NO16G01230, NO16G01230 (gene) Nannochloropsis oceanica

Overview
NameNO16G01230
Unique NameNO16G01230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr16:381255..382679 -

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Properties
Property NameValue
DescriptionMuscular protein 20
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:381255..382679 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036872CH_dom_sf
IPR001715CH-domain
IPR003096SM22_calponin
Homology
BLAST of NO16G01230 vs. NCBI_GenBank
Match: EWM24002.1 (muscular protein 20 [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 1.200e-78
Identity = 147/185 (79.46%), Postives = 161/185 (87.03%), Query Frame = 0
Query:    5 HDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLT 190
            +D  LEEEVQ W+E VLKEPFPE +TFAEAL+DGTRLCRL+NE+QPGSVKK+N S MMFKQMENISLFLAACR+LGVPSFDCFETNDLFQ KNMQGVLRCLDSLGRTVQ  CPSF GPHLGAKMATKNER+FDPALL ASK AVNKLNMGS+ +MERK+ DIS SVTFGNE     + +  TFLT
Sbjct:    4 YDKNLEEEVQQWIEGVLKEPFPEDLTFAEALRDGTRLCRLMNEIQPGSVKKINSSTMMFKQMENISLFLAACRTLGVPSFDCFETNDLFQVKNMQGVLRCLDSLGRTVQAKCPSFAGPHLGAKMATKNERNFDPALLKASKAAVNKLNMGSAGYMERKSCDISTSVTFGNEHGRGDSGNLNTFLT 188          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: XP_008905462.1 (hypothetical protein PPTG_10984 [Phytophthora parasitica INRA-310] >ETI47080.1 hypothetical protein F443_08630 [Phytophthora parasitica P1569] >ETK87005.1 hypothetical protein L915_08466 [Phytophthora parasitica] >ETL40419.1 hypothetical protein L916_08395 [Phytophthora parasitica] >ETL93573.1 hypothetical protein L917_08293 [Phytophthora parasitica] >ETM46833.1 hypothetical protein L914_08344 [Phytophthora parasitica] >ETN08901.1 hypothetical protein PPTG_10984 [Phytophthora parasitica INRA-310] >ETO75735.1 hypothetical protein F444_08686 [Phytophthora parasitica P1976] >ETP16870.1 hypothetical protein F441_08607 [Phytophthora parasitica CJ01A1] >ETP44926.1 hypothetical protein F442_08563 [Phytophthora parasitica P10297] >KUF89052.1 Myophilin [Phytophthora nicotianae])

HSP 1 Score: 157.5 bits (397), Expect = 4.800e-35
Identity = 78/172 (45.35%), Postives = 111/172 (64.53%), Query Frame = 0
Query:    1 MTSTHDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTF 173
            +T++     EEE Q W+E+VL E F    +F ++LKDG  LC L+N+++PG + ++  S+M FKQMEN+S F+ ACRS+GV  FD FET DL+ +KN+  V++C+ +LGRT+Q   P + GP LG K +T N R F  A L  +  AV  L   S + MER   D SAS+T+
Sbjct:  283 VTTSSGPTAEEEAQEWIEAVLGEKFL--ASFGDSLKDGVMLCSLMNKIKPGLIPRIQTSSMPFKQMENVSAFVRACRSIGVAEFDLFETVDLYNQKNLGQVVQCIHALGRTIQKTMPEYNGPLLGVKESTVNPRQFSEAQLREAAAAVPVLANASQSLMERLPFDHSASITY 452          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: KUF89148.1 (Luc7 protein 3 [Phytophthora nicotianae])

