NO16G01190.1, NO16G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01190.1
Unique NameNO16G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2217
Alignment locationchr16:371235..373563 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:371235..373563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G01190.1 vs.
Match: EWM23996.1 (WW/Rsp5/WWP [Nannochloropsis gaditana])

HSP 1 Score: 239.6 bits (610), Expect = 3.000e-59
Identity = 217/582 (37.29%), Postives = 298/582 (51.20%), Query Frame = 0 
Query:    1 MGRRPAGQGPRRPGGASGVKSPRQGGLASGLVAYHSESEEEEEEPQGEEQGGNGSRMGSATTVSAAAAAAAATAEGQGPPENEEDTLRAAAEAEDLFKSLEEEMRQDAT----TTPAAAAAQPSPRR-------------KLVHKPLATFTEAELKRLSGRDTSLQSLLMECLVEINSMVLPDKVRKEGEDEEEDKEEGGKKEDEETILAREEMWEVEFIKLSARMDDWRAELLPSSSLVRRMKELGQRLAQQLLEEEEKKEKAKAA---RQRQKDGENARSTYISAVEKDSVAAAAAAAAEGEGGIGVWTSVFDQTYQSYYWHNGLTGETSWENPHENQQKPQQRQQQQYQHQQHSQGEEAATATSPATSTSSSTFLMANRATAAAAAGTGTVIPS-----PFSSFLPIGTAPGTINEQNSLLLYTGAQPLVHTAHDASALFDGSRTGVRAVRELGDGYFVLSFSNAAMAVKALKKQSANVVVVAAASSAAAAAGEWNGNGRASKKVEEEEEEVVVQQARRSWIEGMRATFLRFVMPEDEPGKLSAVPVAVMEGE-EIEEKKEEEEEQLEEQGDGLLVSVG 557
            MG+R  GQGPRRP   SGV        ASGLVAY S+SE ++E+    E  G+ +R                        E   D L+AAA+ EDLFKSLEEE  Q A+       AAA A    R+             K+ H PL  F+EAEL+R+SG+D+SL+ L++ECL ++N+M+       + +  E DK  G    D ++     E WEVEFIKLSAR++DWRA LLPSSSLVRR++ELG  +A Q+L EE      K A   ++++ +   A  T ++ V   S     AA         VW++ +D TYQSYYWHN +TGET WE P                      G E A A       SS +F         AA  T T  P      PF++ LP+ T       QNSLLLY G  PL+ T  +AS+LF G+  G+R VR LG GYFV+SF + A  V+AL  Q+     V     +A         G   ++ E+E  + VV++A R WI G ++TF+R V   DEPGK+ A+PV  + G+ E  + ++E+    E +G+ +++  G
Sbjct:    1 MGKRQRGQGPRRP--ESGVVKQEYVN-ASGLVAYQSDSEADDEDVAPAEAVGSIARHVVPRGHLIKNGPEVQNTGQAAKDEEYADPLKAAADVEDLFKSLEEEFLQGASPQREVVKAAATASIGARQTDKKYLPAHALRQKIAHTPLVMFSEAELRRISGKDSSLRDLVVECLGKMNAMLAKYLNATKSDRSEADKLSG----DGKSGFVGVENWEVEFIKLSARVEDWRAGLLPSSSLVRRVRELGATVAAQVLAEETLCHGLKEAVKKKEKEAEASGASMTEVAGVTHTSTIGPVAAPT-----TPVWSTAYDPTYQSYYWHNAVTGETRWERP-------------------SGAGTEMAGA-------SSESF---------AAPSTSTTTPEAAPVLPFANALPVQT-------QNSLLLYVGDPPLLQTGSEASSLFRGA--GLRHVRALGQGYFVVSFPSKAAVVEALMHQATTAGTVTMDVQSAQ-------RGEKRRREEQEASKDVVERAGREWIPGDKSTFVRLVTEADEPGKIGAMPVVAVGGKGEAGDGRDEDGPGGEREGNAVIMGQG 519
