NO16G01130, NO16G01130 (gene) Nannochloropsis oceanica

Overview
NameNO16G01130
Unique NameNO16G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr16:354202..355601 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:354202..355601 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008121ubiquinol-cytochrome-c reductase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036642Cyt_bc1_su8_sf
IPR004205Cyt_bc1_su8
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
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BLAST of NO16G01130 vs. NCBI_GenBank
Match: EWM24028.1 (hypothetical protein Naga_100040g29 [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 2.600e-49
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0 
Query:    1 MAFVRTAARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 101
            MAF RT ARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITK+LSPFEQRII+PM DDAP K+LKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
Sbjct:    1 MAFARTVARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 100
[Close]
BLAST of NO16G01130 vs. NCBI_GenBank
Match: OQR93800.1 (hypothetical protein ACHHYP_02267 [Achlya hypogyna])

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-8
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:   23 SMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 100
            ++  WWK  Y  + G + +TLSP+EQR +  ++  AP K L+ ++  +  ++P+F++ + TV WA  E D+ HR HW
Sbjct:    7 ALATWWK-KYAPETGRVVRTLSPYEQRPVDYLIKSAPQKALRKVQENALVLVPSFILLWGTVAWAKAENDRYHRTHW 82
[Close]
BLAST of NO16G01130 vs. NCBI_GenBank
Match: XP_008608486.1 (UcrQ family protein [Saprolegnia diclina VS20] >EQC38159.1 UcrQ family protein [Saprolegnia diclina VS20])

HSP 1 Score: 66.6 bits (161), Expect = 5.000e-8
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:   23 SMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 100
            ++  WWK  Y  + G + +TLSP+EQR +  ++  AP K L+ ++  +  ++P+F + + TV WA  E D+ HR HW
Sbjct:    7 ALTTWWK-KYAPETGRVVRTLSPYEQRPVDYLIKSAPQKALRKVQENALVLVPSFFLLWGTVAWAKGENDRYHRTHW 82
[Close]
BLAST of NO16G01130 vs. NCBI_GenBank
Match: OQR93612.1 (hypothetical protein THRCLA_22296 [Thraustotheca clavata])

HSP 1 Score: 66.2 bits (160), Expect = 6.500e-8
Identity = 27/77 (35.06%), Postives = 49/77 (63.64%), Query Frame = 0 
Query:   23 SMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 100
            ++  WWK  Y  ++G + +TLSP+EQR +  ++  AP K L+ ++  +  ++P+F++ + TV W+  E D+ HR HW
Sbjct:    7 ALATWWK-KYAPESGRVVRTLSPYEQRPVDYLIKSAPQKALRKVQENALMLVPSFLLLWGTVAWSKAENDRYHRSHW 82
[Close]
BLAST of NO16G01130 vs. NCBI_GenBank
Match: XP_009830543.1 (hypothetical protein H257_06866 [Aphanomyces astaci] >ETV79607.1 hypothetical protein H257_06866 [Aphanomyces astaci])

HSP 1 Score: 63.5 bits (153), Expect = 4.200e-7
Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 0 
Query:   23 SMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHW 100
            +++ WW   Y+ ++G + + LSPFEQR +  ++  AP K L+ ++     ++P+F++ + TV WA  E D+ HREHW
Sbjct:   11 ALKTWWS-KYSYESGRVVRQLSPFEQRPVDYLIRTAPEKALRKVQENFFPLVPSFLLLWGTVAWAVDENDRHHREHW 86
[Close]
BLAST of NO16G01130 vs. NCBI_GenBank
Match: XP_008875453.1 (hypothetical protein H310_10775 [Aphanomyces invadans] >ETV96142.1 hypothetical protein H310_10775 [Aphanomyces invadans])

