NO16G01040, NO16G01040 (gene) Nannochloropsis oceanica

Overview
NameNO16G01040
Unique NameNO16G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2691
Alignment locationchr16:331244..333934 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:331244..333934 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01040 vs. NCBI_GenBank
Match: EWM24031.1 (hypothetical protein Naga_100040g20 [Nannochloropsis gaditana])

HSP 1 Score: 344.0 bits (881), Expect = 1.400e-90
Identity = 310/875 (35.43%), Postives = 404/875 (46.17%), Query Frame = 0 
Query:    1 MKTRLALFAATSWHAAGVVAFVLPG-SRLPKSCSTTTSPAIIST-TTSTTRLAPIHVKADWFDRIPNAPEGADEGSMDDGMTSVQYHNRRKKDNELAVAGDELRAAVRDAIWELDDRIHEMLPYDEKDADADPMYFLNALEHTLEGFGSHSKAMTDENGRVVQXXXXXXXXXXXXXXXXXXXXXAMINKEIAMISS--------STKDIFSKAQSSAEAMQASLTEALGEGVKLA--NAASDSLSTATDDTRQQNQENVASAFTPGSTMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGFCEEETPRRRPQVTKGRSQRWVDERNPRSSXXXXXXXXXXXXXLKRVEAAPPMVPAPVKLTPLTTGTAS---KATTPSWATKMGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKEVNGPALKVKIPSMPAEEAAKVIEELSSPSAPKTIKRMTTGADRARGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADANLNPMPPVDRTSVENILRDSRMAAVEEWHRTRSVEKEMSLEDKVLLVETRLVDEILAGPSEAIMNYINVLEKIGEHQATPDTTVGAAVAAGNWDLAYSSAPVAPFFSLPRMLARFLVGVSAKVESGGKNVVYRSIFKFFDWFPRLRRTQKAVVSMSADSPRKTVEVMSGRPRFTLGKLFSFVAPKLPSFGKKKAAPATLPGEEPRLMNTCTYLGAHLKICRLMRTPGVSADPLLAVFLRGKAEGNGRVGGEMTEDEGE 861
            MK+++AL A T     GV AFV+PG  RLP S   +    I +  T S  +LAP+  K D F+R     E  +  S  +   S +   + K      + GD  R A+R+A+W+LDD+IHE LPYDE  A+ DPMYF++A++  L    S  K  +    +                        + +++++++ S+        S +D+ SK Q++A A QA + EAL EG+K                              +PG T                                                          T    E+T        K RS+RWV+ER                   K    +PP   APV  +    G  +   +A+ P W  +  G                XXXXXXXXXXXXXXXXXXXXXXXX                                         P LKV  P+M A  AA++ + LS    P+ +KRMTT ADR+RGV                                                                          GAA+ +LN MPP DR+SVE+IL DS+ AAVEEWHRTRS+E+EMSLEDKVL VE+RL+DEI AGPSEAI+NY+ VLE+IGEHQA P  T   +     WDLAYSS PV+PF SLPR LARFLV V+ K+E GGK VV++++FKF +WFPRLRRTQ A VS+   +PRK+VEVM+GRPRF LG+LF+   P+L     + A  AT     P L +TCTY+GAHLKICR  R+PGVSA+PLLAVF RG +    +  G   E+EGE