HSP 1 Score: 157.5 bits (397), Expect = 4.800e-35
Identity = 78/172 (45.35%), Postives = 111/172 (64.53%), Query Frame = 0
Query:    1 MTSTHDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTF 173
            +T++     EEE Q W+E+VL E F    +F ++LKDG  LC L+N+++PG + ++  S+M FKQMEN+S F+ ACRS+GV  FD FET DL+ +KN+  V++C+ +LGRT+Q   P + GP LG K +T N R F  A L  +  AV  L   S + MER   D SAS+T+
Sbjct:  283 VTTSSGPTAEEEAQEWIEAVLGEKFL--ASFGDSLKDGVMLCSLMNKIKPGLIPRIQTSSMPFKQMENVSAFVRACRSIGVAEFDLFETVDLYNQKNLGQVVQCIHALGRTIQKTMPEYNGPLLGVKESTVNPRQFSEAQLREAAAAVPVLANASQSLMERLPFDHSASITY 452          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: POM75564.1 (IQ motif containing GTPase activating protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 156.4 bits (394), Expect = 1.100e-34
Identity = 79/163 (48.47%), Postives = 106/163 (65.03%), Query Frame = 0
Query:   10 EEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTF 173
            EEE Q W+E+VL E F    +F ++LKDG  LC L+N+++PG + ++  S M FKQMEN+S F+ ACRS+GV  FD FET DLF +KN+  V++C+ +LGRT+Q   P + GP LG K +T N R F  A L  +  AV  L   S + MER   D SAS+TF
Sbjct:  291 EEEAQEWIEAVLGEKFL--ASFGDSLKDGVILCTLMNKIKPGLIPRIQTSTMPFKQMENVSAFVRACRSIGVAEFDLFETVDLFNQKNLGQVVQCIHALGRTIQKTMPEYDGPLLGVKESTVNLRQFSEAQLREAAAAVPVLANASQSVMERLPFDHSASITF 451          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: OQR83072.1 (hypothetical protein ACHHYP_15175 [Achlya hypogyna])

HSP 1 Score: 155.6 bits (392), Expect = 1.800e-34
Identity = 90/196 (45.92%), Postives = 120/196 (61.22%), Query Frame = 0
Query:    5 HDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSSP 201
            +D A E E + W+E++       G  F   LKDG  LC L N V P +  KV+ S M FKQMEN++ F+ ACRS+GV  FD FET DLF++K++  V+RCL +LGRT+Q    ++ GP LG K AT+NER F  A L  ++ A + LNMGS AFMER   D++  VTFG +    ST+D P      N+T   +SP
Sbjct:   22 YDTAAETEARDWIEAITGRSI--GPDFGLGLKDGVILCELANAVDPANRIKVSTSTMPFKQMENVTAFIRACRSMGVMEFDLFETVDLFEQKDLGVVVRCLHALGRTLQKK-GTYNGPVLGVKEATRNERTFTEAQLAEARHATSLLNMGSHAFMERPNIDVTTGVTFGAD----STSDLP----LPNATPSSASP 206          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: POM60433.1 (IQ motif containing GTPase activating protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 155.2 bits (391), Expect = 2.400e-34
Identity = 78/163 (47.85%), Postives = 106/163 (65.03%), Query Frame = 0
Query:   10 EEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTF 173
            EEE Q W+E++L E F    +F ++LKDG  LC L+N+++PG + ++  S M FKQMEN+S F+ ACRS+GV  FD FET DLF +KN+  V++C+ +LGRT+Q   P + GP LG K +T N R F  A L  +  AV  L   S + MER   D SAS+TF
Sbjct:  291 EEEAQEWIEAMLGEKFL--ASFGDSLKDGVILCTLMNKIKPGLIPRIQTSTMPFKQMENVSAFVRACRSIGVAEFDLFETVDLFNQKNLGQVVQCIHALGRTIQKTMPEYDGPLLGVKESTVNLRQFSEAQLREAAAAVPVLANASQSVMERLPFDHSASITF 451          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: CCI42561.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 151.4 bits (381), Expect = 3.500e-33
Identity = 88/211 (41.71%), Postives = 120/211 (56.87%), Query Frame = 0
Query:    1 MTSTHDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNEC------VGASTTDAPT-FLTTGNSTGMRSSPKKTE 205
            +  T D+ +E ++  W+E+V  E F +   F   LKDG  LC L+N + PG + K+ Q++  FK+MENIS F+ ACR LGV  FD FET DL   KN+  V+ C+ +LGR +Q N P F GP LG + AT N R F  A    +  AV +L MGS   MER   D S+SVTFG++       + +  T+  T  ++ GN    RSS  K E
Sbjct:  247 LLDTGDSTMEAQI--WIETVTGEKFKD--DFETTLKDGVLLCTLMNTIVPGMISKIEQASNPFKKMENISHFIKACRKLGVAEFDLFETIDLSDSKNISLVVNCIHALGRVIQKNYPEFKGPILGVREATANPRTFTAAQQKEANSAVPRLMMGSYGTMERATVDHSSSVTFGSDASKSGIKIESDATEMHTPPISEGNVDAKRSSDHKVE 453          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: XP_008620644.1 (hypothetical protein SDRG_16221 [Saprolegnia diclina VS20] >EQC25922.1 hypothetical protein SDRG_16221 [Saprolegnia diclina VS20])

