NO16G01490.1, NO16G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01490.1
Unique NameNO16G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length660
Alignment locationchr16:453651..454960 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:453651..454960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01490.1 vs.
Match: EWM23957.1 (chloroplast light harvesting protein isoform 4 [Nannochloropsis gaditana])

HSP 1 Score: 427.6 bits (1098), Expect = 2.400e-116
Identity = 212/219 (96.80%), Postives = 213/219 (97.26%), Query Frame = 0 
Query:    1 MRTTACLLAGLGLTQAFLAPTLPSARSFSRNAVTMKLGSSAEGLVGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 220
            MRTTACLLAGLGLTQAFLAPTLPSARSFSR AVTMKLGSSA+GL GSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRP EALNKVV ERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIY KVQ RELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF
Sbjct:    1 MRTTACLLAGLGLTQAFLAPTLPSARSFSRTAVTMKLGSSAQGLAGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 219
The following BLAST results are available for this feature:
BLAST of NO16G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23957.12.400e-11696.80chloroplast light harvesting protein isoform 4 [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01490NO16G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01490.1NO16G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01490.1.cds1NO16G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01490.1.cds2NO16G01490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01490.1.cds3NO16G01490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01490.1.cds4NO16G01490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01490.1.cds5NO16G01490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01490.1 ID=NO16G01490.1|Name=NO16G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=660bp
ATGCGAACCACCGCCTGCCTGCTCGCCGGCCTCGGCCTCACCCAAGCCTT
CCTGGCCCCTACCCTCCCCAGCGCCCGCTCCTTCAGCCGCAACGCCGTGA
CCATGAAGTTGGGCTCTTCCGCAGAGGGCCTCGTCGGCAGCGACATCGAG
TTCCCCGAGTTTGACCCTCTGGGCTTCACCAACAACCCCAAGCCCGAGAC
TCTTGACTGGTACCGTGCCGCTGAGCTCAAGCACGGGCGCGTGGCCATGC
TTGCCGCCCTCGGCCAGATCGTGCAACACTTCTACACCCTGCCCGATGCC
TCGGGCGTCTTCTCCGCCGGCGATCGACCCTTTGAGGCCTTGAACAAGGT
GGTGAATGAGCGCCCGTTGGCGGCGATCCAGATTGGCCTGGCGATTTTCG
CGGTGGAGGCGCTGGGGCAATTTAACCAGGCCAAGCCTGGGCAGGCCCCT
GGGGACCTCGGCTGGGACCCCCTTAACTTGAAGAGCGATGACCCCGAGAT
CTACGAGAAGGTGCAAAAGCGCGAGTTGAAGAATGGACGCTTGGCCATGA
TTGCGATTGCCGGCATGCTTGTGCAGGAGAACCTGACGGGCCTCGGGGTG
ATTGAGCAATGGGTCAAGGGCGACATCAACCCCTTCGGTGATGGCCGCGG
CTTTTTCTAA
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protein sequence of NO16G01490.1

