NO16G01100.3, NO16G01100.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01100.3
Unique NameNO16G01100.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1537
Alignment locationchr16:346167..348274 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:346167..348274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01100.3 vs.
Match: EWM24022.1 (hypothetical protein Naga_100040g27 [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.700e-15
Identity = 91/293 (31.06%), Postives = 143/293 (48.81%), Query Frame = 0 
Query:    1 MSRLYARFSLTVILVSVIVALTIMDRFLLVARAAKALPVACGGRPTSA--TARNAMASFTIARSSCAGRVVSSRTTLMAHRPFFLCSRGVGAGGGREEETLVVQPFAVNALNTPGVRQG----CTENRNIRLSR-FVRHFASSST--PPPNPP--PGREGDS-------------HKHKTTELYEDAKDKAEHLWEDTKEAASEAKETLADATSVAKEKLQKTSGTVAEKVKDMTQTMKEKAQEAKGKVKDTKESAKHKAEEAYDTVTEKLGTTKQSAREYQKGLEETASETM 270
            M R + R ++  I+    ++   M+R   +  A K    ACGG  + A     ++ ASF  +R S   ++       ++H+     +R    GG    +  +   F   ++ TP ++ G      E ++   +R  +RHFASSS+  PPP PP  PG + +              HK K  ELY++ KD+A   W+ TK  ASEAKE + DA   AK+K+++  G V++K  D+ +  KEK    K  ++DT E AK KA EAY+ V++       +A EY++  EE A   M
Sbjct:   24 MFRFHPRITVASIVAIAALSPKTMERSTFLVHAMKPGVNACGGAKSWACNVGTSSRASFAASRGSNFNQLPP--VAFLSHKSSLTSNREYSRGG----KDTITHAFNCKSVTTP-IKSGNLLWSIEQKHSYAARDLIRHFASSSSSNPPPTPPRYPGPDDEERKKVHEKVESAHEHKSKAGELYDEVKDEAGTAWQGTKNFASEAKEGIVDAAVAAKDKVKEKLGVVSDKAHDIKEAAKEKVTGTKEALEDTTEQAKEKASEAYEKVSD-------TAYEYKERAEEAAEHAM 302
The following BLAST results are available for this feature:
BLAST of NO16G01100.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24022.11.700e-1531.06hypothetical protein Naga_100040g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01100NO16G01100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01100.3NO16G01100.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01100.3.cds1NO16G01100.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01100.3.cds2NO16G01100.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01100.3.cds3NO16G01100.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01100.3.cds4NO16G01100.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01100.3 ID=NO16G01100.3|Name=NO16G01100.3|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp
ATTTAGGCATTTGAGAGTAAGCGAAATGAACCACTAAGACAATCTTGTCT
CAAGGTGCTGGCATGACTCAACCTCCTCTCTCTTCCGGCACGTCCCAACC
CACGTGTACCCCACGTGTACAGAACAACACTTTGTAACACAACGGACTGC
TCGAATGTCCCGCCTGTACGCGCGTTTCTCTCTGACTGTGATTCTTGTCT
CAGTCATTGTCGCCTTAACTATCATGGACCGCTTCCTCCTTGTGGCACGT
GCGGCCAAGGCCCTGCCTGTGGCGTGTGGTGGACGCCCTACTTCTGCGAC
GGCCCGTAACGCCATGGCTTCCTTTACCATTGCACGTAGCTCTTGTGCTG
GTAGAGTCGTCTCATCGCGCACCACACTTATGGCTCATCGTCCTTTCTTC
CTTTGCAGCCGTGGTGTTGGCGCGGGAGGTGGGCGTGAGGAGGAAACGCT
CGTCGTCCAGCCTTTCGCGGTCAACGCCCTCAACACTCCGGGGGTGCGAC