The following BLAST results are available for this feature:
BLAST of NO16G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23996.13.000e-5937.29WW/Rsp5/WWP [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01190NO16G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01190.1NO16G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01190.1.cds1NO16G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01190.1.cds2NO16G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01190.1 ID=NO16G01190.1|Name=NO16G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp
ACAGAGATGGGCAGGAGGCCAGCGGGACAAGGGCCTCGGAGACCTGGTGG
TGCAAGCGGGGTGAAGTCACCGCGGCAGGGTGGGCTTGCGTCTGGACTTG
TGGCGTACCACTCTGAATCGGAGGAGGAGGAGGAGGAGCCTCAGGGAGAA
GAGCAGGGAGGAAATGGCAGTCGCATGGGCAGCGCGACCACAGTCTCAGC
AGCAGCAGCAGCTGCCGCAGCTACAGCGGAGGGGCAAGGGCCACCAGAGA
ACGAGGAGGATACCTTGAGGGCCGCGGCCGAAGCAGAAGACTTATTCAAG
AGCCTGGAGGAAGAAATGCGGCAGGATGCGACTACAACGCCAGCTGCGGC
AGCAGCACAGCCATCACCACGACGAAAGCTGGTGCATAAGCCCTTGGCTA
CCTTCACGGAAGCGGAACTCAAACGTCTCAGCGGTAGGGATACGTCGCTG
CAATCGTTGCTGATGGAATGCTTGGTGGAAATTAATTCAATGGTGTTGCC
TGACAAGGTAAGAAAGGAGGGCGAGGACGAGGAAGAGGACAAGGAGGAAG
GGGGTAAGAAGGAGGATGAAGAGACAATCCTGGCTCGGGAAGAAATGTGG
GAGGTGGAATTCATTAAGCTTTCGGCGCGGATGGATGATTGGAGGGCAGA
GTTGCTCCCGTCTTCTTCTCTGGTGCGACGAATGAAGGAGCTAGGACAAC
GCCTCGCGCAGCAATTGTTGGAGGAGGAGGAGAAGAAAGAGAAGGCCAAG
GCGGCTAGACAAAGACAGAAAGACGGTGAGAATGCACGCTCGACATATAT
ATCAGCGGTAGAAAAGGATTCAGTGGCAGCAGCAGCAGCAGCAGCAGCAG
AGGGGGAGGGAGGTATTGGCGTGTGGACAAGTGTGTTTGACCAGACCTAC
CAGAGCTACTACTGGCACAACGGACTGACCGGGGAGACATCCTGGGAGAA
TCCTCATGAAAACCAGCAGAAGCCACAGCAGCGACAGCAGCAGCAATACC
AACATCAACAACATTCGCAAGGAGAGGAGGCTGCGACCGCTACCTCACCT
GCCACTTCCACCTCCTCCTCTACGTTCCTCATGGCGAACCGCGCGACTGC
AGCTGCAGCCGCAGGCACAGGCACGGTCATCCCTTCCCCCTTCTCTTCCT
TTCTTCCTATAGGCACCGCTCCTGGTACTATAAACGAGCAGAACTCTCTT
TTACTGTACACAGGGGCACAACCCCTTGTCCATACAGCCCACGACGCAAG
TGCCTTATTTGACGGGTCGAGGACGGGAGTGAGGGCTGTCCGCGAGCTAG
GAGATGGTTATTTTGTCTTGTCTTTTTCAAACGCTGCAATGGCTGTGAAG
GCGCTGAAAAAACAATCAGCGAATGTTGTTGTTGTTGCTGCTGCTTCCTC
TGCTGCTGCTGCTGCTGGAGAATGGAATGGGAACGGCCGTGCTTCAAAGA
AGGTGGAAGAGGAGGAGGAGGAGGTTGTGGTGCAGCAGGCGAGACGGTCG
TGGATTGAAGGGATGAGGGCGACCTTTTTAAGATTTGTGATGCCTGAGGA
TGAGCCAGGGAAACTTAGCGCAGTTCCTGTGGCGGTGATGGAGGGAGAGG
