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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr16 | genome | chr16:449800..451687 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO16G01470.1 vs.
Match: EWM23943.1 (pstvd rna-biding virp1 [Nannochloropsis gaditana]) HSP 1 Score: 189.9 bits (481), Expect = 2.000e-44 Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = 0
Query: 365 GGGGGNRVISDKMVKRCNQMLKDLRDRGSHSLNWFLNPVTEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNAMRFNASESSVYIDAQKSLNIFNDIYKRACSELKTGYHDDASSVGSASAGKGGGEEG 507
GG G NRVIS+KM +RC QMLKDL+DRG + NWFL PVTE EAPGYF +IE PMDL VD LR K +RDLH+FAAD+RLVFTNAMRFN +ESSVY+DAQK + IFND+Y++AC++LKT D S S S+G G G+ G
Sbjct: 2 GGNGANRVISEKMARRCWQMLKDLKDRGQQACNWFLRPVTEEEAPGYFQVIENPMDLATVDKKLRHKLHRDLHDFAADVRLVFTNAMRFNPAESSVYLDAQKLMGIFNDMYRKACADLKTNQSDAGSLASSVSSGGGIGKAG 143
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO16G01470.1 ID=NO16G01470.1|Name=NO16G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
ATGGAGGACGACGACAAAACGCATTCATCGATCGACGACAGCGTCATGGC
TTCGGGCGGAGAGAGCGTTGTGTCGGCTACCAGCCGTCCCCCTTCTGTCG
CCCCACAAGTTAGCAGCATCGCTCCCGGTGGGGCTCCCTCCTCGACAGCC
TCCACGGGTGGCGCCTCCGTGACCAAGAGCGGAGGAGGTGGACGGGCAGG
TGGACGGAACAAGGAACCGATGGACTTGACAGACTTGAAGGAGGGAAAGA
TCGAGGGGGCACCGTATCTTATGGGGGAGCTGCTGCGGGATGTGCATGGA
GATCACATTTTCAAGGGGTCCTGGTCGATGAGCTATGCAGGCTTCCATGG
GCCGAACCCTGTGACGAGTGAATTCGAACTGAAGCATAAGAGTCTCGACC
CGGACGACACTGAGATCTTCCCCTTTGGCGGGGCCTACTCGGGTTGGTAC
AAGCTGAAAGAGCAGGGGGCGAGGAAAGACGTGAAGCACGAAGAACGCGA
CGTCCAACTGGCCTTCCAACGAAACCTTGCAGGCGGATACAACGTCCAAG
GGCTAGGTAAAAATCAATACGGACAATACAAAATAAAGGGCTTGCTCACC
GACGTAAAGACCGATACGGCCACGTGCGAAATTTTTCGTATCTACCAACC
GGTTGCGCCTGTTCCTCCGGCTCCTCGAGGCCCGCCTGCCCCTCCCGTTC
ATTCCTCCGCGGCCGCTGCCGCTGGTCGGCGTGTCCCTCCCCCAAAACCT
GCGTCCTTCTCGTCGTATTCCTCTGCTTCAGCTACAGGTACTGTGCCGCC
GCCGGCGAAGCCGGTACCGTCCATGGGGAATGTTTCCTCCTCTTCTTTTG
GATCTGCTCCTCCTTACGCGGCGCTTGCTGGTGCCTCTCATCCGTCTTCC
TACTCTTCGCAAGGTGGGCCACCGAGGCTAAAAGCTCCCGGGGGTAGTGG
AGACGGAGGGAACCGTGTCGGGGCTGCCAAAAAGAGGGCGTCGTCTGGAA
GCGTTGGGGGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGGGGGAGGGGCG
AGTCGGAGGAGCACTGGTGGAGGTGGGGGAGGGGTAAATGGTGGAGGAGG
GGGTGGTAATAGGGTGATAAGTGATAAAATGGTGAAGAGGTGCAATCAGA
TGTTGAAGGACTTGAGGGACAGGGGGTCGCATAGTTTGAATTGGTTTTTG
AATCCAGTGACGGAAGCGGAGGCCCCGGGGTACTTCAGCATTATTGAGAA
GCCGATGGATTTGAGGAAGGTGGATAACAATCTGCGGGACAAGGCGTATC
GGGACTTGCATGAGTTTGCGGCGGATTTGCGGTTGGTGTTTACGAATGCC
ATGCGGTTCAATGCGTCGGAGTCGAGTGTGTACATTGACGCCCAGAAGTC
