NO16G01360.1, NO16G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01360.1
Unique NameNO16G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr16:421814..423583 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:421814..423583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01360.1 vs.
Match: EWM23953.1 (na+ h+ antiporter [Nannochloropsis gaditana])

HSP 1 Score: 339.0 bits (868), Expect = 3.000e-89
Identity = 263/595 (44.20%), Postives = 342/595 (57.48%), Query Frame = 0 
Query:    1 MVELFLGEEVVDDYITSTLTHLLFFDKAAILQEAKENPELLKSLWWYLAVHELHQYETYAAMELGEVGDLLADAYFVHVVKVKEVGGEGEEGTGGAEGRLHKSKSGGSLRLLSLATIRHQLEGMSVAAGQSLRLNSSATTSQKQLKPRHHVLRVSGTGKDVLVMNGKILGPSVVSTPKNVVSTEGGQEGSSCSGKADLLSLFDGNNKIGLGRDDASSSTAAAPAAEQNGTLRGRSNLGRPPTFSSLTASGTTTTCK--PILLSNFQGELWLEKGSIAFVIRREKTPSVIATAPTAP---APATPTPVGPLAAVRKGMRRTLSRRSSVSNLSSPPLFPPVFSSAASSEVEMPAKGFPSNVSASSSNTKPLPRLQLSWDTTEEDSAHVHPPHAQPV-ISMLRTTTLPSRVSSQRPTAGAKAAGGRLGAATRRPMARGAQTVTLTDFLDSACGEIDVEAAKKALARGETLAGFLSRQALAEESVSADEDRGGGGKENGRGGRPGTPPSLKQRITDSVSSPLTALFSREEVKPSSFLKEEEGMKMGLDEGGRGGQQKKGKEEERKRQPTALELMFMEGSGDGQGMKGGDEEVTHGDEQV 590
            +VE  LGEEV +DY+T+TLTHLLFFD+AAILQEA+ N  LLKSLWWY+AV EL QYE+Y  + +GEVG+LLADA+FV VV  ++VGG GE      EG+  ++++  SLRLLSL++IR QLE +S  AGQSLRL  S+T ++K  + RH +LRV G+ KDVL++ G I GPS+  TPKN +S   G+  +S S K DL S   G +         S S     ++ + G +     +G      SL+AS +T   K  P+LLS+FQGE+ LE GSI FVI+RE+  +  A AP       PA PTP G LA    G R + SRR S        L P    S   S V++          A     +PL R +  W   EE       P   P+ IS  +T   PS  SSQ     +          T R  ++ AQTVTL DFLDSACGEIDVEAAKKALA+GETLAGFLSR+   ++S            E G GG  GTPP  KQR++ + SSPLT LFSR + +P+   + EE +  G D      +Q +   +   R+PTALELMF++ S  G G    + +V  GD+QV
Sbjct: 1088 LVESLLGEEVAEDYVTTTLTHLLFFDQAAILQEAESNFLLLKSLWWYVAVQELRQYESYEDLNVGEVGELLADAHFVQVVDGQDVGGMGE-----GEGKTWRTRNATSLRLLSLSSIRLQLENISTVAGQSLRLPHSSTAARKPSR-RHQLLRVWGSKKDVLILKGGIRGPSLAPTPKNSLS---GKHRNSNS-KEDLPSAGSGMS---------SESALIGKSSGKKGVVGASRLVGNSLKVDSLSASASTEPPKRPPMLLSDFQGEVALEVGSICFVIQREEASATAAPAPPVGRLITPAHPTP-GSLA----GYRGSTSRRDSAG------LQPLKRGSEVVSGVDLTPLE-----PAYPPGERPLSRERPRWKQVEEMPLGGRAPFDVPIPISKKKT---PSSRSSQHVILSSSHK-------TPRSSSKWAQTVTLQDFLDSACGEIDVEAAKKALAKGETLAGFLSRRETMDKSA-----------EGGGGGSVGTPPRSKQRVSSTASSPLTTLFSRADFQPARRSQTEEVLLEGDDVA--QSRQARHSGQANGRKPTALELMFIDRSESG-GKGRKETQVARGDDQV 1623
The following BLAST results are available for this feature:
