NO16G01190, NO16G01190 (gene) Nannochloropsis oceanica

Overview
NameNO16G01190
Unique NameNO16G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2329
Alignment locationchr16:371235..373563 +

Link to JBrowse

Properties
Property NameValue
DescriptionWW/Rsp5/WWP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:371235..373563 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Homology
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BLAST of NO16G01190 vs. NCBI_GenBank
Match: EWM23996.1 (WW/Rsp5/WWP [Nannochloropsis gaditana])

HSP 1 Score: 168.3 bits (425), Expect = 8.600e-38
Identity = 149/422 (35.31%), Postives = 193/422 (45.73%), Query Frame = 0 
Query:  122 RRKLVHKPLATFTEAELKRLSGRDTSLQSLLMECLVEINSMVL------------PDKVRKEGXXXXXXXXXXXXXXXXXXXXXREEMWEVEFIKLSARMDDWRAELLPSSSLVRRMKELGQRLAQQLLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTSVFDQTYQSYYWHNGLTGETSWENPHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPSPFSSFLPIGTAPGTINEQNSLLLYTGAQPLVHTAHDASALFDGSRTGVRAVRELGDGYFVLSFSNAAMAVKALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWIEGMRATFLRFVMPEDEPGKLSAVPVAVMEGE 532
            R+K+ H PL  F+EAEL+R+SG+D+SL+ L++ECL ++N+M+              DK+  +G                       E WEVEFIKLSAR++DWRA LLPSSSLVRR++ELG  +A Q+L E                                                 W++ +D TYQSYYWHN +TGET WE P        XXXXXXXXXXXXXXXXXXXX                                 PF++ LP+ T       QNSLLLY G  PL+ T  +AS+LF G+  G+R VR LG GYFV+SF + A  V+AL                                                WI G ++TF+R V   DEPGK+ A+PV  + G+
Sbjct:  136 RQKIAHTPLVMFSEAELRRISGKDSSLRDLVVECLGKMNAMLAKYLNATKSDRSEADKLSGDGKSGFVGV----------------ENWEVEFIKLSARVEDWRAGLLPSSSLVRRVRELGATVAAQVLAE--ETLCHGLKEAVKKKEKEAEASGASMTEVAGVTHTSTIGPVAAPTTPVWSTAYDPTYQSYYWHNAVTGETRWERPSGAGTEMAXXXXXXXXXXXXXXXXXXXXPVL------------------------------PFANALPVQT-------QNSLLLYVGDPPLLQTGSEASSLFRGA--GLRHVRALGQGYFVVSFPSKAAVVEAL-------MHQATTAGTVTMDVQSAQRGEKRRREEQEASKDVVERAGREWIPGDKSTFVRLVTEADEPGKIGAMPVVAVGGK 493
The following BLAST results are available for this feature:
BLAST of NO16G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23996.18.600e-3835.31WW/Rsp5/WWP [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003106NSK003106Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01190.1NO16G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100040g35gene6462Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01190.1NO16G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01190 ID=NO16G01190|Name=NO16G01190|organism=Nannochloropsis oceanica|type=gene|length=2329bp
ACAGAGATGGGCAGGAGGCCAGCGGGACAAGGGCCTCGGAGACCTGGTGG
TGCAAGCGGGGTGAAGTCACCGCGGCAGGGTGGGCTTGCGTCTGGgtaag
ctatagctgggaaggaaatggaaggaaggaacacacacgagtgagagtgc
gatcagctctggagcgtgttaaccttttgcgtcccgtcatccttctttca
cacatagACTTGTGGCGTACCACTCTGAATCGGAGGAGGAGGAGGAGGAG
CCTCAGGGAGAAGAGCAGGGAGGAAATGGCAGTCGCATGGGCAGCGCGAC
CACAGTCTCAGCAGCAGCAGCAGCTGCCGCAGCTACAGCGGAGGGGCAAG
GGCCACCAGAGAACGAGGAGGATACCTTGAGGGCCGCGGCCGAAGCAGAA
GACTTATTCAAGAGCCTGGAGGAAGAAATGCGGCAGGATGCGACTACAAC
GCCAGCTGCGGCAGCAGCACAGCCATCACCACGACGAAAGCTGGTGCATA
AGCCCTTGGCTACCTTCACGGAAGCGGAACTCAAACGTCTCAGCGGTAGG
GATACGTCGCTGCAATCGTTGCTGATGGAATGCTTGGTGGAAATTAATTC
AATGGTGTTGCCTGACAAGGTAAGAAAGGAGGGCGAGGACGAGGAAGAGG
ACAAGGAGGAAGGGGGTAAGAAGGAGGATGAAGAGACAATCCTGGCTCGG
GAAGAAATGTGGGAGGTGGAATTCATTAAGCTTTCGGCGCGGATGGATGA
TTGGAGGGCAGAGTTGCTCCCGTCTTCTTCTCTGGTGCGACGAATGAAGG
AGCTAGGACAACGCCTCGCGCAGCAATTGTTGGAGGAGGAGGAGAAGAAA
GAGAAGGCCAAGGCGGCTAGACAAAGACAGAAAGACGGTGAGAATGCACG
CTCGACATATATATCAGCGGTAGAAAAGGATTCAGTGGCAGCAGCAGCAG
CAGCAGCAGCAGAGGGGGAGGGAGGTATTGGCGTGTGGACAAGTGTGTTT
GACCAGACCTACCAGAGCTACTACTGGCACAACGGACTGACCGGGGAGAC
ATCCTGGGAGAATCCTCATGAAAACCAGCAGAAGCCACAGCAGCGACAGC
AGCAGCAATACCAACATCAACAACATTCGCAAGGAGAGGAGGCTGCGACC
GCTACCTCACCTGCCACTTCCACCTCCTCCTCTACGTTCCTCATGGCGAA
CCGCGCGACTGCAGCTGCAGCCGCAGGCACAGGCACGGTCATCCCTTCCC
CCTTCTCTTCCTTTCTTCCTATAGGCACCGCTCCTGGTACTATAAACGAG
CAGAACTCTCTTTTACTGTACACAGGGGCACAACCCCTTGTCCATACAGC
CCACGACGCAAGTGCCTTATTTGACGGGTCGAGGACGGGAGTGAGGGCTG
TCCGCGAGCTAGGAGATGGTTATTTTGTCTTGTCTTTTTCAAACGCTGCA
ATGGCTGTGAAGGCGCTGAAAAAACAATCAGCGAATGTTGTTGTTGTTGC
TGCTGCTTCCTCTGCTGCTGCTGCTGCTGGAGAATGGAATGGGAACGGCC
GTGCTTCAAAGAAGGTGGAAGAGGAGGAGGAGGAGGTTGTGGTGCAGCAG
GCGAGACGGTCGTGGATTGAAGGGATGAGGGCGACCTTTTTAAGATTTGT
GATGCCTGAGGATGAGCCAGGGAAACTTAGCGCAGTTCCTGTGGCGGTGA
TGGAGGGAGAGGAGATTGAGGAGAAAAAGGAGGAAGAAGAAGAGCAGCTG
GAAGAGCAGGGAGATGGCTTGCTAGTATCAGTGGGTGAGAGGGATGGCAG
AAATGGCTCTGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTGAAACGG
CAGCAGCAATTGATGAGATACTTGCAGAAGTCAATAAGCCCACCTATTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCTCAGGCCTTTTCCTCCTGCTCTAGCGACGAGTAGCA
CCCGGTCTAAGCATCCGAAAATTGTTTCATTGCCTCGAAAACGGAAGGGG
GGGGACCAGAGTGAGAGTGACGAGCAAGACATGGGAGAAGAAGAGGATGG
AGAGAGGAAGGAATATATGATGGCTGGTCTCAAGACGGAAGCGGCCGCGA
CTGCTAGAGCGGCCGCAGCCAAAGCGGCAAGGGCAGCAGCTGCTGCAGCT
GTGGCAGATGCAGTGGACTCTGTTGCGTTGAAGAAGAAGGGCAATAATAA
AAAGACAAAGCACTAGAATAGAATGCAGACACCATGTACAAAATAAATTG
AAAACTAGCCAATAAGATATGATGCAAAC
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protein sequence of NO16G01190.1

