NO16G01470, NO16G01470 (gene) Nannochloropsis oceanica

Overview
NameNO16G01470
Unique NameNO16G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1888
Alignment locationchr16:449800..451687 -

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Properties
Property NameValue
DescriptionPstvd rna-biding virp1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:449800..451687 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036427Bromodomain-like_sf
IPR001487Bromodomain
Homology
BLAST of NO16G01470 vs. NCBI_GenBank
Match: EWM23943.1 (pstvd rna-biding virp1 [Nannochloropsis gaditana])

HSP 1 Score: 180.6 bits (457), Expect = 1.200e-41
Identity = 86/134 (64.18%), Postives = 104/134 (77.61%), Query Frame = 0
Query:  373 ISDKMVKRCNQMLKDLRDRGSHSLNWFLNPVTEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYKRACSELKTGYHDDASSVGSASAGKGGGEEG 507
            IS+KM +RC QMLKDL+DRG  + NWFL PVTE EAPGYF +IE PMDL  VD  LR K +RDLH+FAAD+RLVFTNAMRFN +ESSVY+DAQK + IFND+Y++AC++LKT   D  S   S S+G G G+ G
Sbjct:   10 ISEKMARRCWQMLKDLKDRGQQACNWFLRPVTEEEAPGYFQVIENPMDLATVDKKLRHKLHRDLHDFAADVRLVFTNAMRFNPAESSVYLDAQKLMGIFNDMYRKACADLKTNQSDAGSLASSVSSGGGIGKAG 143          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: EJK59739.1 (hypothetical protein THAOC_19998, partial [Thalassiosira oceanica])

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-12
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 0
Query:   86 GAPYLMGELLRDVHGDHIFKGSWSMS----YAGFHGPNPVTSEFELKHKSLDPDDTE--IFPFGGAYSGWYKLKEQGARKDVKHEERDVQLAFQRNLAGGYNVQGLGKNQYGQYKIKGLLTDVKTDT 207
            G   L G+L R + G H   G+W++      A       V  +FE +H S  P   E   FP  G+YSGW+ +  +   K VK  E+DV+L + +N  GGYNVQG G N YG++ +KGLLT   T T
Sbjct: 1341 GVVSLRGKLTRHIDGTHKIAGTWALGLDTILADPDNSKGVALDFEYEH-SPSPAAAEGLDFPSSGSYSGWFHILGENGCK-VKSPEKDVELKYVKNSQGGYNVQGQGSNVYGKFTVKGLLTQDGTIT 1465          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: XP_010943965.1 (PREDICTED: transcription factor GTE9 isoform X1 [Elaeis guineensis])

HSP 1 Score: 78.6 bits (192), Expect = 6.500e-11
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0
Query:  388 LRDRGSHSLNWFLN-PV--TEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYK 477
            LR   +HS  W  N PV   +   P YFSII KPMDL  V + L  K Y   H+FAAD++L F+NAMR+N   + V+I A++  NIF+  +K
Sbjct:  174 LRKLMNHSFGWVFNQPVDPVKLNIPDYFSIISKPMDLGTVKHKLSSKQYSSTHQFAADIKLTFSNAMRYNPPGNDVHIMAKELDNIFSSRWK 265          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: XP_010943966.1 (PREDICTED: transcription factor GTE9 isoform X2 [Elaeis guineensis])

HSP 1 Score: 78.6 bits (192), Expect = 6.500e-11
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 0
Query:  388 LRDRGSHSLNWFLN-PV--TEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYK 477
            LR   +HS  W  N PV   +   P YFSII KPMDL  V + L  K Y   H+FAAD++L F+NAMR+N   + V+I A++  NIF+  +K
Sbjct:  152 LRKLMNHSFGWVFNQPVDPVKLNIPDYFSIISKPMDLGTVKHKLSSKQYSSTHQFAADIKLTFSNAMRYNPPGNDVHIMAKELDNIFSSRWK 243          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: OVA19354.1 (Bromodomain [Macleaya cordata])

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-10
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 0
Query:  373 ISDKMVKRCNQMLKDLRDRGSHSLNWFLN-PV--TEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYK 477
            I +++ K C ++LK L    +HS  W  N PV   + + P YF II +PMDL  +   L  K Y D   FA+D+RL F+NAMR+N   + ++I A K   IF  ++K
Sbjct:  272 IDNRLTKECTEILKKLM---THSFGWVFNLPVDPVKLKIPDYFCIISEPMDLGTIKYKLEKKLYLDTKAFASDVRLTFSNAMRYNPPGNDIHIMASKLNIIFESLWK 375          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: XP_001735535.1 (bromodomain-containing factor [Entamoeba dispar SAW760] >EDR28252.1 bromodomain-containing factor, putative [Entamoeba dispar SAW760])

