NO16G01360, NO16G01360 (gene) Nannochloropsis oceanica

Overview
NameNO16G01360
Unique NameNO16G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr16:421814..423583 +

Link to JBrowse

Properties
Property NameValue
DescriptionNa h antiporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:421814..423583 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:1902600proton transmembrane transport
GO:0055085transmembrane transport
GO:0006812cation transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015299solute:proton antiporter activity
GO:0015297antiporter activity
Homology
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BLAST of NO16G01360 vs. NCBI_GenBank
Match: EWM23953.1 (na+ h+ antiporter [Nannochloropsis gaditana])

HSP 1 Score: 332.0 bits (850), Expect = 3.700e-87
Identity = 253/592 (42.74%), Postives = 332/592 (56.08%), Query Frame = 0 
Query:    1 MVELFLGEEVVDDYITSTLTHLLFFDKAAILQEAKENPELLKSLWWYLAVHELHQYETYAAMELGEVGDLLADAYFVHVVKVKEVGGEGEEGTGGAEGRLHKSKSGGSLRLLSLATIRHQLEGMSVAAGQSLRLNSSATTSQKQLKPRHHVLRVSGTGKDVLVMNGKILGPSVVSTPKNVVSTEGGQEGSSCSGKADLLSLFDGNNKIGLGRDDASSSTAAAPAAEQNGTLRGRSNLGRPPTFSSLTASGTTTTCK--PILLSNFQGELWLEKGSIAFVIRREKTPSVIATAPTXXXXXXXXXXXXLAAVRKGMRRTLSRRSSVSNLSSPPLFPPVFSSAASSEVEMPAKGFPSNVSASSSNTKPLPRLQLSWDTTEEDSAHVHPPHAQPV-ISMLRTTTLPSRVSSQRPTAGAKAAGGRLGAATRRPMARGAQTVTLTDFLDSACGEIDVEAAKKALARGETLAGFLSRQALAEESVSADEDRGGGGKENGRGGRPGTPPSLKQRITDSVSSPLTALFSREEVKPSSFLKEEEGMKMGLDEGGRGGQQKXXXXXXXXXQPTALELMFMEGSGDGQGMKGGDEEVTHGDEQV 590
            +VE  LGEEV +DY+T+TLTHLLFFD+AAILQEA+ N  LLKSLWWY+AV EL QYE+Y  + +GEVG+LLADA+FV VV  ++VGG GE      EG+  ++++  SLRLLSL++IR QLE +S  AGQSLRL  S+T ++K  + RH +LRV G+ KDVL++ G I GPS+  TPKN +S   G+  +S + K DL S          G   +S S     ++ + G +     +G      SL+AS +T   K  P+LLS+FQGE+ LE GSI FVI+RE+  +  A AP              +    G R + SRR S        L P    S   S V++          A     +PL R +  W   EE       P   P+ IS  +T   PS  SSQ     +          T R  ++ AQTVTL DFLDSACGEIDVEAAKKALA+GETLAGFLSR+   ++S            E G GG  GTPP  KQR++ + SSPLT LFSR + +P+   + EE +  G D      +Q          +PTALELMF++ S  G G    + +V  GD+QV
Sbjct: 1088 LVESLLGEEVAEDYVTTTLTHLLFFDQAAILQEAESNFLLLKSLWWYVAVQELRQYESYEDLNVGEVGELLADAHFVQVVDGQDVGGMGE-----GEGKTWRTRNATSLRLLSLSSIRLQLENISTVAGQSLRLPHSSTAARKPSR-RHQLLRVWGSKKDVLILKGGIRGPSLAPTPKNSLS---GKHRNS-NSKEDLPS---------AGSGMSSESALIGKSSGKKGVVGASRLVGNSLKVDSLSASASTEPPKRPPMLLSDFQGEVALEVGSICFVIQREEASATAAPAPPVGRLITPAHPTPGSLA--GYRGSTSRRDSAG------LQPLKRGSEVVSGVDLTPL-----EPAYPPGERPLSRERPRWKQVEEMPLGGRAPFDVPIPISKKKT---PSSRSSQHVILSS-------SHKTPRSSSKWAQTVTLQDFLDSACGEIDVEAAKKALAKGETLAGFLSRRETMDKSA-----------EGGGGGSVGTPPRSKQRVSSTASSPLTTLFSRADFQPARRSQTEEVLLEGDDVA--QSRQARHSGQANGRKPTALELMFIDRSESG-GKGRKETQVARGDDQV 1623
The following BLAST results are available for this feature:
BLAST of NO16G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23953.13.700e-8742.74na+ h+ antiporter [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01360.1NO16G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593493gene_6018Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01360.1NO16G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01360 ID=NO16G01360|Name=NO16G01360|organism=Nannochloropsis oceanica|type=gene|length=1770bp
ATGGTGGAGTTGTTCCTGGGAGAAGAAGTGGTTGACGACTATATCACATC
GACTTTGACGCACTTATTATTTTTTGATAAAGCTGCCATCTTGCAGGAGG
CGAAAGAGAATCCGGAATTGCTGAAGAGTTTATGGTGGTATTTGGCTGTA
CATGAGTTGCATCAATATGAAACATATGCCGCGATGGAATTGGGGGAGGT
GGGTGACTTGTTAGCCGACGCGTATTTCGTGCATGTTGTCAAGGTGAAGG
AGGTAGGGGGGGAGGGAGAGGAAGGGACGGGGGGAGCAGAGGGTAGGTTG
CATAAATCGAAGAGTGGGGGGAGCTTGCGGTTGCTGAGCTTGGCGACGAT
TAGGCATCAATTAGAAGGGATGAGCGTGGCTGCAGGGCAATCGCTCCGAT
TGAATAGCTCGGCTACTACCTCACAGAAGCAATTAAAGCCCCGGCATCAT
GTTTTACGTGTATCGGGAACAGGGAAAGATGTGTTGGTCATGAATGGGAA
GATTCTTGGACCCAGCGTGGTAAGCACGCCTAAAAATGTTGTTTCTACGG
AGGGAGGACAGGAGGGGAGCAGCTGCAGCGGCAAAGCGGATCTGTTGTCG
TTGTTTGACGGAAATAACAAGATCGGACTTGGAAGAGACGATGCCTCGTC
ATCTACCGCTGCTGCTCCTGCCGCAGAGCAGAACGGGACGTTGCGAGGCC
GGTCTAATTTGGGTCGTCCCCCCACATTCTCCAGCCTGACAGCTTCCGGC
ACTACCACCACCTGCAAGCCTATTTTACTGAGTAACTTCCAAGGGGAGCT
TTGGCTGGAAAAAGGCAGCATCGCCTTTGTCATTCGTCGAGAGAAAACCC
CGTCGGTGATTGCGACAGCTCCAACAGCACCAGCACCAGCAACACCAACA
CCTGTCGGTCCGCTTGCTGCCGTCCGCAAAGGCATGCGCCGAACCCTATC
CCGCCGCAGCTCCGTCTCCAACCTCTCTTCTCCCCCCCTCTTTCCCCCCG
TCTTCTCTTCAGCTGCCTCGTCAGAAGTCGAAATGCCCGCAAAGGGATTT
CCCTCCAATGTTTCGGCTTCCTCCTCCAATACGAAGCCTCTGCCCCGTTT
GCAGCTCTCGTGGGACACAACGGAGGAGGACTCTGCCCATGTCCACCCCC
CACACGCTCAACCTGTCATATCCATGTTACGGACGACAACGCTCCCTTCC
CGAGTCTCCTCTCAGCGGCCAACGGCGGGAGCAAAAGCAGCAGGAGGGCG
ATTAGGAGCTGCGACGAGACGCCCCATGGCAAGGGGGGCTCAAACCGTTA
CGTTGACGGATTTTCTGGATTCGGCTTGTGGAGAGATAGATGTTGAAGCA
GCAAAGAAGGCGCTGGCTAGAGGAGAGACACTTGCTGGGTTTTTGTCTCG
ACAGGCTTTGGCGGAGGAATCTGTCTCGGCTGATGAGGATAGAGGAGGGG
GGGGAAAAGAGAATGGGAGAGGAGGAAGGCCTGGTACCCCTCCTTCCTTG
AAGCAGCGGATTACCGATTCGGTGAGCAGTCCCTTGACGGCACTGTTTTC
GAGGGAGGAGGTAAAACCATCGAGCTTTTTGAAGGAGGAAGAGGGGATGA
AAATGGGTTTGGATGAAGGAGGGAGAGGAGGTCAGCAAAAGAAGGGGAAG
GAGGAGGAACGAAAGCGGCAACCGACAGCTCTGGAGCTTATGTTTATGGA
GGGGTCTGGTGATGGGCAGGGTATGAAGGGAGGCGACGAGGAGGTAACAC
ATGGAGATGAGCAAGTTTAG
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protein sequence of NO16G01360.1