>NO16G01490.1-protein ID=NO16G01490.1-protein|Name=NO16G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MRTTACLLAGLGLTQAFLAPTLPSARSFSRNAVTMKLGSSAEGLVGSDIE
FPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDA
SGVFSAGDRPFEALNKVVNERPLAAIQIGLAIFAVEALGQFNQAKPGQAP
GDLGWDPLNLKSDDPEIYEKVQKRELKNGRLAMIAIAGMLVQENLTGLGV
IEQWVKGDINPFGDGRGFF*
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mRNA from alignment at chr16:453651..454960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01490.1 ID=NO16G01490.1|Name=NO16G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp|location=Sequence derived from alignment at chr16:453651..454960- (Nannochloropsis oceanica)
ATGCGAACCACCGCCTGCCTGCTCGCCGGCCTCGGCCTCACCCAAGCCTT
CCTGGCCCCTACCCTCCCCAGCGCCCGCTCCTTCAGCCGCAAGTGAGTAG
TTGTCTCATGTTGCCTGAAGTGTTCAAGGAGGTCTTAGAGCTGCAGAGAT
CGCTCACGCGCACCTGCCGTCGCTCTGCCATGGCTCTTGTCTCCTTTGTT
CTCTCACCCCTCATCCATCCTATTCAACCCTCACCACACAGCGCCGTGAC
CATGAAGTTGGGCTCTTCCGCAGAGGGCCTCGTCGGCAGCGACATCGAGT
TCCCCGAGTTTGACCCTCTGGTAAGTTTCTTGTTTCCCTGCTGGTTGAGC
CATTGGATTTCCCCTCCCTCCAATGCCCGCTGTAGTCCGTACTCTGTCCA
TTCCCAAAATAGTCAAGAATACTGTGTCTAATGTCTCGGCTTCTTATCTC
ATATTAATCACACAGGGCTTCACCAACAACCCCAAGCCCGAGACTCTTGA
CTGGTACCGTGCCGCTGAGCTCAAGCACGGGCGCGTGGCCATGCTTGCCG
CCCTCGGCCAGATCGTGCAACACTTCTACACCCTGCCCGATGCCTCGGGC
GTCTTCTCCGCCGGCGATCGACCCTTTGAGGCCTTGAACAAGGTGGTGAA
TGAGCGCCCGTTGGCGGCGATCCAGATTGGCCTGGCGATTTTCGCGGTGG
AGGCGCTGGGGCAATTTAACCAGGCCAAGCCTGGGCAGGCCCCTGGGGAC
CTCGGCTGGGACCCCCTTAACTTGAAGAGCGATGACCCCGAGATCTACGA
GAAGGTGCAAAAGCGCGAGTTGAAGAATGGACGCTTGGCCATGGTAGGTG
GTGGATGGTGGTGATGGCTGGGTTAGGTTGAAGGAGATGTTACGAGACCG
TTCAAAAGGGAACAATCGGAGTCTTTTTGCGGTGATGTACACAACCCGGA
GCGTTTTCTGATCTTCCGTTTTCCCTCCTTACTTCTTCCTCTCTCCCCTT
TCCCCCTTCCCCTCGTCTAGATTGCGATTGCCGGCATGCTTGTGCAGGAG
AACCTGACGGGCCTCGGGGTGATTGAGCAATGGGGTACGTCATGCAGTCA
ATTGGGAGGGAACGAAGAAGAAAGAGGCGAGAAGAAAGGATCGATGGACG
AAGAGAAGATCCGAAAAGAGTCCCAGAAATCGTGGATGAGAGGGCATGGC
ATGGCTCAAAACGATCACTTCTCGACCCTCCCTCCCGCCCTCCCTCTCCT
TCCCACCTCACAGTCAAGGGCGACATCAACCCCTTCGGTGATGGCCGCGG
CTTTTTCTAA
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Coding sequence (CDS) from alignment at chr16:453651..454960-

>NO16G01490.1 ID=NO16G01490.1|Name=NO16G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at chr16:453651..454960- (Nannochloropsis oceanica)
ATGCGAACCACCGCCTGCCTGCTCGCCGGCCTCGGCCTCACCCAAGCCTT
CCTGGCCCCTACCCTCCCCAGCGCCCGCTCCTTCAGCCGCAACGCCGTGA
CCATGAAGTTGGGCTCTTCCGCAGAGGGCCTCGTCGGCAGCGACATCGAG
TTCCCCGAGTTTGACCCTCTGGGCTTCACCAACAACCCCAAGCCCGAGAC
TCTTGACTGGTACCGTGCCGCTGAGCTCAAGCACGGGCGCGTGGCCATGC
TTGCCGCCCTCGGCCAGATCGTGCAACACTTCTACACCCTGCCCGATGCC
TCGGGCGTCTTCTCCGCCGGCGATCGACCCTTTGAGGCCTTGAACAAGGT
GGTGAATGAGCGCCCGTTGGCGGCGATCCAGATTGGCCTGGCGATTTTCG
CGGTGGAGGCGCTGGGGCAATTTAACCAGGCCAAGCCTGGGCAGGCCCCT
GGGGACCTCGGCTGGGACCCCCTTAACTTGAAGAGCGATGACCCCGAGAT
CTACGAGAAGGTGCAAAAGCGCGAGTTGAAGAATGGACGCTTGGCCATGA
TTGCGATTGCCGGCATGCTTGTGCAGGAGAACCTGACGGGCCTCGGGGTG
ATTGAGCAATGGGTCAAGGGCGACATCAACCCCTTCGGTGATGGCCGCGG
CTTTTTCTAA
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Synonyms
Publications