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-10
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 0
Query:  373 ISDKMVKRCNQMLKDLRDR-GSHSLNWFLNPVTEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYKRACSELKTG 486
            ++ + +++C ++ + L ++  S + N  ++PV   + P YFS+I++PMDL  + +NL DK Y    EF AD+ LVF NA+ FN  +S VY  A K    F  ++K A  E KTG
Sbjct:   95 MTSEELRKCKELNRKLMNQPESPAFNTPVDPVA-LQVPTYFSVIKRPMDLGTIKHNLSDKKYITKEEFQADMLLVFDNALLFNHPDSEVYHWAVKLKKQFETLWKNAFKEKKTG 207          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: OAY84781.1 (Transcription factor GTE9 [Ananas comosus])

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-10
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 0
Query:  378 VKRCNQMLKDLRDRGSHSLNWFLN-PV--TEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYK 477
            ++ C  +LK L    +H   W  N PV   +   P YFSII KPMDL  V+  L  K Y   H+FAAD+RL F+NAMR+N   + V+I A +  N+FN  +K
Sbjct:  152 MRLCANILKKLM---NHRYGWVFNQPVDPVKLNIPDYFSIISKPMDLGTVNKKLMSKLYVSTHQFAADVRLTFSNAMRYNPPGNDVHIMALELNNLFNLAWK 250          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: XP_020095812.1 (transcription factor GTE9-like [Ananas comosus])

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-10
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 0
Query:  378 VKRCNQMLKDLRDRGSHSLNWFLN-PV--TEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYK 477
            ++ C  +LK L    +H   W  N PV   +   P YFSII KPMDL  V+  L  K Y   H+FAAD+RL F+NAMR+N   + V+I A +  N+FN  +K
Sbjct:   65 MRLCANILKKLM---NHRYGWVFNQPVDPVKLNIPDYFSIISKPMDLGTVNKKLMSKLYVSTHQFAADVRLTFSNAMRYNPPGNDVHIMALELNNLFNLAWK 163          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: KMZ63855.1 (hypothetical protein ZOSMA_393G00070 [Zostera marina])

HSP 1 Score: 76.3 bits (186), Expect = 3.200e-10
Identity = 44/103 (42.72%), Postives = 56/103 (54.37%), Query Frame = 0
Query:  373 ISDKMVKRCNQMLKDLRDRGSHSLNWFLN-PVTEAE--APGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFN 473
            I D  VK+C  +L+ L    +H   W  N PV   +   P YFSII KPMDL  +   L    Y  + EF  D+RL F NAM++N S + V+I A K  NIFN
Sbjct:   79 IDDYQVKQCLLILEKLM---NHKFGWIFNQPVDPVKLMIPDYFSIISKPMDLGSIKKKLETMEYNFVTEFIDDVRLTFANAMQYNPSSNDVHIIANKLNNIFN 178          
BLAST of NO16G01470 vs. NCBI_GenBank
Match: XP_012547849.1 (homeotic protein female sterile isoform X4 [Bombyx mori])

