NO16G01020.1, NO16G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G01020.1
Unique NameNO16G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1690
Alignment locationchr16:326594..328639 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:326594..328639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G01020.1 vs.
Match: EWM24001.1 (rnp-1 like rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 268.9 bits (686), Expect = 1.000e-68
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0 
Query:   11 LMALASVHAFLPMPCRMPTNMKVGQSSSTGRSKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTR-GGGYGGNNN 157
            LMALASV AFLP PCRMP  MKVG+SSSTGR KSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFA+QAGQVVNVKIILD+ETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTR GGGYGG+NN
Sbjct:   15 LMALASVRAFLPSPCRMPPTMKVGKSSSTGRGKSIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGGGYGGDNN 161
The following BLAST results are available for this feature:
BLAST of NO16G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24001.11.000e-6893.20rnp-1 like rna-binding protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G01020NO16G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G01020.1NO16G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G01020.1.cds1NO16G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G01020.1.cds2NO16G01020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G01020.1 ID=NO16G01020.1|Name=NO16G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1690bp
CGCTCCTCTGTGTGGTCAGGAAGGGGAGAGAAGTAAGGCCGTGTGTTGTA
TCTCCCTTCTCCTTGCTCCTTGTTGCTGTTGGGAAGGATACGTAAAAGAC
TTGCGTGCCACCGCCCAAGCAAGAGCTCTTTGGTCATGGCCAAGGATTGG
ACGGTTTTTTTGTGTTTGCCTGGTCTCTCTGTCTCTGGCCGCGACGGGTT
GTCGTGCGTGTGGATACTCCCCATCTCTCCTCCAAGTTGCTGCTGTTGAT
GAGATTCTGCTGCGTTGGTCGTGGGCCATCCGCCCAAGTGACCACTAGAC
ATTGCATGGCCCTGCCCCACATTCACACCTCTATCGCGCTTGTTTTCCTC
CGTATTACCACACACAGACCCACTTCACCTCCCGTCAGTCAACCATGTTC
AAGATCACCATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGTCCATGC
CTTCCTCCCCATGCCTTGTCGCATGCCCACCAACATGAAGGTCGGGCAGT
CCTCCTCCACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCCATGCGC
GAGAACATCGAGGGCGAGCCCAACCCCACCCAGATCATGGTGTCCAACCT
CCCGTTCGACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCCAAGCCG
GGCAAGTCGTCAACGTCAAGATTATTCTCGACAAAGAGACGGGCCGCAGC
AAGGGTTACGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTACTTACGC
TCTCGAGCGATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGAAGATTC
GCCCGGCTATCAGGAAAACCTACCCCAACACCCGTGGAGGTGGGTATGGC
GGGAACAACAACAACTACTAAAATTGAAATCGAAGAAGGAGAAGAGGGAA
GGAAGGAGGGAAGGAGGGAGGGGTCTGTGGCCAGTGGGAGTTAAATTTGT
GAAGTGGCCCGGGTGATGACGTGTGCGGGGGAGGCTGGTTGCACGCAGTA
TGTGTGTGTCGTCCTTCGAGGATTTTCCTCTCTCTCTTTAACCCTGGCAA
AGAGGGAAGGGTTGAGGAAGGGAAGGCGGAACTGTAGCGAGCAGAAAGAG
GGTTCTGTAGGTTGGAATTGCTCATGTGCAGAAGGCACATACCACATGGA
GGAGGGAAGGCGGGAGAGAGGGAGAGAGGGGGGGAATGCCACTCCCTTCC
CCTTGAGAGTAAAGGCATTGAAGAAATGGAGATCGAAGTTTTAATTACTA
CTAATTCTATTTATTCAGCTGGAGAAAAGAACAGATGTAACATATGGGTC
GTCGCGTTTCTAAAAACCAAGCAAGCAATCAGAAATAAGGAAGAAGGGAG
GGGTGAAGGGAGAGATTGAGGGAGCGAAGGCTGGGGGGAGGTCTCTAGAC
ACGAACATGAGAAAAAGGGAGGAGAAGAGGAAGATAAGTATGAGGAGGAA
GAGCTGGAGTCCAATGACAATGTGGAGATGTGTGAAAGAGGGAGTGAAAT
AACATGAGTGTGGAAAGAGATCAGCGACAGCGTCAGCAGCCCAGAGGGAA
ACCAGTCATACAGATGATAATATTCACTGCAGCTGGCAGGCAGCAGCATC
AGCAGCAGTAAGAAGCAAGGACCTCAACAAACAATCACCGGAAAGAGACA
GAGGAAGAACAAGAAGAAGAAGAAGAAATCTGTCATCCCA
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protein sequence of NO16G01020.1

