NO16G01370, NO16G01370 (gene) Nannochloropsis oceanica

Overview
NameNO16G01370
Unique NameNO16G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length689
Alignment locationchr16:424876..425564 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:424876..425564 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01370 vs. NCBI_GenBank
Match: EWM23950.1 (hypothetical protein Naga_100027g8 [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 7.900e-69
Identity = 131/184 (71.20%), Postives = 145/184 (78.80%), Query Frame = 0 
Query:    1 MGDDPMKLQLMKNSNGVLSTELVGVDDDMQTFSYAYKFTTNQAGFLVRRYDVFDA--------------------------DKCKPPATWLDNHDISEWTPACKDFQKQWQQMVKDELLSCRKDLLANTLHYFRDLYKSNPDTKEALKDLMLVDEDDVDSVVNNFAGEFKKSKVTEKIWKSIKL 159
            MGD+PMKLQL+ NSNGVL+TELVGVDDD QTFSYAYKFTTNQ GFL RRYDVFDA                          +KCKP   WL  HDISEW PA +DFQKQWQQMVKDELLSCRKDLLANTLH+FRDL K NPDTKEAL+DL+LVD++DVDSVVNNFAGEFK++K+TEKIWKS+KL
Sbjct:    1 MGDEPMKLQLLSNSNGVLATELVGVDDDYQTFSYAYKFTTNQGGFLCRRYDVFDAVGLRCCDVRWALGKLRIVMLPDGYVTEKCKPSTEWLGKHDISEWAPASRDFQKQWQQMVKDELLSCRKDLLANTLHHFRDLCKDNPDTKEALRDLVLVDDEDVDSVVNNFAGEFKRTKLTEKIWKSVKL 184
The following BLAST results are available for this feature:
BLAST of NO16G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23950.17.900e-6971.20hypothetical protein Naga_100027g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003126NSK003126Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01370.1NO16G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100027g8gene6480Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01370.1NO16G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01370 ID=NO16G01370|Name=NO16G01370|organism=Nannochloropsis oceanica|type=gene|length=689bp
ATGGGAGACGACCCGATGAAGCTGCAGCTGATGAAGAACAGCAACGGCGT
GCTCTCAACAGAGCTTGTTGGGGTGGACGATGATATGCAGACCTTCTCCT
ATGCATACAAGTTCACCACCAATCAAGCTGGGTTCCTCGTTCGGCGGTAC
GATGTCTTCGATGCGgtaagtgcggactgcttatggtcgaccgtgcgcgc
atgtcggcattcctcactcgttgcgcctgaggattggcgacccgcatata
cctatgatgtctatgccacatcctctattcctttcttttacactcgttgg
ctgtctagccttcatcatccactccttcatcctcatggagcgctttctta
catcgccttcatctccttttcgtgtagGACAAATGCAAACCCCCGGCTAC
CTGGCTGGATAACCACGACATATCGGAATGGACGCCCGCCTGTAAGGACT
TCCAGAAGCAGTGGCAGCAGATGGTCAAAGACGAACTTTTGTCTTGCCGT
AAGGACCTTCTAGCAAACACGTTACATTATTTCCGTGACTTGTATAAGAG
CAACCCTGATACGAAAGAGGCCTTGAAGGATTTGATGCTTGTGGATGAGG
ATGATGTAGACTCAGTGGTGAACAATTTTGCAGGGGAGTTCAAGAAGTCC
AAGGTGACGGAGAAGATTTGGAAGAGCATCAAGCTCTAG
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protein sequence of NO16G01370.1

>NO16G01370.1-protein ID=NO16G01370.1-protein|Name=NO16G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MGDDPMKLQLMKNSNGVLSTELVGVDDDMQTFSYAYKFTTNQAGFLVRRY
DVFDADKCKPPATWLDNHDISEWTPACKDFQKQWQQMVKDELLSCRKDLL
ANTLHYFRDLYKSNPDTKEALKDLMLVDEDDVDSVVNNFAGEFKKSKVTE
KIWKSIKL*
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Synonyms
Publications