HSP 1 Score: 150.2 bits (378), Expect = 7.700e-33
Identity = 87/195 (44.62%), Postives = 120/195 (61.54%), Query Frame = 0
Query:    5 HDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSS 200
            +D   E E + W+E++  +    G  F   LKDG  LC L N V P S  K++ S M FKQMEN++ F+ ACR +GV  FD FET DLF++K++  V+RCL +LGRT+Q    ++ GP LG K +T+NER F  A L  ++ A + LNMGS A MER   D++  VTFG +    STTD P  +++G S+   SS
Sbjct:   22 YDTNAEAEARDWIEAITGKAI--GPDFGLGLKDGVILCELANVVDPTSRIKISASTMPFKQMENVTAFIRACRGMGVMEFDLFETVDLFEQKDLGVVVRCLHALGRTLQKK-GTYNGPLLGVKESTRNERTFTEAQLAEARHATSLLNMGSQAIMERPNIDVTTGVTFGAD----STTDLPP-VSSGYSSPPTSS 208          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: XP_012206859.1 (hypothetical protein SPRG_12755 [Saprolegnia parasitica CBS 223.65] >KDO22472.1 hypothetical protein SPRG_12755 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 149.8 bits (377), Expect = 1.000e-32
Identity = 86/195 (44.10%), Postives = 120/195 (61.54%), Query Frame = 0
Query:    5 HDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSS 200
            +D   E E + W+E++  +    G  F   LKDG  LC L N V P S  K++ S M FKQMEN++ F+ ACR +GV  FD FET DLF++K++  V+RCL +LGRT+Q    ++ GP LG K +T+NER F  A L  ++ A + LNMGS A MER   D++  VTFG +    ST+D P  +++G S+   SS
Sbjct:   22 YDTNAEAEARDWIEAITGKAI--GPDFGLGLKDGVILCELANAVDPASRIKISTSTMPFKQMENVTAFIRACRGMGVMEFDLFETVDLFEQKDLGVVVRCLHALGRTLQKK-GTYNGPLLGVKESTRNERTFTEAQLAEARHATSLLNMGSQAIMERPNIDVTTGVTFGAD----STSDLPP-VSSGYSSPPSSS 208          
BLAST of NO16G01230 vs. NCBI_GenBank
Match: CCA27983.1 (conserved unknown protein putative, partial [Albugo laibachii Nc14])