AGATTGAGGAGAAAAAGGAGGAAGAAGAAGAGCAGCTGGAAGAGCAGGGA
GATGGCTTGCTAGTATCAGTGGGTGAGAGGGATGGCAGAAATGGCTCTGA
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTGAAACGGCAGCAGCAATTG
ATGAGATACTTGCAGAAGTCAATAAGCCCACCTATTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CCTCAGGCCTTTTCCTCCTGCTCTAGCGACGAGTAGCACCCGGTCTAAGC
ATCCGAAAATTGTTTCATTGCCTCGAAAACGGAAGGGGGGGGACCAGAGT
GAGAGTGACGAGCAAGACATGGGAGAAGAAGAGGATGGAGAGAGGAAGGA
ATATATGATGGCTGGTCTCAAGACGGAAGCGGCCGCGACTGCTAGAGCGG
CCGCAGCCAAAGCGGCAAGGGCAGCAGCTGCTGCAGCTGTGGCAGATGCA
GTGGACTCTGTTGCGTTGAAGAAGAAGGGCAATAATAAAAAGACAAAGCA
CTAGAATAGAATGCAGACACCATGTACAAAATAAATTGAAAACTAGCCAA
TAAGATATGATGCAAAC
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protein sequence of NO16G01190.1

>NO16G01190.1-protein ID=NO16G01190.1-protein|Name=NO16G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=716bp
MGRRPAGQGPRRPGGASGVKSPRQGGLASGLVAYHSESEEEEEEPQGEEQ
GGNGSRMGSATTVSAAAAAAAATAEGQGPPENEEDTLRAAAEAEDLFKSL
EEEMRQDATTTPAAAAAQPSPRRKLVHKPLATFTEAELKRLSGRDTSLQS
LLMECLVEINSMVLPDKVRKEGEDEEEDKEEGGKKEDEETILAREEMWEV
EFIKLSARMDDWRAELLPSSSLVRRMKELGQRLAQQLLEEEEKKEKAKAA
RQRQKDGENARSTYISAVEKDSVAAAAAAAAEGEGGIGVWTSVFDQTYQS
YYWHNGLTGETSWENPHENQQKPQQRQQQQYQHQQHSQGEEAATATSPAT
STSSSTFLMANRATAAAAAGTGTVIPSPFSSFLPIGTAPGTINEQNSLLL
YTGAQPLVHTAHDASALFDGSRTGVRAVRELGDGYFVLSFSNAAMAVKAL
KKQSANVVVVAAASSAAAAAGEWNGNGRASKKVEEEEEEVVVQQARRSWI
EGMRATFLRFVMPEDEPGKLSAVPVAVMEGEEIEEKKEEEEEQLEEQGDG
LLVSVGERDGRNGSEEAAAAAAAAAETAAAIDEILAEVNKPTYSSSSSSS
SSSSSSSSSSSSSSSLRPFPPALATSSTRSKHPKIVSLPRKRKGGDQSES
DEQDMGEEEDGERKEYMMAGLKTEAAATARAAAAKAARAAAAAAVADAVD
SVALKKKGNNKKTKH*
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mRNA from alignment at chr16:371235..373563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01190.1 ID=NO16G01190.1|Name=NO16G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp|location=Sequence derived from alignment at chr16:371235..373563+ (Nannochloropsis oceanica)
ACAGAGATGGGCAGGAGGCCAGCGGGACAAGGGCCTCGGAGACCTGGTGG
TGCAAGCGGGGTGAAGTCACCGCGGCAGGGTGGGCTTGCGTCTGGGTAAG
CTATAGCTGGGAAGGAAATGGAAGGAAGGAACACACACGAGTGAGAGTGC
GATCAGCTCTGGAGCGTGTTAACCTTTTGCGTCCCGTCATCCTTCTTTCA
CACATAGACTTGTGGCGTACCACTCTGAATCGGAGGAGGAGGAGGAGGAG
CCTCAGGGAGAAGAGCAGGGAGGAAATGGCAGTCGCATGGGCAGCGCGAC
CACAGTCTCAGCAGCAGCAGCAGCTGCCGCAGCTACAGCGGAGGGGCAAG
