NO16G01370.1, NO16G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01370.1
Unique NameNO16G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr16:424876..425564 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:424876..425564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01370.1 vs.
Match: EWM23950.1 (hypothetical protein Naga_100027g8 [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 7.900e-69
Identity = 131/184 (71.20%), Postives = 145/184 (78.80%), Query Frame = 0 
Query:    1 MGDDPMKLQLMKNSNGVLSTELVGVDDDMQTFSYAYKFTTNQAGFLVRRYDVFDA--------------------------DKCKPPATWLDNHDISEWTPACKDFQKQWQQMVKDELLSCRKDLLANTLHYFRDLYKSNPDTKEALKDLMLVDEDDVDSVVNNFAGEFKKSKVTEKIWKSIKL 159
            MGD+PMKLQL+ NSNGVL+TELVGVDDD QTFSYAYKFTTNQ GFL RRYDVFDA                          +KCKP   WL  HDISEW PA +DFQKQWQQMVKDELLSCRKDLLANTLH+FRDL K NPDTKEAL+DL+LVD++DVDSVVNNFAGEFK++K+TEKIWKS+KL
Sbjct:    1 MGDEPMKLQLLSNSNGVLATELVGVDDDYQTFSYAYKFTTNQGGFLCRRYDVFDAVGLRCCDVRWALGKLRIVMLPDGYVTEKCKPSTEWLGKHDISEWAPASRDFQKQWQQMVKDELLSCRKDLLANTLHHFRDLCKDNPDTKEALRDLVLVDDEDVDSVVNNFAGEFKRTKLTEKIWKSVKL 184
The following BLAST results are available for this feature:
BLAST of NO16G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23950.17.900e-6971.20hypothetical protein Naga_100027g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01370NO16G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01370.1NO16G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01370.1.cds1NO16G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01370.1.cds2NO16G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01370.1 ID=NO16G01370.1|Name=NO16G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGGGAGACGACCCGATGAAGCTGCAGCTGATGAAGAACAGCAACGGCGT
GCTCTCAACAGAGCTTGTTGGGGTGGACGATGATATGCAGACCTTCTCCT
ATGCATACAAGTTCACCACCAATCAAGCTGGGTTCCTCGTTCGGCGGTAC
GATGTCTTCGATGCGGACAAATGCAAACCCCCGGCTACCTGGCTGGATAA
CCACGACATATCGGAATGGACGCCCGCCTGTAAGGACTTCCAGAAGCAGT
GGCAGCAGATGGTCAAAGACGAACTTTTGTCTTGCCGTAAGGACCTTCTA
GCAAACACGTTACATTATTTCCGTGACTTGTATAAGAGCAACCCTGATAC
GAAAGAGGCCTTGAAGGATTTGATGCTTGTGGATGAGGATGATGTAGACT
CAGTGGTGAACAATTTTGCAGGGGAGTTCAAGAAGTCCAAGGTGACGGAG
AAGATTTGGAAGAGCATCAAGCTCTAG
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protein sequence of NO16G01370.1

>NO16G01370.1-protein ID=NO16G01370.1-protein|Name=NO16G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MGDDPMKLQLMKNSNGVLSTELVGVDDDMQTFSYAYKFTTNQAGFLVRRY
DVFDADKCKPPATWLDNHDISEWTPACKDFQKQWQQMVKDELLSCRKDLL
ANTLHYFRDLYKSNPDTKEALKDLMLVDEDDVDSVVNNFAGEFKKSKVTE
KIWKSIKL*
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mRNA from alignment at chr16:424876..425564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01370.1 ID=NO16G01370.1|Name=NO16G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=689bp|location=Sequence derived from alignment at chr16:424876..425564+ (Nannochloropsis oceanica)
ATGGGAGACGACCCGATGAAGCTGCAGCTGATGAAGAACAGCAACGGCGT
GCTCTCAACAGAGCTTGTTGGGGTGGACGATGATATGCAGACCTTCTCCT
ATGCATACAAGTTCACCACCAATCAAGCTGGGTTCCTCGTTCGGCGGTAC
GATGTCTTCGATGCGGTAAGTGCGGACTGCTTATGGTCGACCGTGCGCGC
ATGTCGGCATTCCTCACTCGTTGCGCCTGAGGATTGGCGACCCGCATATA
CCTATGATGTCTATGCCACATCCTCTATTCCTTTCTTTTACACTCGTTGG
CTGTCTAGCCTTCATCATCCACTCCTTCATCCTCATGGAGCGCTTTCTTA
CATCGCCTTCATCTCCTTTTCGTGTAGGACAAATGCAAACCCCCGGCTAC
CTGGCTGGATAACCACGACATATCGGAATGGACGCCCGCCTGTAAGGACT
TCCAGAAGCAGTGGCAGCAGATGGTCAAAGACGAACTTTTGTCTTGCCGT
AAGGACCTTCTAGCAAACACGTTACATTATTTCCGTGACTTGTATAAGAG
CAACCCTGATACGAAAGAGGCCTTGAAGGATTTGATGCTTGTGGATGAGG
ATGATGTAGACTCAGTGGTGAACAATTTTGCAGGGGAGTTCAAGAAGTCC
AAGGTGACGGAGAAGATTTGGAAGAGCATCAAGCTCTAG
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Coding sequence (CDS) from alignment at chr16:424876..425564+

>NO16G01370.1 ID=NO16G01370.1|Name=NO16G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr16:424876..425564+ (Nannochloropsis oceanica)
ATGGGAGACGACCCGATGAAGCTGCAGCTGATGAAGAACAGCAACGGCGT
GCTCTCAACAGAGCTTGTTGGGGTGGACGATGATATGCAGACCTTCTCCT
ATGCATACAAGTTCACCACCAATCAAGCTGGGTTCCTCGTTCGGCGGTAC
GATGTCTTCGATGCGGACAAATGCAAACCCCCGGCTACCTGGCTGGATAA
CCACGACATATCGGAATGGACGCCCGCCTGTAAGGACTTCCAGAAGCAGT
GGCAGCAGATGGTCAAAGACGAACTTTTGTCTTGCCGTAAGGACCTTCTA
GCAAACACGTTACATTATTTCCGTGACTTGTATAAGAGCAACCCTGATAC
GAAAGAGGCCTTGAAGGATTTGATGCTTGTGGATGAGGATGATGTAGACT
CAGTGGTGAACAATTTTGCAGGGGAGTTCAAGAAGTCCAAGGTGACGGAG
AAGATTTGGAAGAGCATCAAGCTCTAG
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Synonyms
Publications