NO16G01020, NO16G01020 (gene) Nannochloropsis oceanica

Overview
NameNO16G01020
Unique NameNO16G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2046
Alignment locationchr16:326594..328639 +

Link to JBrowse

Properties
Property NameValue
DescriptionRnp-1 like rna-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:326594..328639 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO16G01020 vs. NCBI_GenBank
Match: EWM24001.1 (rnp-1 like rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 1.000e-68
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0
Query:   11 LMALASVHAFLPMPCRMPTNMKVGQSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTR-GGGYGGNNN 157
            LMALASV AFLP PCRMP  MKVG+SSSTGR KSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFA+QAGQVVNVKIILD+ETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTR GGGYGG+NN
Sbjct:   15 LMALASVRAFLPSPCRMPPTMKVGKSSSTGRGKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGGYGGDNN 161          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: WP_102242358.1 (RNA-binding protein [Bacteriovorax stolpii] >AUN97063.1 RNA-binding protein [Bacteriovorax stolpii])

HSP 1 Score: 82.0 bits (201), Expect = 1.800e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 0
Query:   62 TQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGYGGNNN 157
            T++ V NLP+    E L+   + AG V +VKII+D+ETGRSKG+GFV       A  A+ +LDG E  GR L++  A  K  P   GGG+GG  +
Sbjct:    3 TKLYVGNLPYSAKEESLKEHFSSAGSVASVKIIIDRETGRSKGFGFVEMDSDDGAQNAVSQLDGQEFEGRSLRVSEA--KPQPERTGGGFGGGGS 95          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: WP_091547949.1 (RNA-binding protein [Thermoflexibacter ruber] >SFF34086.1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [Thermoflexibacter ruber])

HSP 1 Score: 81.3 bits (199), Expect = 3.100e-12
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0
Query:   64 IMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGYGGNNNNY 159
            I VSN+ F  +  EL+   A+ G+V +VKII DK TG+SKG+GF+       A  A+E+L+G+ELGGR ++++ A+ KT  +   GGY GN+N Y
Sbjct:    3 IYVSNISFKLTEGELQEAFAEFGEVSSVKIITDKFTGKSKGFGFIEMENDDEAANAIEQLNGIELGGREIQVKKALPKTENSGSRGGY-GNDNRY 96          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: OFX29003.1 (RNA-binding protein [Bacteroidetes bacterium GWA2_42_15] >OFX97540.1 RNA-binding protein [Bacteroidetes bacterium GWE2_42_39] >OFY43765.1 RNA-binding protein [Bacteroidetes bacterium GWF2_42_66])

HSP 1 Score: 80.9 bits (198), Expect = 4.000e-12
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   64 IMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKI---RPAIRKTYPNTRGGGYGG 154
            I V NL F+ +  EL+   A+ G+VV+VKI+ D++TGR+KG+GFV   E   A  A+E L+G E+ GR +++   RP   K+   +RGGG+GG
Sbjct:    3 IYVGNLDFNLTEAELQQVFAEYGEVVSVKIVKDRDTGRAKGFGFVEMAEDSDAKTAIEELEGAEIRGRNIRVNEARPKPEKSDRPSRGGGFGG 95          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: PIT98878.1 (RNA-binding protein [Bdellovibrionales bacterium CG10_big_fil_rev_8_21_14_0_10_45_34])

HSP 1 Score: 80.5 bits (197), Expect = 5.200e-12
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 0
Query:   63 QIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGYGGNNNNY 159
            +I V NLP+  S EEL    AQ G+V++ +I+ D+ETGRSKG+GFV       A  A+E+LDG  L GR LK+  A  +      GGG GG   N+
Sbjct:    4 KIYVGNLPYRLSEEELMGHFAQMGEVLSAQIVTDRETGRSKGFGFVEMQSADEAKSAVEKLDGQPLAGRNLKVTEARPREERPRNGGGDGGFKRNF 99          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: WP_013608552.1 (RNA-binding protein [Sphaerochaeta globosa] >ADY14709.1 RNP-1 like RNA-binding protein [Sphaerochaeta globosa str. Buddy])

HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0
Query:   63 QIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYP 145
            +I V NL ++TS EEL    AQ G VV+  II+D+ET R KG+GFV   E  +A  A+ +LDG E+GGR L++  AI K  P
Sbjct:    4 KIYVGNLSYNTSEEELRDLFAQYGTVVSANIIIDRETRRPKGFGFVEMQEDAAADAAISQLDGKEIGGRNLRVNEAIAKPRP 85          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_015813826.1 (PREDICTED: RNA-binding protein 39-like isoform X1 [Nothobranchius furzeri])

HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12
Identity = 38/111 (34.23%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
            Q+S   ++++    N++++ + G   P ++ V +L F+ + E L       G++ N+++++D ETGRSKGYGF+ F++   A  ALE+L+G EL GRP+K+     +T P+
Sbjct:  196 QASQAEKNRAAAAANNLQKALCG---PMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDTECAKKALEQLNGFELAGRPMKVGHVTERTDPS 303          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_015813827.1 (PREDICTED: RNA-binding protein 39-like isoform X2 [Nothobranchius furzeri])

HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12
Identity = 38/111 (34.23%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
            Q+S   ++++    N++++ + G   P ++ V +L F+ + E L       G++ N+++++D ETGRSKGYGF+ F++   A  ALE+L+G EL GRP+K+     +T P+
Sbjct:  196 QASQAEKNRAAAAANNLQKALCG---PMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDTECAKKALEQLNGFELAGRPMKVGHVTERTDPS 303          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_024125730.1 (RNA-binding protein 39-like isoform X7 [Oryzias melastigma])

HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12
Identity = 37/111 (33.33%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
            Q+S   ++++    N+++  + G   P ++ V +L F+ + + L       G++ N+++++D ETGRSKGYGF+ F++   A  ALE+L+G EL GRP+K+     +T P+
Sbjct:   87 QASQAEKNRAAAAANNLQRGMTG---PMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDPS 194          
BLAST of NO16G01020 vs. NCBI_GenBank
Match: XP_024125724.1 (RNA-binding protein 39-like isoform X2 [Oryzias melastigma])