HSP 1 Score: 75.9 bits (185), Expect = 4.200e-10
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0
Query:  378 VKRCNQMLKDLRDRGSHSLNW-FLNPVTEAEAPG---YFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYKRACSE 482
            +K CN++LK+L  +      W F  PV +AE  G   YF II+KPMDL  V N +  +AY+   EFAAD+RL+FTN  ++N  +  V   A+K  ++F   Y +   E
Sbjct:  377 LKSCNEILKELFSKKHSGYAWPFYKPV-DAELLGLHDYFDIIKKPMDLGTVKNKMDGRAYKSAAEFAADVRLIFTNCYKYNPPDHDVVAMARKLQDVFEMRYAKIPDE 483          
The following BLAST results are available for this feature:
BLAST of NO16G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23943.11.200e-4164.18pstvd rna-biding virp1 [Nannochloropsis gaditana][more]
EJK59739.11.200e-1239.37hypothetical protein THAOC_19998, partial [Thalass... [more]
XP_010943965.16.500e-1145.65PREDICTED: transcription factor GTE9 isoform X1 [E... [more]
XP_010943966.16.500e-1145.65PREDICTED: transcription factor GTE9 isoform X2 [E... [more]
OVA19354.11.100e-1039.25Bromodomain [Macleaya cordata][more]
XP_001735535.11.500e-1037.72bromodomain-containing factor [Entamoeba dispar SA... [more]
OAY84781.11.500e-1043.14Transcription factor GTE9 [Ananas comosus][more]
XP_020095812.11.500e-1043.14transcription factor GTE9-like [Ananas comosus][more]
KMZ63855.13.200e-1042.72hypothetical protein ZOSMA_393G00070 [Zostera mari... [more]
XP_012547849.14.200e-1039.81homeotic protein female sterile isoform X4 [Bombyx... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL154nonsL154Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR036ngnoR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01470.1NO16G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01470.1NO16G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01470 ID=NO16G01470|Name=NO16G01470|organism=Nannochloropsis oceanica|type=gene|length=1888bp
ATGGAGGACGACGACAAAACGgtgagtcaatagtgccgcttggcttggtt
gtgcgcgttgtgtggagagatggcggtggtttgcaaagtaggaagagcgc
ttgtctggccctggttaggaggttgctgccggctgtttcttctggcgcct
ctcgcagtacacacaatctatacacaaacccaccagctgccccacagaca
cgattagtgccggtacacttgatgggggggtggcaggggggcgttggtat
gcccataaggccgttgcaggttgctggcttcactggtcggagtacaaaac
ccactccctcactctgcacccacacctttcaccatgtacacagCATTCAT
CGATCGACGACAGCGTCATGGCTTCGGGCGGAGAGAGCGTTGTGTCGGCT
ACCAGCCGTCCCCCTTCTGTCGCCCCACAAGTTAGCAGCATCGCTCCCGG
TGGGGCTCCCTCCTCGACAGCCTCCACGGGTGGCGCCTCCGTGACCAAGA
GCGGAGGAGGTGGACGGGCAGGTGGACGGAACAAGGAACCGATGGACTTG
ACAGACTTGAAGGAGGGAAAGATCGAGGGGGCACCGTATCTTATGGGGGA
GCTGCTGCGGGATGTGCATGGAGATCACATTTTCAAGGGGTCCTGGTCGA
TGAGCTATGCAGGCTTCCATGGGCCGAACCCTGTGACGAGTGAATTCGAA
CTGAAGCATAAGAGTCTCGACCCGGACGACACTGAGATCTTCCCCTTTGG
CGGGGCCTACTCGGGTTGGTACAAGCTGAAAGAGCAGGGGGCGAGGAAAG
ACGTGAAGCACGAAGAACGCGACGTCCAACTGGCCTTCCAACGAAACCTT
GCAGGCGGATACAACGTCCAAGGGCTAGGTAAAAATCAATACGGACAATA
CAAAATAAAGGGCTTGCTCACCGACGTAAAGACCGATACGGCCACGTGCG
AAATTTTTCGTATCTACCAACCGGTTGCGCCTGTTCCTCCGGCTCCTCGA
GGCCCGCCTGCCCCTCCCGTTCATTCCTCCGCGGCCGCTGCCGCTGGTCG
GCGTGTCCCTCCCCCAAAACCTGCGTCCTTCTCGTCGTATTCCTCTGCTT
CAGCTACAGGTACTGTGCCGCCGCCGGCGAAGCCGGTACCGTCCATGGGG
AATGTTTCCTCCTCTTCTTTTGGATCTGCTCCTCCTTACGCGGCGCTTGC
TGGTGCCTCTCATCCGTCTTCCTACTCTTCGCAAGGTGGGCCACCGAGGC
TAAAAGCTCCCGGGGGTAGTGGAGACGGAGGGAACCGTGTCGGGGCTGCC
AAAAAGAGGGCGTCGTCTGGAAGCGTTGGGGGAGGAGGAGGAGGAGGTGG
TGGAGGAGGAGGGGGAGGGGCGAGTCGGAGGAGCACTGGTGGAGGTGGGG
GAGGGGTAAATGGTGGAGGAGGGGGTGGTAATAGGGTGATAAGTGATAAA
ATGGTGAAGAGGTGCAATCAGATGTTGAAGGACTTGAGGGACAGGGGGTC
GCATAGTTTGAATTGGTTTTTGAATCCAGTGACGGAAGCGGAGGCCCCGG
GGTACTTCAGCATTATTGAGAAGCCGATGGATTTGAGGAAGGTGGATAAC
AATCTGCGGGACAAGGCGTATCGGGACTTGCATGAGTTTGCGGCGGATTT
GCGGTTGGTGTTTACGAATGCCATGCGGTTCAATGCGTCGGAGTCGAGTG
TGTACATTGACGCCCAGAAGTCGTTAAATATTTTTAACGACATTTATAAA
CGGGCCTGCTCGGAGCTGAAGACAGGGTATCACGATGATGCCTCTTCAGT
AGGGTCGGCTTCGGCGGGCAAGGGTGGGGGGGAGGAGGGGGAAGAAGGCG
GTCTGAAGCGGTGGGTCCTAGAGCGGGCATGGCCATAA
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protein sequence of NO16G01470.1

>NO16G01470.1-protein ID=NO16G01470.1-protein|Name=NO16G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MEDDDKTHSSIDDSVMASGGESVVSATSRPPSVAPQVSSIAPGGAPSSTA
STGGASVTKSGGGGRAGGRNKEPMDLTDLKEGKIEGAPYLMGELLRDVHG
DHIFKGSWSMSYAGFHGPNPVTSEFELKHKSLDPDDTEIFPFGGAYSGWY
KLKEQGARKDVKHEERDVQLAFQRNLAGGYNVQGLGKNQYGQYKIKGLLT
DVKTDTATCEIFRIYQPVAPVPPAPRGPPAPPVHSSAAAAAGRRVPPPKP
ASFSSYSSASATGTVPPPAKPVPSMGNVSSSSFGSAPPYAALAGASHPSS
YSSQGGPPRLKAPGGSGDGGNRVGAAKKRASSGSVGGGGGGGGGGGGGGA
SRRSTGGGGGGVNGGGGGGNRVISDKMVKRCNQMLKDLRDRGSHSLNWFL
NPVTEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNA
MRFNASESSVYIDAQKSLNIFNDIYKRACSELKTGYHDDASSVGSASAGK
GGGEEGEEGGLKRWVLERAWP*
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Synonyms
Publications