GTTAAATATTTTTAACGACATTTATAAACGGGCCTGCTCGGAGCTGAAGA
CAGGGTATCACGATGATGCCTCTTCAGTAGGGTCGGCTTCGGCGGGCAAG
GGTGGGGGGGAGGAGGGGGAAGAAGGCGGTCTGAAGCGGTGGGTCCTAGA
GCGGGCATGGCCATAA back to topprotein sequence of NO16G01470.1 >NO16G01470.1-protein ID=NO16G01470.1-protein|Name=NO16G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MEDDDKTHSSIDDSVMASGGESVVSATSRPPSVAPQVSSIAPGGAPSSTA
STGGASVTKSGGGGRAGGRNKEPMDLTDLKEGKIEGAPYLMGELLRDVHG
DHIFKGSWSMSYAGFHGPNPVTSEFELKHKSLDPDDTEIFPFGGAYSGWY
KLKEQGARKDVKHEERDVQLAFQRNLAGGYNVQGLGKNQYGQYKIKGLLT
DVKTDTATCEIFRIYQPVAPVPPAPRGPPAPPVHSSAAAAAGRRVPPPKP
ASFSSYSSASATGTVPPPAKPVPSMGNVSSSSFGSAPPYAALAGASHPSS
YSSQGGPPRLKAPGGSGDGGNRVGAAKKRASSGSVGGGGGGGGGGGGGGA
SRRSTGGGGGGVNGGGGGGNRVISDKMVKRCNQMLKDLRDRGSHSLNWFL
NPVTEAEAPGYFSIIEKPMDLRKVDNNLRDKAYRDLHEFAADLRLVFTNA
MRFNASESSVYIDAQKSLNIFNDIYKRACSELKTGYHDDASSVGSASAGK
GGGEEGEEGGLKRWVLERAWP* back to topmRNA from alignment at chr16:449800..451687- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO16G01470.1 ID=NO16G01470.1|Name=NO16G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at chr16:449800..451687- (Nannochloropsis oceanica)
ATGGAGGACGACGACAAAACGGTGAGTCAATAGTGCCGCTTGGCTTGGTT
GTGCGCGTTGTGTGGAGAGATGGCGGTGGTTTGCAAAGTAGGAAGAGCGC
TTGTCTGGCCCTGGTTAGGAGGTTGCTGCCGGCTGTTTCTTCTGGCGCCT
CTCGCAGTACACACAATCTATACACAAACCCACCAGCTGCCCCACAGACA
CGATTAGTGCCGGTACACTTGATGGGGGGGTGGCAGGGGGGCGTTGGTAT
GCCCATAAGGCCGTTGCAGGTTGCTGGCTTCACTGGTCGGAGTACAAAAC
CCACTCCCTCACTCTGCACCCACACCTTTCACCATGTACACAGCATTCAT
CGATCGACGACAGCGTCATGGCTTCGGGCGGAGAGAGCGTTGTGTCGGCT
ACCAGCCGTCCCCCTTCTGTCGCCCCACAAGTTAGCAGCATCGCTCCCGG
TGGGGCTCCCTCCTCGACAGCCTCCACGGGTGGCGCCTCCGTGACCAAGA
GCGGAGGAGGTGGACGGGCAGGTGGACGGAACAAGGAACCGATGGACTTG
ACAGACTTGAAGGAGGGAAAGATCGAGGGGGCACCGTATCTTATGGGGGA
GCTGCTGCGGGATGTGCATGGAGATCACATTTTCAAGGGGTCCTGGTCGA
TGAGCTATGCAGGCTTCCATGGGCCGAACCCTGTGACGAGTGAATTCGAA
CTGAAGCATAAGAGTCTCGACCCGGACGACACTGAGATCTTCCCCTTTGG
CGGGGCCTACTCGGGTTGGTACAAGCTGAAAGAGCAGGGGGCGAGGAAAG
ACGTGAAGCACGAAGAACGCGACGTCCAACTGGCCTTCCAACGAAACCTT
GCAGGCGGATACAACGTCCAAGGGCTAGGTAAAAATCAATACGGACAATA
CAAAATAAAGGGCTTGCTCACCGACGTAAAGACCGATACGGCCACGTGCG
AAATTTTTCGTATCTACCAACCGGTTGCGCCTGTTCCTCCGGCTCCTCGA
GGCCCGCCTGCCCCTCCCGTTCATTCCTCCGCGGCCGCTGCCGCTGGTCG
GCGTGTCCCTCCCCCAAAACCTGCGTCCTTCTCGTCGTATTCCTCTGCTT
CAGCTACAGGTACTGTGCCGCCGCCGGCGAAGCCGGTACCGTCCATGGGG
AATGTTTCCTCCTCTTCTTTTGGATCTGCTCCTCCTTACGCGGCGCTTGC
TGGTGCCTCTCATCCGTCTTCCTACTCTTCGCAAGGTGGGCCACCGAGGC
TAAAAGCTCCCGGGGGTAGTGGAGACGGAGGGAACCGTGTCGGGGCTGCC
AAAAAGAGGGCGTCGTCTGGAAGCGTTGGGGGAGGAGGAGGAGGAGGTGG