HSP 1 Score: 148.7 bits (374), Expect = 2.200e-32
Identity = 82/203 (40.39%), Postives = 115/203 (56.65%), Query Frame = 0
Query:   12 EVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSSPKKTEGGREEIAPPV 215
            E Q W+E+V  E F +   F   LKDG  LC L+N++ PG + K+  ++  FK+MENIS F+ ACR LGV  FD FET DL + KN+  V+ C+ +LGRT+Q   P F GP LG + AT N R F  A    +  AV ++ MGS   MER   D S+SVTFG++   +   +   F       G+ S+ + +EG  +    P+
Sbjct:  274 EAQSWIETVTGEKFKD--DFETTLKDGVLLCTLMNKIVPGLIPKIENASNPFKKMENISHFIKACRKLGVAEFDLFETIDLSESKNISLVINCIHALGRTIQKTMPEFIGPTLGVREATANPRTFSEAQKKEANSAVPRMMMGSYGTMERSTVDQSSSVTFGSDAARSGKKNGSDF------AGVHST-RTSEGSADVAKSPI 467          
The following BLAST results are available for this feature:
BLAST of NO16G01230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24002.11.200e-7879.46muscular protein 20 [Nannochloropsis gaditana][more]
XP_008905462.14.800e-3545.35hypothetical protein PPTG_10984 [Phytophthora para... [more]
KUF89148.14.800e-3545.35Luc7 protein 3 [Phytophthora nicotianae][more]
POM75564.11.100e-3448.47IQ motif containing GTPase activating protein [Phy... [more]
OQR83072.11.800e-3445.92hypothetical protein ACHHYP_15175 [Achlya hypogyna... [more]
POM60433.12.400e-3447.85IQ motif containing GTPase activating protein [Phy... [more]
CCI42561.13.500e-3341.71unnamed protein product [Albugo candida][more]
XP_008620644.17.700e-3344.62hypothetical protein SDRG_16221 [Saprolegnia dicli... [more]
XP_012206859.11.000e-3244.10hypothetical protein SPRG_12755 [Saprolegnia paras... [more]
CCA27983.12.200e-3240.39conserved unknown protein putative, partial [Albug... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003111NSK003111Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01230.1NO16G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593450gene_6005Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g40gene6467Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01230.1NO16G01230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01230 ID=NO16G01230|Name=NO16G01230|organism=Nannochloropsis oceanica|type=gene|length=1425bp
ATGACAAGCACGCACGACAATGCCTTAGgtgcgtattgacaggggcttgg
gctcagagtgaagtttgggaaagagaatggcgagatctgtaggggcaacg
gaacgaagcggggggctatgcgcatggcgctacatgagtatgccaaggaa
gaataggccctcgatgccttgccacatcgtgcatcgccttgtgccttgtt
ctcggataaaaatagaggaggacgcttcaaactcactacgtaaggggaga
tgcataggcggggggaggatggatgatgtttacttgtgatcccctggaat
aaccgtagggccttgattttcagggtttccattttgtatggtgaaggcta
tgagtctctactttgatattctgccttcttgtacggccctcgcctacccc
gtcgaccctccgagcttttctgactttcccccttttctttttctcgtcga
acaacaaattacagAGGAGGAGGTTCAGCACTGGGTGGAAAGTGTGCTCA
AGGAACCCTTTCCTGAAGGGATGACCTTCGCTGAGGCCTTGAAGGATGGA
ACACGCTTGTGCCGGCTGATCAACGAGGTGCAGgtgtgtgtcgcgtgtgg
gtgggtcagtgggttgatcgggtgatttgtgtaaacttttgagaagcgta
tgattcaaaagtgccccaaagatgtgtggtggtgggtgcatcctagcatc
attcaatcaattttgttcctcatctgcacttcttttcactccttctcttt
agCCGGGCAGCGTCAAGAAGGTCAACCAGTCCGCCATGATGTTCAAGCAA
ATGGAGAATATCTCTCTCTTTCTGGCCGCCTGCCGATCCCTGGGGGTACC
AAGTTTTGACTGCTTCGAGACCAACGATTTGTTCCAAGgtactccgtcct
tctctttgtcttctttcttgtctcatccttgcgtccccgcctcgctctcc
ttgctctcgctctcttttgcataaccatcgctcaccttttaattactctc
ccggcctaccctattttcgtccagAAAAGAACATGCAAGGCGTCCTCCGG
TGCCTGGATTCCCTCGGCCGCACCGTGCAGACCAACTGCCCCTCCTTCCC
CGGCCCCCATCTTGGCGCCAAAATGGCCACAAAAAATGAGCGACATTTCG
ATCCTGCCCTGCTTAATGCAAGCAAAGGTGCTGTGAACAAATTGAACATG
GGATCCTCAGCTTTCATGGAGAGGAAAGCGCCAGATATCTCAGCTAGCGT
CACATTTGGGAATGAGTGCGTGGGGGCAAGTACTACGGATGCACCCACTT
TCTTGACGACAGGCAATTCGACAGGTATGAGGTCCTCGCCTAAAAAGACG
GAAGGGGGAAGGGAGGAGATTGCTCCGCCGGTGCCGGGAGCAGGGGCGGT
GGAGGGAGGAAAATTGGCCGAGTGA
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protein sequence of NO16G01230.1

>NO16G01230.1-protein ID=NO16G01230.1-protein|Name=NO16G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MTSTHDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQP
GSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQG
VLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNK
LNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSSP
KKTEGGREEIAPPVPGAGAVEGGKLAE*
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Synonyms
Publications