BLAST of NO16G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23953.13.000e-8944.20na+ h+ antiporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01360NO16G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01360.1NO16G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01360.1.cds1NO16G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01360.1 ID=NO16G01360.1|Name=NO16G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp
ATGGTGGAGTTGTTCCTGGGAGAAGAAGTGGTTGACGACTATATCACATC
GACTTTGACGCACTTATTATTTTTTGATAAAGCTGCCATCTTGCAGGAGG
CGAAAGAGAATCCGGAATTGCTGAAGAGTTTATGGTGGTATTTGGCTGTA
CATGAGTTGCATCAATATGAAACATATGCCGCGATGGAATTGGGGGAGGT
GGGTGACTTGTTAGCCGACGCGTATTTCGTGCATGTTGTCAAGGTGAAGG
AGGTAGGGGGGGAGGGAGAGGAAGGGACGGGGGGAGCAGAGGGTAGGTTG
CATAAATCGAAGAGTGGGGGGAGCTTGCGGTTGCTGAGCTTGGCGACGAT
TAGGCATCAATTAGAAGGGATGAGCGTGGCTGCAGGGCAATCGCTCCGAT
TGAATAGCTCGGCTACTACCTCACAGAAGCAATTAAAGCCCCGGCATCAT
GTTTTACGTGTATCGGGAACAGGGAAAGATGTGTTGGTCATGAATGGGAA
GATTCTTGGACCCAGCGTGGTAAGCACGCCTAAAAATGTTGTTTCTACGG
AGGGAGGACAGGAGGGGAGCAGCTGCAGCGGCAAAGCGGATCTGTTGTCG
TTGTTTGACGGAAATAACAAGATCGGACTTGGAAGAGACGATGCCTCGTC
ATCTACCGCTGCTGCTCCTGCCGCAGAGCAGAACGGGACGTTGCGAGGCC
GGTCTAATTTGGGTCGTCCCCCCACATTCTCCAGCCTGACAGCTTCCGGC
ACTACCACCACCTGCAAGCCTATTTTACTGAGTAACTTCCAAGGGGAGCT
TTGGCTGGAAAAAGGCAGCATCGCCTTTGTCATTCGTCGAGAGAAAACCC
CGTCGGTGATTGCGACAGCTCCAACAGCACCAGCACCAGCAACACCAACA
CCTGTCGGTCCGCTTGCTGCCGTCCGCAAAGGCATGCGCCGAACCCTATC
CCGCCGCAGCTCCGTCTCCAACCTCTCTTCTCCCCCCCTCTTTCCCCCCG
TCTTCTCTTCAGCTGCCTCGTCAGAAGTCGAAATGCCCGCAAAGGGATTT
CCCTCCAATGTTTCGGCTTCCTCCTCCAATACGAAGCCTCTGCCCCGTTT
GCAGCTCTCGTGGGACACAACGGAGGAGGACTCTGCCCATGTCCACCCCC
CACACGCTCAACCTGTCATATCCATGTTACGGACGACAACGCTCCCTTCC
CGAGTCTCCTCTCAGCGGCCAACGGCGGGAGCAAAAGCAGCAGGAGGGCG
ATTAGGAGCTGCGACGAGACGCCCCATGGCAAGGGGGGCTCAAACCGTTA
CGTTGACGGATTTTCTGGATTCGGCTTGTGGAGAGATAGATGTTGAAGCA
GCAAAGAAGGCGCTGGCTAGAGGAGAGACACTTGCTGGGTTTTTGTCTCG
ACAGGCTTTGGCGGAGGAATCTGTCTCGGCTGATGAGGATAGAGGAGGGG
GGGGAAAAGAGAATGGGAGAGGAGGAAGGCCTGGTACCCCTCCTTCCTTG
AAGCAGCGGATTACCGATTCGGTGAGCAGTCCCTTGACGGCACTGTTTTC
GAGGGAGGAGGTAAAACCATCGAGCTTTTTGAAGGAGGAAGAGGGGATGA
AAATGGGTTTGGATGAAGGAGGGAGAGGAGGTCAGCAAAAGAAGGGGAAG
GAGGAGGAACGAAAGCGGCAACCGACAGCTCTGGAGCTTATGTTTATGGA
GGGGTCTGGTGATGGGCAGGGTATGAAGGGAGGCGACGAGGAGGTAACAC
ATGGAGATGAGCAAGTTTAG
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protein sequence of NO16G01360.1

>NO16G01360.1-protein ID=NO16G01360.1-protein|Name=NO16G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MVELFLGEEVVDDYITSTLTHLLFFDKAAILQEAKENPELLKSLWWYLAV
