NO16G00940, NO16G00940 (gene) Nannochloropsis oceanica

Overview
NameNO16G00940
Unique NameNO16G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length745
Alignment locationchr16:305075..305819 -

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Properties
Property NameValue
DescriptionLactoylglutathione lyase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:305075..305819 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029068Glyas_Bleomycin-R_OHBP_Dase
IPR037523VOC
Vocabulary: Molecular Function
TermDefinition
GO:0016829lyase activity
Homology
BLAST of NO16G00940 vs. NCBI_GenBank
Match: EWM23995.1 (lactoylglutathione lyase [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 4.700e-69
Identity = 138/208 (66.35%), Postives = 163/208 (78.37%), Query Frame = 0
Query:    3 LSHPVSRCCLSHVRRH-HLLLLPLPPSSAITPASFTRPYSTSSPPPRSPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAAA 210
            LSHP +      ++ H H L    P +    P+   RP S+S+     PRPFRVLGLQQVAIG+LDK+G  +LWG+VLG+P TGT++S+ ENVDEDI R+GAP  PW VEIDLMQPIDP+K+PKVHVP LNHIGLWVHPL AAVEYL+ QGVRFTPGGIR+GAAGHDVCFIHPKG+   P+SGEGVLIELVQAPP+VV AYE A+ A+
Sbjct:    8 LSHPATVRYGRRLQPHGHTLQSESPGNPTSMPS--CRPLSSSA---LLPRPFRVLGLQQVAIGALDKSGPCRLWGDVLGVPMTGTYKSELENVDEDIFRVGAPDCPWAVEIDLMQPIDPAKAPKVHVPALNHIGLWVHPLTAAVEYLSKQGVRFTPGGIRRGAAGHDVCFIHPKGNEKSPLSGEGVLIELVQAPPEVVRAYESASVAS 210          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: XP_005854094.1 (lactoylglutathione lyase [Nannochloropsis gaditana CCMP526] >EKU22261.1 lactoylglutathione lyase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 268.9 bits (686), Expect = 1.400e-68
Identity = 129/172 (75.00%), Postives = 147/172 (85.47%), Query Frame = 0
Query:   38 RPYSTSSPPPRSPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAAA 210
            RP S+S+     PRPFRVLGLQQVAIG+LDK+G  +LWG+VLG+P TGT++S+ ENVDEDI R+GAP  PW VEIDLMQPIDP+K+PKVHVP LNHIGLWVHPL AAVEYL+ QGVRFTPGGIR+GAAGHDVCFIHPKG+   P+SGEGVLIELVQAPP+VV AYE A   A
Sbjct:    5 RPLSSSA---LLPRPFRVLGLQQVAIGALDKSGPCRLWGDVLGVPMTGTYKSELENVDEDIFRVGAPDCPWAVEIDLMQPIDPAKAPKVHVPALNHIGLWVHPLTAAVEYLSKQGVRFTPGGIRRGAAGHDVCFIHPKGNEKSPLSGEGVLIELVQAPPEVVRAYESAVETA 173          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: WP_028873974.1 (VOC family protein [Tepidiphilus margaritifer])

HSP 1 Score: 235.3 bits (599), Expect = 1.700e-58
Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 0
Query:   49 SPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAA 209
            SPRPFR+LG+QQ+A+G+LDK  L++LW E+ G+P TGTFRS++ENVDEDI+ LGA   P+ VE+DLMQP+DP K P VH  PLNH+GLWV  L  AVE+L+A GVRF PGGIR+GAAG+D+CFIHPKG+   PVSGEGVLIELVQAPP+V+EAY   AAA
Sbjct:    4 SPRPFRILGIQQIALGALDKTRLARLWVELFGLPVTGTFRSERENVDEDIVALGA--GPFKVEVDLMQPLDPEKKPAVHATPLNHVGLWVDDLPKAVEWLSAHGVRFAPGGIRRGAAGYDICFIHPKGNDEFPVSGEGVLIELVQAPPEVIEAYATIAAA 161          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: WP_055422410.1 (VOC family protein [Tepidiphilus thermophilus] >CUB04654.1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [Tepidiphilus thermophilus])

HSP 1 Score: 234.6 bits (597), Expect = 2.900e-58
Identity = 109/162 (67.28%), Postives = 134/162 (82.72%), Query Frame = 0
Query:   49 SPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAAAK 211
            S RPFR+LG+QQ+A+G+LDK  L++LW E+ G+P TGTFRS++ENVDEDI+ LGA   P+ VE+DLMQP+DP K P VH  PLNH+GLWV  L  AVE+L+A GVRF PGGIR+GAAG+D+CFIHPKG+   PVSGEGVLIELVQAPP+V+EAY   AAAA+
Sbjct:    4 SSRPFRILGIQQIALGALDKTRLARLWVELFGLPVTGTFRSERENVDEDIVALGA--GPFKVEVDLMQPLDPEKKPAVHATPLNHVGLWVDDLPKAVEWLSAHGVRFAPGGIRRGAAGYDICFIHPKGNDEFPVSGEGVLIELVQAPPEVIEAYATIAAAAR 163          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: WP_034435298.1 (VOC family protein [Candidatus Contendobacter odensis] >CDH46607.1 Lactoylglutathione lyase [Candidatus Contendobacter odensis Run_B_J11])