AAGGGTGCACTGAAAACAGGAACATTCGCCTTTCGCGCTTTGTCCGGCAC
TTTGCCTCTTCCTCAACCCCCCCGCCAAACCCGCCGCCAGGACGAGAAGG
GGATTCCCACAAGCACAAGACAACTGAGCTTTATGAAGACGCCAAGGACA
AAGCCGAGCATTTATGGGAGGATACAAAAGAGGCAGCAAGCGAGGCGAAA
GAGACACTGGCCGATGCTACATCCGTTGCTAAAGAGAAACTCCAGAAAAC
GTCTGGCACGGTAGCGGAGAAAGTGAAGGATATGACTCAGACTATGAAAG
AGAAGGCGCAAGAGGCGAAAGGAAAGGTCAAGGACACCAAGGAGAGCGCC
AAGCACAAGGCGGAGGAGGCATACGACACAGTGACAGAGAAGCTAGGAAC
TACGAAGCAAAGCGCACGAGAGTACCAGAAAGGCTTAGAAGAGACAGCGA
GCGAGACCATGGACGCAGCGGGAGATAACGTGCACCTCAAGCAAAAGGTA
ATTGCATTGGGAGCAAGTTGTGCGTGCCCCAAGTTTGTTTTTGATTTGGA
ATGGAAGACACCGTATTTGTTTGCAACCTCAGTACCTTATTCTGTCCGTC
CTTGTTTTTCGTTGCACAGGCATCTGAGGCCAAGAGCAAGGCCGCACACA
CGCTCGATAACGCCCAAGACGCCGTTCAGGAGGGGATGAAGGACGCAGAG
GATTATTTGGAAGGAAAGAGCGAGCAGGCCAGTGAGATGGGAGAGGATGT
CAAGGATCGTGCCAGTCGGGCCAAGGAGGAGCTTAAGACGTCCAAGGACA
AGAAGTAGACGAAAGGGCTGAAATGAGAGAGAGAAACGAGGGGAAATAGA
AAGAGCAGACACGAAGGCGAAAAGCGAGGTTGCAGGATAGTCGGTCGATT
CATGATGCTGAGAAAAGGAAGAACATGTCATCAAACAAGCATTAAAAAAA
TATAGGGGGAGGCGTGCGAGGTAAAAAAGAAGAAAAAAGGGAGAGGGATA
CATGAAGAAAACGTAATCAAACAAGCATGAAAAAAAG
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protein sequence of NO16G01100.3

>NO16G01100.3-protein ID=NO16G01100.3-protein|Name=NO16G01100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MSRLYARFSLTVILVSVIVALTIMDRFLLVARAAKALPVACGGRPTSATA
RNAMASFTIARSSCAGRVVSSRTTLMAHRPFFLCSRGVGAGGGREEETLV
VQPFAVNALNTPGVRQGCTENRNIRLSRFVRHFASSSTPPPNPPPGREGD
SHKHKTTELYEDAKDKAEHLWEDTKEAASEAKETLADATSVAKEKLQKTS
GTVAEKVKDMTQTMKEKAQEAKGKVKDTKESAKHKAEEAYDTVTEKLGTT
KQSAREYQKGLEETASETMDAAGDNVHLKQKVIALGASCACPKFVFDLEW
KTPYLFATSVPYSVRPCFSLHRHLRPRARPHTRSITPKTPFRRG*
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mRNA from alignment at chr16:346167..348274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01100.3 ID=NO16G01100.3|Name=NO16G01100.3|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp|location=Sequence derived from alignment at chr16:346167..348274+ (Nannochloropsis oceanica)
ATTTAGGCATTTGAGAGTAAGCGAAATGAACCACTAAGACAATCTTGTCT
CAAGGTGCTGGCATGACTCAACCTCCTCTCTCTTCCGGCACGTCCCAACC
CACGTGTACCCCACGTGTACAGAACAACACTTTGTAACACAACGGACTGC
TCGAATGTCCCGCCTGTACGCGCGTTTCTCTCTGACTGTGATTCTTGTCT
CAGTCATTGTCGCCTTAACTATCATGGACCGCTTCCTCCTTGTGGCACGT
GCGGCCAAGGCCCTGCCTGTGGCGTGTGGTGGACGCCCTACTTCTGCGAC
GGCCCGTAACGCCATGGCTTCCTTTACCATTGCACGTAGCTCTTGTGCTG
GTAGAGTCGTCTCATCGCGCACCACACTTATGGCTCATCGTCCTTTCTTC
CTTTGCAGCCGTGGTGTTGGCGCGGGAGGTGGGCGTGAGGAGGAAACGCT
CGTCGTCCAGCCTTTCGCGGTCAACGCCCTCAACACTCCGGGGGTGCGAC
AAGGGTACGTTTGTGTCAGGGATCGAGATCCCACAGGTCGTGTGTTCTGA
TGTGTCGATCGATATTCTGCCACCTACAGGTGCACTGAAAACAGGAACAT
TCGCCTTTCGCGCTTTGTCCGGCACTTTGCCTCTTCCTCAACCCCCCCGC
CAAACCCGCCGCCAGGACGAGAAGGGGATTCCCACAAGCACAAGACAACT
GAGCTTTATGAAGACGCCAAGGACAAAGCCGAGCATTTATGGGAGGATAC
AAAAGAGGCAGCAAGCGAGGCGAAAGAGACACTGGCCGATGCTACATCCG
