFM-PTAP--RMTRGRSVRMAVNE----MIGSDVETNGVFDPLGLAKD--EASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDE--VFS-NPRPLAALAQVYSERPVAFWQIFLAIGAIE-LTIGKQDTANRAPGDVGFGAAFI-PDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206 The following BLAST results are available for this feature:
BLAST of NO16G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01490 ID=NO16G01490|Name=NO16G01490|organism=Nannochloropsis oceanica|type=gene|length=1310bpback to top protein sequence of NO16G01490.1 >NO16G01490.1-protein ID=NO16G01490.1-protein|Name=NO16G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bpback to top Synonyms
Publications
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