TGGAGGAGGAGGGGGAGGGGCGAGTCGGAGGAGCACTGGTGGAGGTGGGG
GAGGGGTAAATGGTGGAGGAGGGGGTGGTAATAGGGTGATAAGTGATAAA
ATGGTGAAGAGGTGCAATCAGATGTTGAAGGACTTGAGGGACAGGGGGTC
GCATAGTTTGAATTGGTTTTTGAATCCAGTGACGGAAGCGGAGGCCCCGG
GGTACTTCAGCATTATTGAGAAGCCGATGGATTTGAGGAAGGTGGATAAC
AATCTGCGGGACAAGGCGTATCGGGACTTGCATGAGTTTGCGGCGGATTT
GCGGTTGGTGTTTACGAATGCCATGCGGTTCAATGCGTCGGAGTCGAGTG
TGTACATTGACGCCCAGAAGTCGTTAAATATTTTTAACGACATTTATAAA
CGGGCCTGCTCGGAGCTGAAGACAGGGTATCACGATGATGCCTCTTCAGT
AGGGTCGGCTTCGGCGGGCAAGGGTGGGGGGGAGGAGGGGGAAGAAGGCG
GTCTGAAGCGGTGGGTCCTAGAGCGGGCATGGCCATAA back to topCoding sequence (CDS) from alignment at chr16:449800..451687- >NO16G01470.1 ID=NO16G01470.1|Name=NO16G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at chr16:449800..451687- (Nannochloropsis oceanica)
ATGGAGGACGACGACAAAACGCATTCATCGATCGACGACAGCGTCATGGC
TTCGGGCGGAGAGAGCGTTGTGTCGGCTACCAGCCGTCCCCCTTCTGTCG
CCCCACAAGTTAGCAGCATCGCTCCCGGTGGGGCTCCCTCCTCGACAGCC
TCCACGGGTGGCGCCTCCGTGACCAAGAGCGGAGGAGGTGGACGGGCAGG
TGGACGGAACAAGGAACCGATGGACTTGACAGACTTGAAGGAGGGAAAGA
TCGAGGGGGCACCGTATCTTATGGGGGAGCTGCTGCGGGATGTGCATGGA
GATCACATTTTCAAGGGGTCCTGGTCGATGAGCTATGCAGGCTTCCATGG
GCCGAACCCTGTGACGAGTGAATTCGAACTGAAGCATAAGAGTCTCGACC
CGGACGACACTGAGATCTTCCCCTTTGGCGGGGCCTACTCGGGTTGGTAC
AAGCTGAAAGAGCAGGGGGCGAGGAAAGACGTGAAGCACGAAGAACGCGA
CGTCCAACTGGCCTTCCAACGAAACCTTGCAGGCGGATACAACGTCCAAG
GGCTAGGTAAAAATCAATACGGACAATACAAAATAAAGGGCTTGCTCACC
GACGTAAAGACCGATACGGCCACGTGCGAAATTTTTCGTATCTACCAACC
GGTTGCGCCTGTTCCTCCGGCTCCTCGAGGCCCGCCTGCCCCTCCCGTTC
ATTCCTCCGCGGCCGCTGCCGCTGGTCGGCGTGTCCCTCCCCCAAAACCT
GCGTCCTTCTCGTCGTATTCCTCTGCTTCAGCTACAGGTACTGTGCCGCC
GCCGGCGAAGCCGGTACCGTCCATGGGGAATGTTTCCTCCTCTTCTTTTG
GATCTGCTCCTCCTTACGCGGCGCTTGCTGGTGCCTCTCATCCGTCTTCC
TACTCTTCGCAAGGTGGGCCACCGAGGCTAAAAGCTCCCGGGGGTAGTGG
AGACGGAGGGAACCGTGTCGGGGCTGCCAAAAAGAGGGCGTCGTCTGGAA
GCGTTGGGGGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGGGGGAGGGGCG
AGTCGGAGGAGCACTGGTGGAGGTGGGGGAGGGGTAAATGGTGGAGGAGG
GGGTGGTAATAGGGTGATAAGTGATAAAATGGTGAAGAGGTGCAATCAGA
TGTTGAAGGACTTGAGGGACAGGGGGTCGCATAGTTTGAATTGGTTTTTG
AATCCAGTGACGGAAGCGGAGGCCCCGGGGTACTTCAGCATTATTGAGAA
GCCGATGGATTTGAGGAAGGTGGATAACAATCTGCGGGACAAGGCGTATC
GGGACTTGCATGAGTTTGCGGCGGATTTGCGGTTGGTGTTTACGAATGCC
ATGCGGTTCAATGCGTCGGAGTCGAGTGTGTACATTGACGCCCAGAAGTC
GTTAAATATTTTTAACGACATTTATAAACGGGCCTGCTCGGAGCTGAAGA
CAGGGTATCACGATGATGCCTCTTCAGTAGGGTCGGCTTCGGCGGGCAAG
GGTGGGGGGGAGGAGGGGGAAGAAGGCGGTCTGAAGCGGTGGGTCCTAGA
GCGGGCATGGCCATAA back to top
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