>NO16G01190.1-protein ID=NO16G01190.1-protein|Name=NO16G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=716bp
MGRRPAGQGPRRPGGASGVKSPRQGGLASGLVAYHSESEEEEEEPQGEEQ
GGNGSRMGSATTVSAAAAAAAATAEGQGPPENEEDTLRAAAEAEDLFKSL
EEEMRQDATTTPAAAAAQPSPRRKLVHKPLATFTEAELKRLSGRDTSLQS
LLMECLVEINSMVLPDKVRKEGEDEEEDKEEGGKKEDEETILAREEMWEV
EFIKLSARMDDWRAELLPSSSLVRRMKELGQRLAQQLLEEEEKKEKAKAA
RQRQKDGENARSTYISAVEKDSVAAAAAAAAEGEGGIGVWTSVFDQTYQS
YYWHNGLTGETSWENPHENQQKPQQRQQQQYQHQQHSQGEEAATATSPAT
STSSSTFLMANRATAAAAAGTGTVIPSPFSSFLPIGTAPGTINEQNSLLL
YTGAQPLVHTAHDASALFDGSRTGVRAVRELGDGYFVLSFSNAAMAVKAL
KKQSANVVVVAAASSAAAAAGEWNGNGRASKKVEEEEEEVVVQQARRSWI
EGMRATFLRFVMPEDEPGKLSAVPVAVMEGEEIEEKKEEEEEQLEEQGDG
LLVSVGERDGRNGSEEAAAAAAAAAETAAAIDEILAEVNKPTYSSSSSSS
SSSSSSSSSSSSSSSLRPFPPALATSSTRSKHPKIVSLPRKRKGGDQSES
DEQDMGEEEDGERKEYMMAGLKTEAAATARAAAAKAARAAAAAAVADAVD
SVALKKKGNNKKTKH*
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Synonyms
Publications