GGCCACCAGAGAACGAGGAGGATACCTTGAGGGCCGCGGCCGAAGCAGAA
GACTTATTCAAGAGCCTGGAGGAAGAAATGCGGCAGGATGCGACTACAAC
GCCAGCTGCGGCAGCAGCACAGCCATCACCACGACGAAAGCTGGTGCATA
AGCCCTTGGCTACCTTCACGGAAGCGGAACTCAAACGTCTCAGCGGTAGG
GATACGTCGCTGCAATCGTTGCTGATGGAATGCTTGGTGGAAATTAATTC
AATGGTGTTGCCTGACAAGGTAAGAAAGGAGGGCGAGGACGAGGAAGAGG
ACAAGGAGGAAGGGGGTAAGAAGGAGGATGAAGAGACAATCCTGGCTCGG
GAAGAAATGTGGGAGGTGGAATTCATTAAGCTTTCGGCGCGGATGGATGA
TTGGAGGGCAGAGTTGCTCCCGTCTTCTTCTCTGGTGCGACGAATGAAGG
AGCTAGGACAACGCCTCGCGCAGCAATTGTTGGAGGAGGAGGAGAAGAAA
GAGAAGGCCAAGGCGGCTAGACAAAGACAGAAAGACGGTGAGAATGCACG
CTCGACATATATATCAGCGGTAGAAAAGGATTCAGTGGCAGCAGCAGCAG
CAGCAGCAGCAGAGGGGGAGGGAGGTATTGGCGTGTGGACAAGTGTGTTT
GACCAGACCTACCAGAGCTACTACTGGCACAACGGACTGACCGGGGAGAC
ATCCTGGGAGAATCCTCATGAAAACCAGCAGAAGCCACAGCAGCGACAGC
AGCAGCAATACCAACATCAACAACATTCGCAAGGAGAGGAGGCTGCGACC
GCTACCTCACCTGCCACTTCCACCTCCTCCTCTACGTTCCTCATGGCGAA
CCGCGCGACTGCAGCTGCAGCCGCAGGCACAGGCACGGTCATCCCTTCCC
CCTTCTCTTCCTTTCTTCCTATAGGCACCGCTCCTGGTACTATAAACGAG
CAGAACTCTCTTTTACTGTACACAGGGGCACAACCCCTTGTCCATACAGC
CCACGACGCAAGTGCCTTATTTGACGGGTCGAGGACGGGAGTGAGGGCTG
TCCGCGAGCTAGGAGATGGTTATTTTGTCTTGTCTTTTTCAAACGCTGCA
ATGGCTGTGAAGGCGCTGAAAAAACAATCAGCGAATGTTGTTGTTGTTGC
TGCTGCTTCCTCTGCTGCTGCTGCTGCTGGAGAATGGAATGGGAACGGCC
GTGCTTCAAAGAAGGTGGAAGAGGAGGAGGAGGAGGTTGTGGTGCAGCAG
GCGAGACGGTCGTGGATTGAAGGGATGAGGGCGACCTTTTTAAGATTTGT
GATGCCTGAGGATGAGCCAGGGAAACTTAGCGCAGTTCCTGTGGCGGTGA
TGGAGGGAGAGGAGATTGAGGAGAAAAAGGAGGAAGAAGAAGAGCAGCTG
GAAGAGCAGGGAGATGGCTTGCTAGTATCAGTGGGTGAGAGGGATGGCAG
AAATGGCTCTGAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTGAAACGG
CAGCAGCAATTGATGAGATACTTGCAGAAGTCAATAAGCCCACCTATTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCTCAGGCCTTTTCCTCCTGCTCTAGCGACGAGTAGCA
CCCGGTCTAAGCATCCGAAAATTGTTTCATTGCCTCGAAAACGGAAGGGG
GGGGACCAGAGTGAGAGTGACGAGCAAGACATGGGAGAAGAAGAGGATGG
AGAGAGGAAGGAATATATGATGGCTGGTCTCAAGACGGAAGCGGCCGCGA
CTGCTAGAGCGGCCGCAGCCAAAGCGGCAAGGGCAGCAGCTGCTGCAGCT
GTGGCAGATGCAGTGGACTCTGTTGCGTTGAAGAAGAAGGGCAATAATAA
AAAGACAAAGCACTAGAATAGAATGCAGACACCATGTACAAAATAAATTG
AAAACTAGCCAATAAGATATGATGCAAAC
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Coding sequence (CDS) from alignment at chr16:371235..373563+

>NO16G01190.1 ID=NO16G01190.1|Name=NO16G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at chr16:371235..373563+ (Nannochloropsis oceanica)
