NO16G01230.1, NO16G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01230.1
Unique NameNO16G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr16:381255..382679 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:381255..382679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01230.1 vs.
Match: EWM24002.1 (muscular protein 20 [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 1.200e-78
Identity = 147/185 (79.46%), Postives = 161/185 (87.03%), Query Frame = 0 
Query:    5 HDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQPGSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQGVLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNKLNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLT 190
            +D  LEEEVQ W+E VLKEPFPE +TFAEAL+DGTRLCRL+NE+QPGSVKK+N S MMFKQMENISLFLAACR+LGVPSFDCFETNDLFQ KNMQGVLRCLDSLGRTVQ  CPSF GPHLGAKMATKNER+FDPALL ASK AVNKLNMGS+ +MERK+ DIS SVTFGNE     + +  TFLT
Sbjct:    4 YDKNLEEEVQQWIEGVLKEPFPEDLTFAEALRDGTRLCRLMNEIQPGSVKKINSSTMMFKQMENISLFLAACRTLGVPSFDCFETNDLFQVKNMQGVLRCLDSLGRTVQAKCPSFAGPHLGAKMATKNERNFDPALLKASKAAVNKLNMGSAGYMERKSCDISTSVTFGNEHGRGDSGNLNTFLT 188
The following BLAST results are available for this feature:
BLAST of NO16G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24002.11.200e-7879.46muscular protein 20 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01230NO16G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01230.1NO16G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01230.1.cds1NO16G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01230.1.cds2NO16G01230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01230.1.cds3NO16G01230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01230.1.cds4NO16G01230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01230.1 ID=NO16G01230.1|Name=NO16G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGACAAGCACGCACGACAATGCCTTAGAGGAGGAGGTTCAGCACTGGGT
GGAAAGTGTGCTCAAGGAACCCTTTCCTGAAGGGATGACCTTCGCTGAGG
CCTTGAAGGATGGAACACGCTTGTGCCGGCTGATCAACGAGGTGCAGCCG
GGCAGCGTCAAGAAGGTCAACCAGTCCGCCATGATGTTCAAGCAAATGGA
GAATATCTCTCTCTTTCTGGCCGCCTGCCGATCCCTGGGGGTACCAAGTT
TTGACTGCTTCGAGACCAACGATTTGTTCCAAGAAAAGAACATGCAAGGC
GTCCTCCGGTGCCTGGATTCCCTCGGCCGCACCGTGCAGACCAACTGCCC
CTCCTTCCCCGGCCCCCATCTTGGCGCCAAAATGGCCACAAAAAATGAGC
GACATTTCGATCCTGCCCTGCTTAATGCAAGCAAAGGTGCTGTGAACAAA
TTGAACATGGGATCCTCAGCTTTCATGGAGAGGAAAGCGCCAGATATCTC
AGCTAGCGTCACATTTGGGAATGAGTGCGTGGGGGCAAGTACTACGGATG
CACCCACTTTCTTGACGACAGGCAATTCGACAGGTATGAGGTCCTCGCCT
AAAAAGACGGAAGGGGGAAGGGAGGAGATTGCTCCGCCGGTGCCGGGAGC
AGGGGCGGTGGAGGGAGGAAAATTGGCCGAGTGA
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protein sequence of NO16G01230.1

>NO16G01230.1-protein ID=NO16G01230.1-protein|Name=NO16G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MTSTHDNALEEEVQHWVESVLKEPFPEGMTFAEALKDGTRLCRLINEVQP
GSVKKVNQSAMMFKQMENISLFLAACRSLGVPSFDCFETNDLFQEKNMQG
VLRCLDSLGRTVQTNCPSFPGPHLGAKMATKNERHFDPALLNASKGAVNK
