NO16G01020, NO16G01020 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G01020 vs. NCBI_GenBank
Match: EWM24001.1 (rnp-1 like rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 268.9 bits (686), Expect = 1.000e-68 Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0
Query: 11 LMALASVHAFLPMPCRMPTNMKVGQSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTR-GGGYGGNNN 157
LMALASV AFLP PCRMP MKVG+SSSTGR KSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFA+QAGQVVNVKIILD+ETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTR GGGYGG+NN
Sbjct: 15 LMALASVRAFLPSPCRMPPTMKVGKSSSTGRGKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGGYGGDNN 161
BLAST of NO16G01020 vs. NCBI_GenBank
Match: WP_102242358.1 (RNA-binding protein [Bacteriovorax stolpii] >AUN97063.1 RNA-binding protein [Bacteriovorax stolpii]) HSP 1 Score: 82.0 bits (201), Expect = 1.800e-12 Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 0
Query: 62 TQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGYGGNNN 157
T++ V NLP+ E L+ + AG V +VKII+D+ETGRSKG+GFV A A+ +LDG E GR L++ A K P GGG+GG +
Sbjct: 3 TKLYVGNLPYSAKEESLKEHFSSAGSVASVKIIIDRETGRSKGFGFVEMDSDDGAQNAVSQLDGQEFEGRSLRVSEA--KPQPERTGGGFGGGGS 95
BLAST of NO16G01020 vs. NCBI_GenBank
Match: WP_091547949.1 (RNA-binding protein [Thermoflexibacter ruber] >SFF34086.1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [Thermoflexibacter ruber]) HSP 1 Score: 81.3 bits (199), Expect = 3.100e-12 Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0
Query: 64 IMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGYGGNNNNY 159
I VSN+ F + EL+ A+ G+V +VKII DK TG+SKG+GF+ A A+E+L+G+ELGGR ++++ A+ KT + GGY GN+N Y
Sbjct: 3 IYVSNISFKLTEGELQEAFAEFGEVSSVKIITDKFTGKSKGFGFIEMENDDEAANAIEQLNGIELGGREIQVKKALPKTENSGSRGGY-GNDNRY 96
BLAST of NO16G01020 vs. NCBI_GenBank
Match: OFX29003.1 (RNA-binding protein [Bacteroidetes bacterium GWA2_42_15] >OFX97540.1 RNA-binding protein [Bacteroidetes bacterium GWE2_42_39] >OFY43765.1 RNA-binding protein [Bacteroidetes bacterium GWF2_42_66]) HSP 1 Score: 80.9 bits (198), Expect = 4.000e-12 Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 0
Query: 64 IMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKI---RPAIRKTYPNTRGGGYGG 154
I V NL F+ + EL+ A+ G+VV+VKI+ D++TGR+KG+GFV E A A+E L+G E+ GR +++ RP K+ +RGGG+GG
Sbjct: 3 IYVGNLDFNLTEAELQQVFAEYGEVVSVKIVKDRDTGRAKGFGFVEMAEDSDAKTAIEELEGAEIRGRNIRVNEARPKPEKSDRPSRGGGFGG 95
BLAST of NO16G01020 vs. NCBI_GenBank
Match: PIT98878.1 (RNA-binding protein [Bdellovibrionales bacterium CG10_big_fil_rev_8_21_14_0_10_45_34]) HSP 1 Score: 80.5 bits (197), Expect = 5.200e-12 Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0
Query: 63 QIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGYGGNNNNY 159
+I V NLP+ S EEL AQ G+V++ +I+ D+ETGRSKG+GFV A A+E+LDG L GR LK+ A + GGG GG N+
Sbjct: 4 KIYVGNLPYRLSEEELMGHFAQMGEVLSAQIVTDRETGRSKGFGFVEMQSADEAKSAVEKLDGQPLAGRNLKVTEARPREERPRNGGGDGGFKRNF 99
BLAST of NO16G01020 vs. NCBI_GenBank
Match: WP_013608552.1 (RNA-binding protein [Sphaerochaeta globosa] >ADY14709.1 RNP-1 like RNA-binding protein [Sphaerochaeta globosa str. Buddy]) HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12 Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0
Query: 63 QIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYP 145
+I V NL ++TS EEL AQ G VV+ II+D+ET R KG+GFV E +A A+ +LDG E+GGR L++ AI K P
Sbjct: 4 KIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAISQLDGKEIGGRNLRVNEAIAKPRP 85
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_015813826.1 (PREDICTED: RNA-binding protein 39-like isoform X1 [Nothobranchius furzeri]) HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12 Identity = 38/111 (34.23%), Postives = 69/111 (62.16%), Query Frame = 0
Query: 35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
Q+S ++++ N++++ + G P ++ V +L F+ + E L G++ N+++++D ETGRSKGYGF+ F++ A ALE+L+G EL GRP+K+ +T P+
Sbjct: 196 QASQAEKNRAAAAANNLQKALCG---PMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDTECAKKALEQLNGFELAGRPMKVGHVTERTDPS 303
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_015813827.1 (PREDICTED: RNA-binding protein 39-like isoform X2 [Nothobranchius furzeri]) HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12 Identity = 38/111 (34.23%), Postives = 69/111 (62.16%), Query Frame = 0
Query: 35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
Q+S ++++ N++++ + G P ++ V +L F+ + E L G++ N+++++D ETGRSKGYGF+ F++ A ALE+L+G EL GRP+K+ +T P+
Sbjct: 196 QASQAEKNRAAAAANNLQKALCG---PMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDTECAKKALEQLNGFELAGRPMKVGHVTERTDPS 303
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_024125730.1 (RNA-binding protein 39-like isoform X7 [Oryzias melastigma]) HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12 Identity = 37/111 (33.33%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
Q+S ++++ N+++ + G P ++ V +L F+ + + L G++ N+++++D ETGRSKGYGF+ F++ A ALE+L+G EL GRP+K+ +T P+
Sbjct: 87 QASQAEKNRAAAAANNLQRGMTG---PMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDPS 194
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_024125724.1 (RNA-binding protein 39-like isoform X2 [Oryzias melastigma]) HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12 Identity = 37/111 (33.33%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
Q+S ++++ N+++ + G P ++ V +L F+ + + L G++ N+++++D ETGRSKGYGF+ F++ A ALE+L+G EL GRP+K+ +T P+
Sbjct: 206 QASQAEKNRAAAAANNLQRGMTG---PMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDPS 313 The following BLAST results are available for this feature:
BLAST of NO16G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01020 ID=NO16G01020|Name=NO16G01020|organism=Nannochloropsis oceanica|type=gene|length=2046bpback to top protein sequence of NO16G01020.1 >NO16G01020.1-protein ID=NO16G01020.1-protein|Name=NO16G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bpback to top Synonyms
Publications
|