>NO16G01360.1-protein ID=NO16G01360.1-protein|Name=NO16G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MVELFLGEEVVDDYITSTLTHLLFFDKAAILQEAKENPELLKSLWWYLAV
HELHQYETYAAMELGEVGDLLADAYFVHVVKVKEVGGEGEEGTGGAEGRL
HKSKSGGSLRLLSLATIRHQLEGMSVAAGQSLRLNSSATTSQKQLKPRHH
VLRVSGTGKDVLVMNGKILGPSVVSTPKNVVSTEGGQEGSSCSGKADLLS
LFDGNNKIGLGRDDASSSTAAAPAAEQNGTLRGRSNLGRPPTFSSLTASG
TTTTCKPILLSNFQGELWLEKGSIAFVIRREKTPSVIATAPTAPAPATPT
PVGPLAAVRKGMRRTLSRRSSVSNLSSPPLFPPVFSSAASSEVEMPAKGF
PSNVSASSSNTKPLPRLQLSWDTTEEDSAHVHPPHAQPVISMLRTTTLPS
RVSSQRPTAGAKAAGGRLGAATRRPMARGAQTVTLTDFLDSACGEIDVEA
AKKALARGETLAGFLSRQALAEESVSADEDRGGGGKENGRGGRPGTPPSL
KQRITDSVSSPLTALFSREEVKPSSFLKEEEGMKMGLDEGGRGGQQKKGK
EEERKRQPTALELMFMEGSGDGQGMKGGDEEVTHGDEQV*
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Synonyms
Publications