LNMGSSAFMERKAPDISASVTFGNECVGASTTDAPTFLTTGNSTGMRSSP
KKTEGGREEIAPPVPGAGAVEGGKLAE*
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mRNA from alignment at chr16:381255..382679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01230.1 ID=NO16G01230.1|Name=NO16G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp|location=Sequence derived from alignment at chr16:381255..382679- (Nannochloropsis oceanica)
ATGACAAGCACGCACGACAATGCCTTAGGTGCGTATTGACAGGGGCTTGG
GCTCAGAGTGAAGTTTGGGAAAGAGAATGGCGAGATCTGTAGGGGCAACG
GAACGAAGCGGGGGGCTATGCGCATGGCGCTACATGAGTATGCCAAGGAA
GAATAGGCCCTCGATGCCTTGCCACATCGTGCATCGCCTTGTGCCTTGTT
CTCGGATAAAAATAGAGGAGGACGCTTCAAACTCACTACGTAAGGGGAGA
TGCATAGGCGGGGGGAGGATGGATGATGTTTACTTGTGATCCCCTGGAAT
AACCGTAGGGCCTTGATTTTCAGGGTTTCCATTTTGTATGGTGAAGGCTA
TGAGTCTCTACTTTGATATTCTGCCTTCTTGTACGGCCCTCGCCTACCCC
GTCGACCCTCCGAGCTTTTCTGACTTTCCCCCTTTTCTTTTTCTCGTCGA
ACAACAAATTACAGAGGAGGAGGTTCAGCACTGGGTGGAAAGTGTGCTCA
AGGAACCCTTTCCTGAAGGGATGACCTTCGCTGAGGCCTTGAAGGATGGA
ACACGCTTGTGCCGGCTGATCAACGAGGTGCAGGTGTGTGTCGCGTGTGG
GTGGGTCAGTGGGTTGATCGGGTGATTTGTGTAAACTTTTGAGAAGCGTA
TGATTCAAAAGTGCCCCAAAGATGTGTGGTGGTGGGTGCATCCTAGCATC
ATTCAATCAATTTTGTTCCTCATCTGCACTTCTTTTCACTCCTTCTCTTT
AGCCGGGCAGCGTCAAGAAGGTCAACCAGTCCGCCATGATGTTCAAGCAA
ATGGAGAATATCTCTCTCTTTCTGGCCGCCTGCCGATCCCTGGGGGTACC
AAGTTTTGACTGCTTCGAGACCAACGATTTGTTCCAAGGTACTCCGTCCT
TCTCTTTGTCTTCTTTCTTGTCTCATCCTTGCGTCCCCGCCTCGCTCTCC
TTGCTCTCGCTCTCTTTTGCATAACCATCGCTCACCTTTTAATTACTCTC
CCGGCCTACCCTATTTTCGTCCAGAAAAGAACATGCAAGGCGTCCTCCGG
TGCCTGGATTCCCTCGGCCGCACCGTGCAGACCAACTGCCCCTCCTTCCC
CGGCCCCCATCTTGGCGCCAAAATGGCCACAAAAAATGAGCGACATTTCG
ATCCTGCCCTGCTTAATGCAAGCAAAGGTGCTGTGAACAAATTGAACATG
GGATCCTCAGCTTTCATGGAGAGGAAAGCGCCAGATATCTCAGCTAGCGT
CACATTTGGGAATGAGTGCGTGGGGGCAAGTACTACGGATGCACCCACTT
TCTTGACGACAGGCAATTCGACAGGTATGAGGTCCTCGCCTAAAAAGACG
GAAGGGGGAAGGGAGGAGATTGCTCCGCCGGTGCCGGGAGCAGGGGCGGT
GGAGGGAGGAAAATTGGCCGAGTGA
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Coding sequence (CDS) from alignment at chr16:381255..382679-

>NO16G01230.1 ID=NO16G01230.1|Name=NO16G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr16:381255..382679- (Nannochloropsis oceanica)
ATGACAAGCACGCACGACAATGCCTTAGAGGAGGAGGTTCAGCACTGGGT
GGAAAGTGTGCTCAAGGAACCCTTTCCTGAAGGGATGACCTTCGCTGAGG
CCTTGAAGGATGGAACACGCTTGTGCCGGCTGATCAACGAGGTGCAGCCG
GGCAGCGTCAAGAAGGTCAACCAGTCCGCCATGATGTTCAAGCAAATGGA
GAATATCTCTCTCTTTCTGGCCGCCTGCCGATCCCTGGGGGTACCAAGTT
TTGACTGCTTCGAGACCAACGATTTGTTCCAAGAAAAGAACATGCAAGGC
GTCCTCCGGTGCCTGGATTCCCTCGGCCGCACCGTGCAGACCAACTGCCC
CTCCTTCCCCGGCCCCCATCTTGGCGCCAAAATGGCCACAAAAAATGAGC
GACATTTCGATCCTGCCCTGCTTAATGCAAGCAAAGGTGCTGTGAACAAA
TTGAACATGGGATCCTCAGCTTTCATGGAGAGGAAAGCGCCAGATATCTC
AGCTAGCGTCACATTTGGGAATGAGTGCGTGGGGGCAAGTACTACGGATG
CACCCACTTTCTTGACGACAGGCAATTCGACAGGTATGAGGTCCTCGCCT
AAAAAGACGGAAGGGGGAAGGGAGGAGATTGCTCCGCCGGTGCCGGGAGC
AGGGGCGGTGGAGGGAGGAAAATTGGCCGAGTGA
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Synonyms
Publications