NO16G01100, NO16G01100 (gene) Nannochloropsis oceanica

Overview
NameNO16G01100
Unique NameNO16G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2108
Alignment locationchr16:346167..348274 +

Link to JBrowse

Properties
Property NameValue
DescriptionLate embryogenesis abundant protein (LEA) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:346167..348274 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO16G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003097NSK003097Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01100.1NO16G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G01100.2NO16G01100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G01100.3NO16G01100.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593398gene_5989Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g27gene6455Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01100.1NO16G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G01100.2NO16G01100.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G01100.3NO16G01100.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01100 ID=NO16G01100|Name=NO16G01100|organism=Nannochloropsis oceanica|type=gene|length=2108bp
ATTTAGGCATTTGAGAGTAAGCGAAATGAACCACTAAGACAATCTTGTCT
CAAGGTGCTGGCATGACTCAACCTCCTCTCTCTTCCGGCACGTCCCAACC
CACGTGTACCCCACGTGTACAGAACAACACTTTGTAACACAACGGACTGC
TCGAATGTCCCGCCTGTACGCGCGTTTCTCTCTGACTGTGATTCTTGTCT
CAGTCATTGTCGCCTTAACTATCATGGACCGCTTCCTCCTTGTGGCACGT
GCGGCCAAGGCCCTGCCTGTGGCGTGTGGTGGACGCCCTACTTCTGCGAC
GGCCCGTAACGCCATGGCTTCCTTTACCATTGCACGTAGCTCTTGTGCTG
GTAGAGTCGTCTCATCGCGCACCACACTTATGGCTCATCGTCCTTTCTTC
CTTTGCAGCCGTGGTGTTGGCGCGGGAGGTGGGCGTGAGGAGGAAACGCT
CGTCGTCCAGCCTTTCGCGGTCAACGCCCTCAACACTCCGGGGGTGCGAC
AAGGgtacgtttgtgtcagggatcgagatcccacaggtcgtgtgttctga
tgtgtcgatcgatattctgccacctacagGTGCACTGAAAACAGGAACAT
TCGCCTTTCGCGCTTTGTCCGGCACTTTGCCTCTTCCTCAACCCCCCCGC
CAAACCCGCCGCCAGGACGAGAAGGGGATTCCCACAAGCACAAGACAACT
GAGCTTTATGAAGACGCCAAGGACAAAGCCGAGCATTTATGGGAGGATAC
AAAAGAGGCAGCAAGCGAGGCGAAAGAGACACTGGCCGATGCTACATCCG
TTGCTAAAGAGAAACTCCAGAAAACGTCTGGCACGGTAGCGGAGAAAGTG
AAGGATATGACTCAGACTATGAAAGAGAAGGCGCAAGAGGCGAAAGGAAA
GGTCAAGGACACCAAGGAGgtgagcgacacggaagttgttatgcggaata
ttttgggtcatcggaccactattcattcccaatcgcatcttgtaactctt
cgctactttatcacggctttttatttcttatgcagAGCGCCAAGCACAAG
GCGGAGGAGGCATACGACACAGTGACAGAGAAGCTAGGAACTACGAAGCA
AAGCGCACGAGAGTACCAGAAAGGCTTAGAAGAGACAGCGAGCGAGACCA
TGGACGgtaagtgtacgacgaggaaatgaaattcttcagaagcggaaggt
cgggacttgtcgtgtcttggttcaaggtgtgtttattgatgagtagaagg
gggggggaggggggggggcaacgatttctctgatttggcttttgattact
tcccactgactcatctctcttaatttccaattacagCAGCGGGAGATAAC
GTGCACCTCAAGCAAAAGgtaattgcattgggagcaagttgtgcgtgccc
caagtttgtttttgatttggaatggaagacaccgtatttgtttgcaacct
cagtaccttattctgtccgtccttgtttttcgttgcacagGCATCTGAGG
CCAAGAGCAAGGCCGCACACACGCTCGATAACGCCCAAGACGCCGTTCAG
GAGGGGATGAAGGACGCAGAGGATTATTTGGAAGGAAAGAGCGAGCAGGC
CAGTGAGATGgtaagcccccggtggaggagagagggagggaaggggggta
ggagggtagtgggagggcgagagtatcctgtatatgcgtcgttttgtctg
aaaatttccgctttgatcaatcgaggggcttacaacatcgcgtgaagtaa
catcacgacaccgtcttctatcccaaaatctttcatggaatcccctgcct
cgtcgtgcagGGAGAGGATGTCAAGGATCGTGCCAGTCGGGCCAAGGAGG
AGCTTAAGACGTCCAAGGACAAGAAGTAGACGAAAGGGCTGAAATGAGAG
AGAGAAACGAGGGGAAATAGAAAGAGCAGACACGAAGGCGAAAAGCGAGG
TTGCAGGATAGTCGGTCGATTCATGATGCTGAGAAAAGGAAGAACATGTC
ATCAAACAAGCATTAAAAAAATATAGGGGGAGGCGTGCGAGGTAAAAAAG
AAGAAAAAAGGGAGAGGGATACATGAAGAAAACGTAATCAAACAAGCATG
AAAAAAAG
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protein sequence of NO16G01100.1