Sbjct:    1 MKSQIALLAVTFPPLLGVGAFVIPGKGRLPASVPISPIKTIFTIFTASKPQLAPLQAKVDLFNRASLPSETGNNHSGGEASPSERVPEKEK------LPGD-FREALRNALWDLDDKIHEFLPYDEASAEVDPMYFVHAIQDRLNQIASSRKMASKTPAK--------------SSPAATHSSTSAVDRDVSLTSTTAVTSLQCSAQDVLSKTQAAATATQAPVVEALQEGIKQVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGITPGE---------------------------------------------------GGSTTLMYREDT-----AAVKTRSKRWVEER-------VRLDRARPGGAPKPALESPPRTSAPVAPSSRDVGAGNAGKRASQPRW--RRDGDREEALRRREKVQIARXXXXXXXXXXXXXXXXXXXXXXXXSASVQGPF-----------------------------AAEDPPLKVSKPAMEATVAAEMAQVLSQ---PRNVKRMTTRADRSRGV------------LVVDGVEDLTMPAATTTVQEAMRQAASQRPKALIDTAEELRIGPLETTVSPRMVTPPSPTLTGAAEEDLNFMPPADRSSVEHILLDSKTAAVEEWHRTRSLEQEMSLEDKVLAVESRLMDEIRAGPSEAILNYVTVLERIGEHQALPGKT-SVSEGPQRWDLAYSSLPVSPFLSLPRFLARFLVNVAVKMEGGGKTVVFQAVFKFLEWFPRLRRTQTATVSVL--TPRKSVEVMNGRPRFRLGRLFTITQPRLRLPFIRNAKKATDSLAPPELTDTCTYMGAHLKICRWTRSPGVSAEPLLAVFFRGHSPAKNQEWG--VEEEGE 740
The following BLAST results are available for this feature:
BLAST of NO16G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24031.11.400e-9035.43hypothetical protein Naga_100040g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003092NSK003092Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01040.1NO16G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100040g20gene6449Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01040.1NO16G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01040 ID=NO16G01040|Name=NO16G01040|organism=Nannochloropsis oceanica|type=gene|length=2691bp
ATGAAGACTCGCCTCGCACTCTTCGCTGCGACTTCGTGGCATGCGGCCGG
AGTGGTGGCTTTCGTTCTGCCGGGCTCCCGACTCCCCAAGTCTTGCTCCA
CGACGACCAGCCCGGCGATCATCTCCACAACCACCTCCACTACTCGCCTT
GCCCCTATCCATGTCAAGGCCGATTGGTTCGATCGCATCCCCAATGCGCC
GGAAGGTGCAGATGAGGGGTCGATGGACGATGGCATGACCTCGGTCCAAT
ACCACAACCGAAGGAAGAAGGACAACGAGTTAGCTGTCGCTGGGGACGAA
TTGCGAGCAGCCGTGCGCGATGCTATTTGGGAGTTAGACGATCGTATCCA
CGAGATGCTGCCATATGACGAGAAGGACGCCGATGCTGACCCGATGTATT
TTTTGAATGCCTTGGAGCATACATTGGAGGGGTTCGGGTCGCACAGTAAA
GCGATGACGGACGAAAATGGCAGGGTTGTACAGCCGGGCGGCAGTAGCAG
CGGCAGCAGCAGCAGCAGCAGGAGGAACGATGAAAACAATATCACAGCGA
TGATTAACAAAGAGATTGCGATGATTAGCAGCAGCACCAAAGATATTTTT
AGTAAGGCCCAGTCAAGCGCCGAGGCGATGCAGGCTTCCCTAACGGAAGC
TCTCGGTGAAGGTGTCAAGCTAGCCAATGCTGCCAGCGATAGCCTGTCCA
CAGCCACGGATGATACCCGACAACAAAATCAAGAAAATGTGGCTTCAGCG
TTCACGCCTGGCTCTACCATGGCCTCATCCTCAGTGGTTGAACGTCCGGC
GGCGGCAGCAGCACCAGCAGCACCAGCAGCAGCGAAGGAGAAATCTGCTC
CAGTCGTTGCTTCTCCTTCCCCTGCTGTTCCTGATGTTGTCGCTGCTTCA
CCTTCTGTACCTGTCGTCGAACCTGCGTCCGAATCGGTGACCACTGGGTT
CTGTGAGGAGGAGACTCCTCGACGCCGACCGCAAGTCACGAAGGGTCGCA
GTCAACGGTGGGTGGACGAACGCAATCCCCGCTCCTCAAGTGCTGCTACT
GCTACCACCCGCCGACCACAGCAGCAGCTCAAGAGGGTGGAGGCCGCACC
GCCAATGGTACCTGCACCTGTGAAGCTCACTCCCCTCACGACTGGTACTG
CGTCAAAGGCCACGACACCGAGCTGGGCCACCAAGATGGGTGGTGCTCCG
GGAGGCATCCCTCCTCGCAAGCGTCGGGACCAGGAACGGGAGGAAGAACA
ACGCCGAAGGAAGAAGGCAGAGGCCGCTCTTGCCCAAGCCCAGCAACGTC
TCCAGCTGCACAAGCAAAAGATGCCTCCTCCTTCGTCTTCCCCTGTATCG