HELHQYETYAAMELGEVGDLLADAYFVHVVKVKEVGGEGEEGTGGAEGRL
HKSKSGGSLRLLSLATIRHQLEGMSVAAGQSLRLNSSATTSQKQLKPRHH
VLRVSGTGKDVLVMNGKILGPSVVSTPKNVVSTEGGQEGSSCSGKADLLS
LFDGNNKIGLGRDDASSSTAAAPAAEQNGTLRGRSNLGRPPTFSSLTASG
TTTTCKPILLSNFQGELWLEKGSIAFVIRREKTPSVIATAPTAPAPATPT
PVGPLAAVRKGMRRTLSRRSSVSNLSSPPLFPPVFSSAASSEVEMPAKGF
PSNVSASSSNTKPLPRLQLSWDTTEEDSAHVHPPHAQPVISMLRTTTLPS
RVSSQRPTAGAKAAGGRLGAATRRPMARGAQTVTLTDFLDSACGEIDVEA
AKKALARGETLAGFLSRQALAEESVSADEDRGGGGKENGRGGRPGTPPSL
KQRITDSVSSPLTALFSREEVKPSSFLKEEEGMKMGLDEGGRGGQQKKGK
EEERKRQPTALELMFMEGSGDGQGMKGGDEEVTHGDEQV*
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mRNA from alignment at chr16:421814..423583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01360.1 ID=NO16G01360.1|Name=NO16G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at chr16:421814..423583+ (Nannochloropsis oceanica)
ATGGTGGAGTTGTTCCTGGGAGAAGAAGTGGTTGACGACTATATCACATC
GACTTTGACGCACTTATTATTTTTTGATAAAGCTGCCATCTTGCAGGAGG
CGAAAGAGAATCCGGAATTGCTGAAGAGTTTATGGTGGTATTTGGCTGTA
CATGAGTTGCATCAATATGAAACATATGCCGCGATGGAATTGGGGGAGGT
GGGTGACTTGTTAGCCGACGCGTATTTCGTGCATGTTGTCAAGGTGAAGG
AGGTAGGGGGGGAGGGAGAGGAAGGGACGGGGGGAGCAGAGGGTAGGTTG
CATAAATCGAAGAGTGGGGGGAGCTTGCGGTTGCTGAGCTTGGCGACGAT
TAGGCATCAATTAGAAGGGATGAGCGTGGCTGCAGGGCAATCGCTCCGAT
TGAATAGCTCGGCTACTACCTCACAGAAGCAATTAAAGCCCCGGCATCAT
GTTTTACGTGTATCGGGAACAGGGAAAGATGTGTTGGTCATGAATGGGAA
GATTCTTGGACCCAGCGTGGTAAGCACGCCTAAAAATGTTGTTTCTACGG
AGGGAGGACAGGAGGGGAGCAGCTGCAGCGGCAAAGCGGATCTGTTGTCG
TTGTTTGACGGAAATAACAAGATCGGACTTGGAAGAGACGATGCCTCGTC
ATCTACCGCTGCTGCTCCTGCCGCAGAGCAGAACGGGACGTTGCGAGGCC
GGTCTAATTTGGGTCGTCCCCCCACATTCTCCAGCCTGACAGCTTCCGGC
ACTACCACCACCTGCAAGCCTATTTTACTGAGTAACTTCCAAGGGGAGCT
TTGGCTGGAAAAAGGCAGCATCGCCTTTGTCATTCGTCGAGAGAAAACCC
CGTCGGTGATTGCGACAGCTCCAACAGCACCAGCACCAGCAACACCAACA
CCTGTCGGTCCGCTTGCTGCCGTCCGCAAAGGCATGCGCCGAACCCTATC
CCGCCGCAGCTCCGTCTCCAACCTCTCTTCTCCCCCCCTCTTTCCCCCCG
TCTTCTCTTCAGCTGCCTCGTCAGAAGTCGAAATGCCCGCAAAGGGATTT
CCCTCCAATGTTTCGGCTTCCTCCTCCAATACGAAGCCTCTGCCCCGTTT
GCAGCTCTCGTGGGACACAACGGAGGAGGACTCTGCCCATGTCCACCCCC
CACACGCTCAACCTGTCATATCCATGTTACGGACGACAACGCTCCCTTCC
CGAGTCTCCTCTCAGCGGCCAACGGCGGGAGCAAAAGCAGCAGGAGGGCG
ATTAGGAGCTGCGACGAGACGCCCCATGGCAAGGGGGGCTCAAACCGTTA
CGTTGACGGATTTTCTGGATTCGGCTTGTGGAGAGATAGATGTTGAAGCA
GCAAAGAAGGCGCTGGCTAGAGGAGAGACACTTGCTGGGTTTTTGTCTCG
ACAGGCTTTGGCGGAGGAATCTGTCTCGGCTGATGAGGATAGAGGAGGGG
GGGGAAAAGAGAATGGGAGAGGAGGAAGGCCTGGTACCCCTCCTTCCTTG