HSP 1 Score: 63.5 bits (153), Expect = 4.200e-7
Identity = 27/78 (34.62%), Postives = 50/78 (64.10%), Query Frame = 0 
Query:   23 SMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 101
            +++ WW   Y+ ++G + + LSP+EQR +  ++  AP K L+ ++     ++P+F++ + TV WA  E D+ HR+HWD
Sbjct:   11 ALKTWWS-KYSYESGRVVRQLSPYEQRPVDYLIRTAPQKALRKVQENFFPLVPSFLLLWGTVAWAVDENDRHHRQHWD 87
The following BLAST results are available for this feature:
BLAST of NO16G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM24028.12.600e-4993.00hypothetical protein Naga_100040g29 [Nannochlorops... [more]
OQR93800.12.200e-836.36hypothetical protein ACHHYP_02267 [Achlya hypogyna... [more]
XP_008608486.15.000e-836.36UcrQ family protein [Saprolegnia diclina VS20] >EQ... [more]
OQR93612.16.500e-835.06hypothetical protein THRCLA_22296 [Thraustotheca c... [more]
XP_009830543.14.200e-736.36hypothetical protein H257_06866 [Aphanomyces astac... [more]
XP_008875453.14.200e-734.62hypothetical protein H310_10775 [Aphanomyces invad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003098NSK003098Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01130.1NO16G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593414gene_5990Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g29gene6456Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01130.1NO16G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01130 ID=NO16G01130|Name=NO16G01130|organism=Nannochloropsis oceanica|type=gene|length=1400bp
TACAACAGGCGAGCAAGAAACATCTCACACACACCACATCTTACCTTGTT
CCTACGAGGGCCGGCGGGCACCGCTGGCACTCTCTGCCCCCACGCCTTCT
CAACCCCTCCACAACGACCACTACGATCGTCTCTATGTGCTGAATCGCTC
GTGAGGACTGGCGGGTTGTTGCCTGGCCTTTTCCATGCACTCACACCATA
CCCTCAGCGTCATGATCGAAATCAAGCAACCCCAGCCAAAAACAAACAAG
CCCCAGCGAGACCACACCCAACACCCACTCTCTCCCCACAACTCCCCACG
CACCACAGCATCGTCATGGCCTTTGTGCGCACGGCAGCCCGCCAGATGGG
GCATGGCCTGGAGCGCGTGGACGTGAGTCTCTCCATGCGAAAGTGGTGGA
AGCTTGGCTACACCCGTCAGAACGGCCTGgtacgtaaaaatttatctaag
atgcggagacatgtgggatggggaagcgaaaggaatggagggaagattgt
ggcatcgtctctactgtccctgttccgaattgctattcggggtgggggcg
ggcaggtgggcaagtgtggtggcataggtgatgtttttgctatttggaac
gttgctttccagtatgagcacgctgatccctgattacaccgcttgaacgg
ctgtcttaattccacccttgagctgtcatctatttagcatgtcgcgattt
tatcaatcattcttcatcctctcctctttcctctcatctccacctctgaa
aaaccagATCACCAAGACGCTGTCGCCCTTCGAACAGCGCATTATCACGC
CCATGCTGGACGATGCCCCTACCAAGgtgagtcttatcaaatcaacctcc
tcgttgtactcttcctcccttcactatttcatgcgtacgaaaagaggccc
gcgtccgctcgtcttgcgctcattcccttgccctctctccctcgcttttt
ctgcttccctcgcagATCCTTAAGTACCTAAAGCGTTGGTCCACTACCAT
CTTGCCGGCCTTTGTTATCACTTACTCTACTGTCAAGTGGGCCGACTGGG
AGTTCGACCAAATCCATCGCGAGCACTGGGATTAAGCAAGGAAACAAACG
AATGAGGGAGGAAGAAGAGAATGGATTGGATAGGGTCTTGTTCGATTAGA
GAGGGGACGACGGAGAGAGCTCGATTGAGTGAGTATGCATGAACGTCCTT
CACTATTGTTGGTTGTGGTGCAATAGAGAGACGGGAATCACGCCCTCGTT
TCTGGGAGGGCTGGCTACGAATAGACGGGAAACCGTTCGTGGACGAAGCT
CACGCACAAGAAAGAAAATGAAAGAGCTCTTCTTTTTAGAGGCAAATCAG
TGCCATTGTAACTCCTTCTATTGGATGTTGAATGGTGATGCTGATATTTT
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protein sequence of NO16G01130.1

>NO16G01130.1-protein ID=NO16G01130.1-protein|Name=NO16G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAFVRTAARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKTLSPFEQRI
ITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
*
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Synonyms
Publications