GCAGCAGCATCGGTAGATAAGGCTGTAATCGCTGCCTCCCCTGCTCCTCC
TGCTGCTGCCGCGTCGGTTGATAAGGAGGTGAATGGGCCTGCTCTCAAGG
TGAAGATCCCGTCGATGCCCGCCGAGGAAGCAGCGAAGGTGATCGAGGAG
CTTTCCTCCCCCTCAGCCCCCAAGACCATTAAGCGGATGACGACTGGGGC
AGACCGGGCCCGCGGCGTGATAGTCGTCGATGACGACGTTCTCTCCGTCT
CTTCCCCCACTAGCGCCACCACCGTGCAGCAGGCCATGAAACAAGCTAAG
GCAAAGAGCAGAATCACAACCACCAAGGCCGTCATCACCACCGCAGCTGA
CCTTCTCGTTCCTCCTCCCTCGGCTCCGTCTACCACCGAACCCACCTCTG
CCGCCGCCTCCACCACCATCTCTTCTCCGCCATCCCTCCTGGGTGCCGCC
GACGCGAACCTCAACCCCATGCCTCCAGTCGACCGGACATCAGTCGAAAA
TATCCTCCGTGACAGCAGAATGGCCGCCGTGGAGGAATGGCATCGCACCC
GCTCCGTGGAAAAAGAGATGAGCCTCGAGGATAAGGTCCTCCTGGTCGAA
ACTCGACTTGTGGATGAAATTCTGGCAGGTCCCTCAGAGGCTATCATGAA
CTATATAAATGTCTTGGAGAAGATTGGAGAGCACCAAGCCACGCCTGACA
CCACAGTGGGTGCCGCGGTGGCCGCGGGAAATTGGGATTTGGCCTATAGC
AGCGCGCCGGTCGCGCCATTCTTCTCGTTGCCGAGGATGTTGGCGAGGTT
CTTGGTGGGTGTGAGTGCGAAGGTGGAGTCGGGGGGTAAGAACGTCGTGT
ACCGGTCGATCTTCAAATTTTTTGATTGGTTCCCTCGCTTGAGGCGGACA
CAAAAGGCGGTGGTGTCCATGAGTGCGGATTCGCCGAGAAAGACGGTAGA
GGTAATGAGCGGCCGCCCGCGCTTTACTCTTGGGAAGCTCTTTTCGTTTG
TTGCACCCAAGCTTCCTTCTTTTGGAAAGAAGAAGGCTGCTCCTGCTACT
TTGCCCGGGGAAGAACCGAGACTGATGAACACGTGCACTTATTTGGGTGC
TCACTTGAAGATTTGCCGGTTGATGCGGACACCCGGTGTCTCGGCGGACC
CCTTACTGGCCGTTTTCCTGCGGGGGAAGGCGGAAGGGAATGGGAGGGTG
GGAGGGGAGATGACGGAGGACGAGGGGGAGGAGTTGTTGGTGACTGGTCG
AGGGGGTGTCGGAGGGGCGAAAAGTGGGAGTGGAAAAATATTCGGTCGGT
GGGCAAAGGCCTCCAAGGGAGGGAACCCGAGCACGGCTTAA
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protein sequence of NO16G01040.1

>NO16G01040.1-protein ID=NO16G01040.1-protein|Name=NO16G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=897bp
MKTRLALFAATSWHAAGVVAFVLPGSRLPKSCSTTTSPAIISTTTSTTRL
APIHVKADWFDRIPNAPEGADEGSMDDGMTSVQYHNRRKKDNELAVAGDE
LRAAVRDAIWELDDRIHEMLPYDEKDADADPMYFLNALEHTLEGFGSHSK
AMTDENGRVVQPGGSSSGSSSSSRRNDENNITAMINKEIAMISSSTKDIF
SKAQSSAEAMQASLTEALGEGVKLANAASDSLSTATDDTRQQNQENVASA
FTPGSTMASSSVVERPAAAAAPAAPAAAKEKSAPVVASPSPAVPDVVAAS
PSVPVVEPASESVTTGFCEEETPRRRPQVTKGRSQRWVDERNPRSSSAAT
ATTRRPQQQLKRVEAAPPMVPAPVKLTPLTTGTASKATTPSWATKMGGAP
GGIPPRKRRDQEREEEQRRRKKAEAALAQAQQRLQLHKQKMPPPSSSPVS
AAASVDKAVIAASPAPPAAAASVDKEVNGPALKVKIPSMPAEEAAKVIEE
LSSPSAPKTIKRMTTGADRARGVIVVDDDVLSVSSPTSATTVQQAMKQAK
AKSRITTTKAVITTAADLLVPPPSAPSTTEPTSAAASTTISSPPSLLGAA
DANLNPMPPVDRTSVENILRDSRMAAVEEWHRTRSVEKEMSLEDKVLLVE
TRLVDEILAGPSEAIMNYINVLEKIGEHQATPDTTVGAAVAAGNWDLAYS
SAPVAPFFSLPRMLARFLVGVSAKVESGGKNVVYRSIFKFFDWFPRLRRT
QKAVVSMSADSPRKTVEVMSGRPRFTLGKLFSFVAPKLPSFGKKKAAPAT
LPGEEPRLMNTCTYLGAHLKICRLMRTPGVSADPLLAVFLRGKAEGNGRV
GGEMTEDEGEELLVTGRGGVGGAKSGSGKIFGRWAKASKGGNPSTA*
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Synonyms
Publications