AAGCAGCGGATTACCGATTCGGTGAGCAGTCCCTTGACGGCACTGTTTTC
GAGGGAGGAGGTAAAACCATCGAGCTTTTTGAAGGAGGAAGAGGGGATGA
AAATGGGTTTGGATGAAGGAGGGAGAGGAGGTCAGCAAAAGAAGGGGAAG
GAGGAGGAACGAAAGCGGCAACCGACAGCTCTGGAGCTTATGTTTATGGA
GGGGTCTGGTGATGGGCAGGGTATGAAGGGAGGCGACGAGGAGGTAACAC
ATGGAGATGAGCAAGTTTAG
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Coding sequence (CDS) from alignment at chr16:421814..423583+

>NO16G01360.1 ID=NO16G01360.1|Name=NO16G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr16:421814..423583+ (Nannochloropsis oceanica)
ATGGTGGAGTTGTTCCTGGGAGAAGAAGTGGTTGACGACTATATCACATC
GACTTTGACGCACTTATTATTTTTTGATAAAGCTGCCATCTTGCAGGAGG
CGAAAGAGAATCCGGAATTGCTGAAGAGTTTATGGTGGTATTTGGCTGTA
CATGAGTTGCATCAATATGAAACATATGCCGCGATGGAATTGGGGGAGGT
GGGTGACTTGTTAGCCGACGCGTATTTCGTGCATGTTGTCAAGGTGAAGG
AGGTAGGGGGGGAGGGAGAGGAAGGGACGGGGGGAGCAGAGGGTAGGTTG
CATAAATCGAAGAGTGGGGGGAGCTTGCGGTTGCTGAGCTTGGCGACGAT
TAGGCATCAATTAGAAGGGATGAGCGTGGCTGCAGGGCAATCGCTCCGAT
TGAATAGCTCGGCTACTACCTCACAGAAGCAATTAAAGCCCCGGCATCAT
GTTTTACGTGTATCGGGAACAGGGAAAGATGTGTTGGTCATGAATGGGAA
GATTCTTGGACCCAGCGTGGTAAGCACGCCTAAAAATGTTGTTTCTACGG
AGGGAGGACAGGAGGGGAGCAGCTGCAGCGGCAAAGCGGATCTGTTGTCG
TTGTTTGACGGAAATAACAAGATCGGACTTGGAAGAGACGATGCCTCGTC
ATCTACCGCTGCTGCTCCTGCCGCAGAGCAGAACGGGACGTTGCGAGGCC
GGTCTAATTTGGGTCGTCCCCCCACATTCTCCAGCCTGACAGCTTCCGGC
ACTACCACCACCTGCAAGCCTATTTTACTGAGTAACTTCCAAGGGGAGCT
TTGGCTGGAAAAAGGCAGCATCGCCTTTGTCATTCGTCGAGAGAAAACCC
CGTCGGTGATTGCGACAGCTCCAACAGCACCAGCACCAGCAACACCAACA
CCTGTCGGTCCGCTTGCTGCCGTCCGCAAAGGCATGCGCCGAACCCTATC
CCGCCGCAGCTCCGTCTCCAACCTCTCTTCTCCCCCCCTCTTTCCCCCCG
TCTTCTCTTCAGCTGCCTCGTCAGAAGTCGAAATGCCCGCAAAGGGATTT
CCCTCCAATGTTTCGGCTTCCTCCTCCAATACGAAGCCTCTGCCCCGTTT
GCAGCTCTCGTGGGACACAACGGAGGAGGACTCTGCCCATGTCCACCCCC
CACACGCTCAACCTGTCATATCCATGTTACGGACGACAACGCTCCCTTCC
CGAGTCTCCTCTCAGCGGCCAACGGCGGGAGCAAAAGCAGCAGGAGGGCG
ATTAGGAGCTGCGACGAGACGCCCCATGGCAAGGGGGGCTCAAACCGTTA
CGTTGACGGATTTTCTGGATTCGGCTTGTGGAGAGATAGATGTTGAAGCA
GCAAAGAAGGCGCTGGCTAGAGGAGAGACACTTGCTGGGTTTTTGTCTCG
ACAGGCTTTGGCGGAGGAATCTGTCTCGGCTGATGAGGATAGAGGAGGGG
GGGGAAAAGAGAATGGGAGAGGAGGAAGGCCTGGTACCCCTCCTTCCTTG
AAGCAGCGGATTACCGATTCGGTGAGCAGTCCCTTGACGGCACTGTTTTC
GAGGGAGGAGGTAAAACCATCGAGCTTTTTGAAGGAGGAAGAGGGGATGA
AAATGGGTTTGGATGAAGGAGGGAGAGGAGGTCAGCAAAAGAAGGGGAAG
GAGGAGGAACGAAAGCGGCAACCGACAGCTCTGGAGCTTATGTTTATGGA
GGGGTCTGGTGATGGGCAGGGTATGAAGGGAGGCGACGAGGAGGTAACAC
ATGGAGATGAGCAAGTTTAG
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Synonyms
Publications