>NO16G01020.1-protein ID=NO16G01020.1-protein|Name=NO16G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MFKITITCAFLMALASVHAFLPMPCRMPTNMKVGQSSSTGRSKSIGIINS
MRENIEGEPNPTQIMVSNLPFDTSTEELEAFAAQAGQVVNVKIILDKETG
RSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAIRKTYPNTRGGG
YGGNNNNY*
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mRNA from alignment at chr16:326594..328639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G01020.1 ID=NO16G01020.1|Name=NO16G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at chr16:326594..328639+ (Nannochloropsis oceanica)
CGCTCCTCTGTGTGGTCAGGAAGGGGAGAGAAGTAAGGCCGTGTGTTGTA
TCTCCCTTCTCCTTGCTCCTTGTTGCTGTTGGGAAGGATACGTAAAAGAC
TTGCGTGCCACCGCCCAAGCAAGAGCTCTTTGGTCATGGCCAAGGATTGG
ACGGTTTTTTTGTGTTTGCCTGGTCTCTCTGTCTCTGGCCGCGACGGGTT
GTCGTGCGTGTGGATACTCCCCATCTCTCCTCCAAGTTGCTGCTGTTGAT
GAGATTCTGCTGCGTTGGTCGTGGGCCATCCGCCCAAGTGACCACTAGAC
ATTGCATGGCCCTGCCCCACATTCACACCTCTATCGCGCTTGTTTTCCTC
CGTATTACCACACACAGACCCACTTCACCTCCCGTCAGTCAACCATGTTC
AAGATCACCATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGTCCATGC
CTTCCTCCCCATGCCTTGTCGCATGCCCACCAACATGAAGGTCGGGCAGT
CCTCCTCCACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCCATGCGC
GAGAACATCGAGGGCGAGCCCAACCCCACCCAGGTATGTCTCGTCTTCGT
ACGCGAGCGGGTGGTGGAGAGGGAGAGGAGGGGAGTGAGGGGAAAACACA
CAGTCAGAAAATCGAGGCAGATGTGCTAGGATACGGGAATGCAGTGTATG
TGCCCCCATTCTTGCGCTGATCTGTAGGGTGTGGAGTGCATTGTTCTCCT
CACTTCCGTTCTGACGTAGCCATGACTCTCACCCGTCGTGCTTTGTTCCT
CCACCGCACACGTTCAACCTCACTCCTCCCTCTCGTTCTCCTTCACTTAC
CAGAAGATTTTTGTTCTGAGATGCCAGTTACCCCTATTCATCTCTATTCC
TACCTTTCTTCCTTCCTCCCTCCCTCCCGCCTCCCTCAGATCATGGTGTC
CAACCTCCCGTTCGACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCC
AAGCCGGGCAAGTCGTCAACGTCAAGATTATTCTCGACAAAGAGACGGGC
CGCAGCAAGGGTTACGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTAC
TTACGCTCTCGAGCGATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGA
AGATTCGCCCGGCTATCAGGAAAACCTACCCCAACACCCGTGGAGGTGGG
TATGGCGGGAACAACAACAACTACTAAAATTGAAATCGAAGAAGGAGAAG
AGGGAAGGAAGGAGGGAAGGAGGGAGGGGTCTGTGGCCAGTGGGAGTTAA
ATTTGTGAAGTGGCCCGGGTGATGACGTGTGCGGGGGAGGCTGGTTGCAC
GCAGTATGTGTGTGTCGTCCTTCGAGGATTTTCCTCTCTCTCTTTAACCC
TGGCAAAGAGGGAAGGGTTGAGGAAGGGAAGGCGGAACTGTAGCGAGCAG
AAAGAGGGTTCTGTAGGTTGGAATTGCTCATGTGCAGAAGGCACATACCA
CATGGAGGAGGGAAGGCGGGAGAGAGGGAGAGAGGGGGGGAATGCCACTC
CCTTCCCCTTGAGAGTAAAGGCATTGAAGAAATGGAGATCGAAGTTTTAA
TTACTACTAATTCTATTTATTCAGCTGGAGAAAAGAACAGATGTAACATA
TGGGTCGTCGCGTTTCTAAAAACCAAGCAAGCAATCAGAAATAAGGAAGA
AGGGAGGGGTGAAGGGAGAGATTGAGGGAGCGAAGGCTGGGGGGAGGTCT
CTAGACACGAACATGAGAAAAAGGGAGGAGAAGAGGAAGATAAGTATGAG
GAGGAAGAGCTGGAGTCCAATGACAATGTGGAGATGTGTGAAAGAGGGAG
TGAAATAACATGAGTGTGGAAAGAGATCAGCGACAGCGTCAGCAGCCCAG
AGGGAAACCAGTCATACAGATGATAATATTCACTGCAGCTGGCAGGCAGC
AGCATCAGCAGCAGTAAGAAGCAAGGACCTCAACAAACAATCACCGGAAA
GAGACAGAGGAAGAACAAGAAGAAGAAGAAGAAATCTGTCATCCCA
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Coding sequence (CDS) from alignment at chr16:326594..328639+

>NO16G01020.1 ID=NO16G01020.1|Name=NO16G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr16:326594..328639+ (Nannochloropsis oceanica)
ATGTTCAAGATCACCATCACCTGCGCCTTCCTTATGGCCCTGGCCTCCGT
CCATGCCTTCCTCCCCATGCCTTGTCGCATGCCCACCAACATGAAGGTCG
GGCAGTCCTCCTCCACGGGCCGTAGCAAGAGCATCGGCATCATCAATTCC
ATGCGCGAGAACATCGAGGGCGAGCCCAACCCCACCCAGATCATGGTGTC
CAACCTCCCGTTCGACACCTCCACCGAGGAACTCGAGGCCTTCGCCGCCC
AAGCCGGGCAAGTCGTCAACGTCAAGATTATTCTCGACAAAGAGACGGGC
CGCAGCAAGGGTTACGGCTTCGTGTTGTTCACTGAGCCCTTGTCTGCTAC
TTACGCTCTCGAGCGATTGGACGGGATGGAGCTTGGTGGCCGCCCCTTGA
AGATTCGCCCGGCTATCAGGAAAACCTACCCCAACACCCGTGGAGGTGGG
TATGGCGGGAACAACAACAACTACTAA
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Synonyms
Publications