ATGGGCAGGAGGCCAGCGGGACAAGGGCCTCGGAGACCTGGTGGTGCAAG
CGGGGTGAAGTCACCGCGGCAGGGTGGGCTTGCGTCTGGACTTGTGGCGT
ACCACTCTGAATCGGAGGAGGAGGAGGAGGAGCCTCAGGGAGAAGAGCAG
GGAGGAAATGGCAGTCGCATGGGCAGCGCGACCACAGTCTCAGCAGCAGC
AGCAGCTGCCGCAGCTACAGCGGAGGGGCAAGGGCCACCAGAGAACGAGG
AGGATACCTTGAGGGCCGCGGCCGAAGCAGAAGACTTATTCAAGAGCCTG
GAGGAAGAAATGCGGCAGGATGCGACTACAACGCCAGCTGCGGCAGCAGC
ACAGCCATCACCACGACGAAAGCTGGTGCATAAGCCCTTGGCTACCTTCA
CGGAAGCGGAACTCAAACGTCTCAGCGGTAGGGATACGTCGCTGCAATCG
TTGCTGATGGAATGCTTGGTGGAAATTAATTCAATGGTGTTGCCTGACAA
GGTAAGAAAGGAGGGCGAGGACGAGGAAGAGGACAAGGAGGAAGGGGGTA
AGAAGGAGGATGAAGAGACAATCCTGGCTCGGGAAGAAATGTGGGAGGTG
GAATTCATTAAGCTTTCGGCGCGGATGGATGATTGGAGGGCAGAGTTGCT
CCCGTCTTCTTCTCTGGTGCGACGAATGAAGGAGCTAGGACAACGCCTCG
CGCAGCAATTGTTGGAGGAGGAGGAGAAGAAAGAGAAGGCCAAGGCGGCT
AGACAAAGACAGAAAGACGGTGAGAATGCACGCTCGACATATATATCAGC
GGTAGAAAAGGATTCAGTGGCAGCAGCAGCAGCAGCAGCAGCAGAGGGGG
AGGGAGGTATTGGCGTGTGGACAAGTGTGTTTGACCAGACCTACCAGAGC
TACTACTGGCACAACGGACTGACCGGGGAGACATCCTGGGAGAATCCTCA
TGAAAACCAGCAGAAGCCACAGCAGCGACAGCAGCAGCAATACCAACATC
AACAACATTCGCAAGGAGAGGAGGCTGCGACCGCTACCTCACCTGCCACT
TCCACCTCCTCCTCTACGTTCCTCATGGCGAACCGCGCGACTGCAGCTGC
AGCCGCAGGCACAGGCACGGTCATCCCTTCCCCCTTCTCTTCCTTTCTTC
CTATAGGCACCGCTCCTGGTACTATAAACGAGCAGAACTCTCTTTTACTG
TACACAGGGGCACAACCCCTTGTCCATACAGCCCACGACGCAAGTGCCTT
ATTTGACGGGTCGAGGACGGGAGTGAGGGCTGTCCGCGAGCTAGGAGATG
GTTATTTTGTCTTGTCTTTTTCAAACGCTGCAATGGCTGTGAAGGCGCTG
AAAAAACAATCAGCGAATGTTGTTGTTGTTGCTGCTGCTTCCTCTGCTGC
TGCTGCTGCTGGAGAATGGAATGGGAACGGCCGTGCTTCAAAGAAGGTGG
AAGAGGAGGAGGAGGAGGTTGTGGTGCAGCAGGCGAGACGGTCGTGGATT
GAAGGGATGAGGGCGACCTTTTTAAGATTTGTGATGCCTGAGGATGAGCC
AGGGAAACTTAGCGCAGTTCCTGTGGCGGTGATGGAGGGAGAGGAGATTG
AGGAGAAAAAGGAGGAAGAAGAAGAGCAGCTGGAAGAGCAGGGAGATGGC
TTGCTAGTATCAGTGGGTGAGAGGGATGGCAGAAATGGCTCTGAAGAAGC
AGCAGCAGCAGCAGCAGCAGCAGCTGAAACGGCAGCAGCAATTGATGAGA
TACTTGCAGAAGTCAATAAGCCCACCTATTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCAG
GCCTTTTCCTCCTGCTCTAGCGACGAGTAGCACCCGGTCTAAGCATCCGA
AAATTGTTTCATTGCCTCGAAAACGGAAGGGGGGGGACCAGAGTGAGAGT
GACGAGCAAGACATGGGAGAAGAAGAGGATGGAGAGAGGAAGGAATATAT
GATGGCTGGTCTCAAGACGGAAGCGGCCGCGACTGCTAGAGCGGCCGCAG
CCAAAGCGGCAAGGGCAGCAGCTGCTGCAGCTGTGGCAGATGCAGTGGAC
TCTGTTGCGTTGAAGAAGAAGGGCAATAATAAAAAGACAAAGCACTAG
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Synonyms
Publications