>NO16G01100.1-protein ID=NO16G01100.1-protein|Name=NO16G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MSRLYARFSLTVILVSVIVALTIMDRFLLVARAAKALPVACGGRPTSATA
RNAMASFTIARSSCAGRVVSSRTTLMAHRPFFLCSRGVGAGGGREEETLV
VQPFAVNALNTPGVRQGCTENRNIRLSRFVRHFASSSTPPPNPPPGREGD
SHKHKTTELYEDAKDKAEHLWEDTKEAASEAKETLADATSVAKEKLQKTS
GTVAEKVKDMTQTMKEKAQEAKGKVKDTKESAKHKAEEAYDTVTEKLGTT
KQSAREYQKGLEETASETMDAAGDNVHLKQKASEAKSKAAHTLDNAQDAV
QEGMKDAEDYLEGKSEQASEMGEDVKDRASRAKEELKTSKDKK*
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protein sequence of NO16G01100.2

>NO16G01100.2-protein ID=NO16G01100.2-protein|Name=NO16G01100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MSRLYARFSLTVILVSVIVALTIMDRFLLVARAAKALPVACGGRPTSATA
RNAMASFTIARSSCAGRVVSSRTTLMAHRPFFLCSRGVGAGGGREEETLV
VQPFAVNALNTPGVRQGCTENRNIRLSRFVRHFASSSTPPPNPPPGREGD
SHKHKTTELYEDAKDKAEHLWEDTKEAASEAKETLADATSVAKEKLQKTS
GTVAEKVKDMTQTMKEKAQEAKGKVKDTKEVSDTEVVMRNILGHRTTIHS
QSHLVTLRYFITAFYFLCRAPSTRRRRHTTQ*
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protein sequence of NO16G01100.3

>NO16G01100.3-protein ID=NO16G01100.3-protein|Name=NO16G01100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MSRLYARFSLTVILVSVIVALTIMDRFLLVARAAKALPVACGGRPTSATA
RNAMASFTIARSSCAGRVVSSRTTLMAHRPFFLCSRGVGAGGGREEETLV
VQPFAVNALNTPGVRQGCTENRNIRLSRFVRHFASSSTPPPNPPPGREGD
SHKHKTTELYEDAKDKAEHLWEDTKEAASEAKETLADATSVAKEKLQKTS
GTVAEKVKDMTQTMKEKAQEAKGKVKDTKESAKHKAEEAYDTVTEKLGTT
KQSAREYQKGLEETASETMDAAGDNVHLKQKVIALGASCACPKFVFDLEW
KTPYLFATSVPYSVRPCFSLHRHLRPRARPHTRSITPKTPFRRG*
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Synonyms
Publications