NO16G01130.1, NO16G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01130.1
Unique NameNO16G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr16:354202..355601 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:354202..355601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01130.1 vs.
Match: EWM24028.1 (hypothetical protein Naga_100040g29 [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 2.600e-49
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0 
Query:    1 MAFVRTAARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKTLSPFEQRIITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 101
            MAF RT ARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITK+LSPFEQRII+PM DDAP K+LKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
Sbjct:    1 MAFARTVARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKSLSPFEQRIISPMFDDAPNKVLKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD 100
The following BLAST results are available for this feature:
BLAST of NO16G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24028.12.600e-4993.00hypothetical protein Naga_100040g29 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01130NO16G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01130.1NO16G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01130.1.cds1NO16G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01130.1.cds2NO16G01130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01130.1.cds3NO16G01130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01130.1 ID=NO16G01130.1|Name=NO16G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
TACAACAGGCGAGCAAGAAACATCTCACACACACCACATCTTACCTTGTT
CCTACGAGGGCCGGCGGGCACCGCTGGCACTCTCTGCCCCCACGCCTTCT
CAACCCCTCCACAACGACCACTACGATCGTCTCTATGTGCTGAATCGCTC
GTGAGGACTGGCGGGTTGTTGCCTGGCCTTTTCCATGCACTCACACCATA
CCCTCAGCGTCATGATCGAAATCAAGCAACCCCAGCCAAAAACAAACAAG
CCCCAGCGAGACCACACCCAACACCCACTCTCTCCCCACAACTCCCCACG
CACCACAGCATCGTCATGGCCTTTGTGCGCACGGCAGCCCGCCAGATGGG
GCATGGCCTGGAGCGCGTGGACGTGAGTCTCTCCATGCGAAAGTGGTGGA
AGCTTGGCTACACCCGTCAGAACGGCCTGATCACCAAGACGCTGTCGCCC
TTCGAACAGCGCATTATCACGCCCATGCTGGACGATGCCCCTACCAAGAT
CCTTAAGTACCTAAAGCGTTGGTCCACTACCATCTTGCCGGCCTTTGTTA
TCACTTACTCTACTGTCAAGTGGGCCGACTGGGAGTTCGACCAAATCCAT
CGCGAGCACTGGGATTAAGCAAGGAAACAAACGAATGAGGGAGGAAGAAG
AGAATGGATTGGATAGGGTCTTGTTCGATTAGAGAGGGGACGACGGAGAG
AGCTCGATTGAGTGAGTATGCATGAACGTCCTTCACTATTGTTGGTTGTG
GTGCAATAGAGAGACGGGAATCACGCCCTCGTTTCTGGGAGGGCTGGCTA
CGAATAGACGGGAAACCGTTCGTGGACGAAGCTCACGCACAAGAAAGAAA
ATGAAAGAGCTCTTCTTTTTAGAGGCAAATCAGTGCCATTGTAACTCCTT
CTATTGGATGTTGAATGGTGATGCTGATATTTT
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protein sequence of NO16G01130.1

>NO16G01130.1-protein ID=NO16G01130.1-protein|Name=NO16G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAFVRTAARQMGHGLERVDVSLSMRKWWKLGYTRQNGLITKTLSPFEQRI
ITPMLDDAPTKILKYLKRWSTTILPAFVITYSTVKWADWEFDQIHREHWD
*
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mRNA from alignment at chr16:354202..355601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01130.1 ID=NO16G01130.1|Name=NO16G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp|location=Sequence derived from alignment at chr16:354202..355601- (Nannochloropsis oceanica)
TACAACAGGCGAGCAAGAAACATCTCACACACACCACATCTTACCTTGTT
CCTACGAGGGCCGGCGGGCACCGCTGGCACTCTCTGCCCCCACGCCTTCT
CAACCCCTCCACAACGACCACTACGATCGTCTCTATGTGCTGAATCGCTC
GTGAGGACTGGCGGGTTGTTGCCTGGCCTTTTCCATGCACTCACACCATA
CCCTCAGCGTCATGATCGAAATCAAGCAACCCCAGCCAAAAACAAACAAG
CCCCAGCGAGACCACACCCAACACCCACTCTCTCCCCACAACTCCCCACG
CACCACAGCATCGTCATGGCCTTTGTGCGCACGGCAGCCCGCCAGATGGG
GCATGGCCTGGAGCGCGTGGACGTGAGTCTCTCCATGCGAAAGTGGTGGA
AGCTTGGCTACACCCGTCAGAACGGCCTGGTACGTAAAAATTTATCTAAG
ATGCGGAGACATGTGGGATGGGGAAGCGAAAGGAATGGAGGGAAGATTGT
GGCATCGTCTCTACTGTCCCTGTTCCGAATTGCTATTCGGGGTGGGGGCG
GGCAGGTGGGCAAGTGTGGTGGCATAGGTGATGTTTTTGCTATTTGGAAC
GTTGCTTTCCAGTATGAGCACGCTGATCCCTGATTACACCGCTTGAACGG
CTGTCTTAATTCCACCCTTGAGCTGTCATCTATTTAGCATGTCGCGATTT
TATCAATCATTCTTCATCCTCTCCTCTTTCCTCTCATCTCCACCTCTGAA
AAACCAGATCACCAAGACGCTGTCGCCCTTCGAACAGCGCATTATCACGC
CCATGCTGGACGATGCCCCTACCAAGGTGAGTCTTATCAAATCAACCTCC
TCGTTGTACTCTTCCTCCCTTCACTATTTCATGCGTACGAAAAGAGGCCC
GCGTCCGCTCGTCTTGCGCTCATTCCCTTGCCCTCTCTCCCTCGCTTTTT
CTGCTTCCCTCGCAGATCCTTAAGTACCTAAAGCGTTGGTCCACTACCAT
CTTGCCGGCCTTTGTTATCACTTACTCTACTGTCAAGTGGGCCGACTGGG
AGTTCGACCAAATCCATCGCGAGCACTGGGATTAAGCAAGGAAACAAACG
AATGAGGGAGGAAGAAGAGAATGGATTGGATAGGGTCTTGTTCGATTAGA
GAGGGGACGACGGAGAGAGCTCGATTGAGTGAGTATGCATGAACGTCCTT
CACTATTGTTGGTTGTGGTGCAATAGAGAGACGGGAATCACGCCCTCGTT
TCTGGGAGGGCTGGCTACGAATAGACGGGAAACCGTTCGTGGACGAAGCT
CACGCACAAGAAAGAAAATGAAAGAGCTCTTCTTTTTAGAGGCAAATCAG
TGCCATTGTAACTCCTTCTATTGGATGTTGAATGGTGATGCTGATATTTT
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Coding sequence (CDS) from alignment at chr16:354202..355601-

>NO16G01130.1 ID=NO16G01130.1|Name=NO16G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at chr16:354202..355601- (Nannochloropsis oceanica)
ATGGCCTTTGTGCGCACGGCAGCCCGCCAGATGGGGCATGGCCTGGAGCG
CGTGGACGTGAGTCTCTCCATGCGAAAGTGGTGGAAGCTTGGCTACACCC
GTCAGAACGGCCTGATCACCAAGACGCTGTCGCCCTTCGAACAGCGCATT
ATCACGCCCATGCTGGACGATGCCCCTACCAAGATCCTTAAGTACCTAAA
GCGTTGGTCCACTACCATCTTGCCGGCCTTTGTTATCACTTACTCTACTG
TCAAGTGGGCCGACTGGGAGTTCGACCAAATCCATCGCGAGCACTGGGAT
TAA
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Synonyms
Publications