TTGCTAAAGAGAAACTCCAGAAAACGTCTGGCACGGTAGCGGAGAAAGTG
AAGGATATGACTCAGACTATGAAAGAGAAGGCGCAAGAGGCGAAAGGAAA
GGTCAAGGACACCAAGGAGGTGAGCGACACGGAAGTTGTTATGCGGAATA
TTTTGGGTCATCGGACCACTATTCATTCCCAATCGCATCTTGTAACTCTT
CGCTACTTTATCACGGCTTTTTATTTCTTATGCAGAGCGCCAAGCACAAG
GCGGAGGAGGCATACGACACAGTGACAGAGAAGCTAGGAACTACGAAGCA
AAGCGCACGAGAGTACCAGAAAGGCTTAGAAGAGACAGCGAGCGAGACCA
TGGACGGTAAGTGTACGACGAGGAAATGAAATTCTTCAGAAGCGGAAGGT
CGGGACTTGTCGTGTCTTGGTTCAAGGTGTGTTTATTGATGAGTAGAAGG
GGGGGGGAGGGGGGGGGGCAACGATTTCTCTGATTTGGCTTTTGATTACT
TCCCACTGACTCATCTCTCTTAATTTCCAATTACAGCAGCGGGAGATAAC
GTGCACCTCAAGCAAAAGGTAATTGCATTGGGAGCAAGTTGTGCGTGCCC
CAAGTTTGTTTTTGATTTGGAATGGAAGACACCGTATTTGTTTGCAACCT
CAGTACCTTATTCTGTCCGTCCTTGTTTTTCGTTGCACAGGCATCTGAGG
CCAAGAGCAAGGCCGCACACACGCTCGATAACGCCCAAGACGCCGTTCAG
GAGGGGATGAAGGACGCAGAGGATTATTTGGAAGGAAAGAGCGAGCAGGC
CAGTGAGATGGTAAGCCCCCGGTGGAGGAGAGAGGGAGGGAAGGGGGGTA
GGAGGGTAGTGGGAGGGCGAGAGTATCCTGTATATGCGTCGTTTTGTCTG
AAAATTTCCGCTTTGATCAATCGAGGGGCTTACAACATCGCGTGAAGTAA
CATCACGACACCGTCTTCTATCCCAAAATCTTTCATGGAATCCCCTGCCT
CGTCGTGCAGGGAGAGGATGTCAAGGATCGTGCCAGTCGGGCCAAGGAGG
AGCTTAAGACGTCCAAGGACAAGAAGTAGACGAAAGGGCTGAAATGAGAG
AGAGAAACGAGGGGAAATAGAAAGAGCAGACACGAAGGCGAAAAGCGAGG
TTGCAGGATAGTCGGTCGATTCATGATGCTGAGAAAAGGAAGAACATGTC
ATCAAACAAGCATTAAAAAAATATAGGGGGAGGCGTGCGAGGTAAAAAAG
AAGAAAAAAGGGAGAGGGATACATGAAGAAAACGTAATCAAACAAGCATG
AAAAAAAG
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Coding sequence (CDS) from alignment at chr16:346167..348274+

>NO16G01100.3 ID=NO16G01100.3|Name=NO16G01100.3|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr16:346167..348274+ (Nannochloropsis oceanica)
ATGTCCCGCCTGTACGCGCGTTTCTCTCTGACTGTGATTCTTGTCTCAGT
CATTGTCGCCTTAACTATCATGGACCGCTTCCTCCTTGTGGCACGTGCGG
CCAAGGCCCTGCCTGTGGCGTGTGGTGGACGCCCTACTTCTGCGACGGCC
CGTAACGCCATGGCTTCCTTTACCATTGCACGTAGCTCTTGTGCTGGTAG
AGTCGTCTCATCGCGCACCACACTTATGGCTCATCGTCCTTTCTTCCTTT
GCAGCCGTGGTGTTGGCGCGGGAGGTGGGCGTGAGGAGGAAACGCTCGTC
GTCCAGCCTTTCGCGGTCAACGCCCTCAACACTCCGGGGGTGCGACAAGG
GTGCACTGAAAACAGGAACATTCGCCTTTCGCGCTTTGTCCGGCACTTTG
CCTCTTCCTCAACCCCCCCGCCAAACCCGCCGCCAGGACGAGAAGGGGAT
TCCCACAAGCACAAGACAACTGAGCTTTATGAAGACGCCAAGGACAAAGC
CGAGCATTTATGGGAGGATACAAAAGAGGCAGCAAGCGAGGCGAAAGAGA
CACTGGCCGATGCTACATCCGTTGCTAAAGAGAAACTCCAGAAAACGTCT
GGCACGGTAGCGGAGAAAGTGAAGGATATGACTCAGACTATGAAAGAGAA
GGCGCAAGAGGCGAAAGGAAAGGTCAAGGACACCAAGGAGAGCGCCAAGC
ACAAGGCGGAGGAGGCATACGACACAGTGACAGAGAAGCTAGGAACTACG
AAGCAAAGCGCACGAGAGTACCAGAAAGGCTTAGAAGAGACAGCGAGCGA
GACCATGGACGCAGCGGGAGATAACGTGCACCTCAAGCAAAAGGTAATTG
CATTGGGAGCAAGTTGTGCGTGCCCCAAGTTTGTTTTTGATTTGGAATGG
AAGACACCGTATTTGTTTGCAACCTCAGTACCTTATTCTGTCCGTCCTTG
TTTTTCGTTGCACAGGCATCTGAGGCCAAGAGCAAGGCCGCACACACGCT
CGATAACGCCCAAGACGCCGTTCAGGAGGGGATGA
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Synonyms
Publications