HSP 1 Score: 80.1 bits (196), Expect = 6.800e-12
Identity = 37/111 (33.33%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   35 QSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPN 146
            Q+S   ++++    N+++  + G   P ++ V +L F+ + + L       G++ N+++++D ETGRSKGYGF+ F++   A  ALE+L+G EL GRP+K+     +T P+
Sbjct:  206 QASQAEKNRAAAAANNLQRGMTG---PMRLYVGSLHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDPS 313          
The following BLAST results are available for this feature:
BLAST of NO16G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24001.11.000e-6893.20rnp-1 like rna-binding protein [Nannochloropsis ga... [more]
WP_102242358.11.800e-1244.21RNA-binding protein [Bacteriovorax stolpii] >AUN97... [more]
WP_091547949.13.100e-1245.26RNA-binding protein [Thermoflexibacter ruber] >SFF... [more]
OFX29003.14.000e-1244.09RNA-binding protein [Bacteroidetes bacterium GWA2_... [more]
PIT98878.15.200e-1244.79RNA-binding protein [Bdellovibrionales bacterium C... [more]
WP_013608552.16.800e-1248.78RNA-binding protein [Sphaerochaeta globosa] >ADY14... [more]
XP_015813826.16.800e-1234.23PREDICTED: RNA-binding protein 39-like isoform X1 ... [more]
XP_015813827.16.800e-1234.23PREDICTED: RNA-binding protein 39-like isoform X2 ... [more]
XP_024125730.16.800e-1233.33RNA-binding protein 39-like isoform X7 [Oryzias me... [more]
XP_024125724.16.800e-1233.33RNA-binding protein 39-like isoform X2 [Oryzias me... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003090NSK003090Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01020.1NO16G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593365gene_5977Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g17gene6447Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01020.1NO16G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01020 ID=NO16G01020|Name=NO16G01020|organism=Nannochloropsis oceanica|type=gene|length=2046bp
CGCTCCTCTGTGTGGTCAGGAAGGGGAGAGAAGTAAGGCCGTGTGTTGTA
TCTCCCTTCTCCTTGCTCCTTGTTGCTGTTGGGAAGGATACGTAAAAGAC
TTGCGTGCCACCGCCCAAGCAAGAGCTCTTTGGTCATGGCCAAGGATTGG
ACGGTTTTTTTGTGTTTGCCTGGTCTCTCTGTCTCTGGCCGCGACGGGTT
GTCGTGCGTGTGGATACTCCCCATCTCTCCTCCAAGTTGCTGCTGTTGAT
GAGATTCTGCTGCGTTGGTCGTGGGCCATCCGCCCAAGTGACCACTAGAC
ATTGCATGGCCCTGCCCCACATTCACACCTCTATCGCGCTTGTTTTCCTC
CGTATTACCACACACAGACCCACTTCACCTCCCGTCAGTCAACCATGTTC
AAGATCACCATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGTCCATGC
CTTCCTCCCCATGCCTTGTCGCATGCCCACCAACATGAAGGTCGGGCAGT
CCTCCTCCACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCCATGCGC
GAGAACATCGAGGGCGAGCCCAACCCCACCCAGgtatgtctcgtcttcgt
acgcgagcgggtggtggagagggagaggaggggagtgaggggaaaacaca
cagtcagaaaatcgaggcagatgtgctaggatacgggaatgcagtgtatg
tgcccccattcttgcgctgatctgtagggtgtggagtgcattgttctcct
cacttccgttctgacgtagccatgactctcacccgtcgtgctttgttcct
ccaccgcacacgttcaacctcactcctccctctcgttctccttcacttac
cagaagatttttgttctgagatgccagttacccctattcatctctattcc
tacctttcttccttcctccctccctcccgcctccctcagATCATGGTGTC
CAACCTCCCGTTCGACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCC
AAGCCGGGCAAGTCGTCAACGTCAAGATTATTCTCGACAAAGAGACGGGC
CGCAGCAAGGGTTACGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTAC
TTACGCTCTCGAGCGATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGA
AGATTCGCCCGGCTATCAGGAAAACCTACCCCAACACCCGTGGAGGTGGG
TATGGCGGGAACAACAACAACTACTAAAATTGAAATCGAAGAAGGAGAAG
AGGGAAGGAAGGAGGGAAGGAGGGAGGGGTCTGTGGCCAGTGGGAGTTAA
ATTTGTGAAGTGGCCCGGGTGATGACGTGTGCGGGGGAGGCTGGTTGCAC
GCAGTATGTGTGTGTCGTCCTTCGAGGATTTTCCTCTCTCTCTTTAACCC
TGGCAAAGAGGGAAGGGTTGAGGAAGGGAAGGCGGAACTGTAGCGAGCAG
AAAGAGGGTTCTGTAGGTTGGAATTGCTCATGTGCAGAAGGCACATACCA
CATGGAGGAGGGAAGGCGGGAGAGAGGGAGAGAGGGGGGGAATGCCACTC
CCTTCCCCTTGAGAGTAAAGGCATTGAAGAAATGGAGATCGAAGTTTTAA
TTACTACTAATTCTATTTATTCAGCTGGAGAAAAGAACAGATGTAACATA
TGGGTCGTCGCGTTTCTAAAAACCAAGCAAGCAATCAGAAATAAGGAAGA
AGGGAGGGGTGAAGGGAGAGATTGAGGGAGCGAAGGCTGGGGGGAGGTCT
CTAGACACGAACATGAGAAAAAGGGAGGAGAAGAGGAAGATAAGTATGAG
GAGGAAGAGCTGGAGTCCAATGACAATGTGGAGATGTGTGAAAGAGGGAG
TGAAATAACATGAGTGTGGAAAGAGATCAGCGACAGCGTCAGCAGCCCAG
AGGGAAACCAGTCATACAGATGATAATATTCACTGCAGCTGGCAGGCAGC
AGCATCAGCAGCAGTAAGAAGCAAGGACCTCAACAAACAATCACCGGAAA
GAGACAGAGGAAGAACAAGAAGAAGAAGAAGAAATCTGTCATCCCA
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protein sequence of NO16G01020.1

>NO16G01020.1-protein ID=NO16G01020.1-protein|Name=NO16G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MFKITITCAFLMALASVHAFLPMPCRMPTNMKVGQSSSTGRSKSIGIINS
MRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETG
RSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGG
YGGNNNNY*
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Synonyms
Publications