HSP 1 Score: 231.5 bits (589), Expect = 2.400e-57
Identity = 108/158 (68.35%), Postives = 134/158 (84.81%), Query Frame = 0
Query:   49 SPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAA 207
            S RPF+VLG+QQ+AIG LDK  LSKLW + LG+  TG FRS++ENVDEDI  +G+   P+ VE+DLMQPIDP+K+PKVH P LNHIGLW+  LAAAVE+LTA+G+RFTPGGIRKGAAG+DVCF+HPKG+ A P+ GEGVLIEL+QAPP+V+EA+ + A
Sbjct:    2 SDRPFKVLGIQQIAIGGLDKTKLSKLWIDTLGLTLTGNFRSERENVDEDIAAIGS--GPFKVEVDLMQPIDPTKAPKVHEPQLNHIGLWISDLAAAVEWLTAKGMRFTPGGIRKGAAGYDVCFLHPKGNDATPLCGEGVLIELIQAPPEVIEAFAKVA 157          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: WP_048676775.1 (VOC family protein [Candidatus Competibacter denitrificans] >CDI04529.1 conserved hypothetical protein [Candidatus Competibacter denitrificans Run_A_D11])

HSP 1 Score: 229.2 bits (583), Expect = 1.200e-56
Identity = 106/158 (67.09%), Postives = 133/158 (84.18%), Query Frame = 0
Query:   49 SPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAA 207
            S RPF+VLG+QQ+AIG LDK  LS+LW + LG+  TG FRS++ENVDEDI  +G+   P+ VE+DLMQPIDP+K+PKVH P LNHIGLW+  L AAVE+LT +G+RFTPGGIRKGAAG+DVCF+HPKG+ A P+SGEGVLIEL+QAPP+V+EA+ + A
Sbjct:    2 SDRPFKVLGIQQIAIGGLDKTKLSRLWVDTLGLTMTGNFRSERENVDEDIAAIGS--GPFKVEVDLMQPIDPAKAPKVHEPQLNHIGLWISDLKAAVEWLTTKGMRFTPGGIRKGAAGYDVCFLHPKGNEATPLSGEGVLIELIQAPPEVIEAFAKVA 157          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: PKN55073.1 (lactoylglutathione lyase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14])

HSP 1 Score: 226.9 bits (577), Expect = 6.000e-56
Identity = 111/161 (68.94%), Postives = 132/161 (81.99%), Query Frame = 0
Query:   49 SPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAAA 210
            S RPFR+LGLQQVAIG  DKA L+ LW  +LG+P  GT+RS++ENVDEDILRLGA   P  VE+DLM+PIDP+++PKVHVP LNH+GLWV  L AAV++LT QGVRFTPGGIRKGAAG+DVCFIHPKG+ A P SGEGVLIEL+QAP +V+ A   +  AA
Sbjct:    2 STRPFRILGLQQVAIGGEDKARLTHLWEGLLGVPRVGTYRSERENVDEDILRLGA--GPLAVEVDLMEPIDPTRAPKVHVPALNHLGLWVDDLTAAVKWLTEQGVRFTPGGIRKGAAGYDVCFIHPKGNDAAPHSGEGVLIELIQAPAEVITATSTSGRAA 160          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: EJK55585.1 (hypothetical protein THAOC_24674 [Thalassiosira oceanica])

HSP 1 Score: 225.7 bits (574), Expect = 1.300e-55
Identity = 115/188 (61.17%), Postives = 138/188 (73.40%), Query Frame = 0
Query:   17 RHHLLLLPLPPSSAITPASFTRPYSTSSPPPRSPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEE 205
            RHH +L     + + T  +   P+   S  P + RPFRV+GLQQVAIG  +K  LS LW  VLG+P  G +RS++ENVDEDIL LG  G P  VE+DLM P+D +KSPKV+VPPLNHIGLWV  L  AVE+L  +GVRFTPGGIRKGA+GHDV FIHPKG+   P+ GEGVLIELVQAPP+V+EA EE
Sbjct:   13 RHHDVL-----TKSSTSIASATPHRQQSGQP-TERPFRVIGLQQVAIGGRNKTSLSNLWTTVLGVPKVGDYRSERENVDEDILLLGREGCPHAVEVDLMMPLDETKSPKVNVPPLNHIGLWVDRLPEAVEWLEGRGVRFTPGGIRKGASGHDVTFIHPKGNEVTPIGGEGVLIELVQAPPEVIEASEE 194          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: XP_002288440.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93876.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 225.3 bits (573), Expect = 1.700e-55
Identity = 108/153 (70.59%), Postives = 123/153 (80.39%), Query Frame = 0
Query:   49 SPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEA 202
            S +PF+VLGLQQ+AIGSLD + LS LW ++ G+   G F+S+KENVDEDILRLG  GSP  VEIDLM PIDP KSPKVHVP LNHIGLWV  L AAVE++  QGVRFTPGGIRKGAAGHDV FIHPKG+   P+ G GVLIELVQAP  V++A
Sbjct:   65 STKPFQVLGLQQIAIGSLDNSSLSHLWCDIFGVSKIGNFKSEKENVDEDILRLGKEGSPHAVEIDLMMPIDPEKSPKVHVPSLNHIGLWVDDLPAAVEWMANQGVRFTPGGIRKGAAGHDVTFIHPKGNEKSPIGGGGVLIELVQAPQNVIDA 217          
BLAST of NO16G00940 vs. NCBI_GenBank
Match: WP_076504534.1 (VOC family protein [Pseudacidovorax sp. RU35E])

HSP 1 Score: 222.6 bits (566), Expect = 1.100e-54
Identity = 106/164 (64.63%), Postives = 128/164 (78.05%), Query Frame = 0
Query:   46 PPRSPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAAA 210
            P    RPF+VLG+QQ+AIG  DK  L+ LW ++LG+  TGTFRS++ENVDEDI  +G+   P+ VE+DLMQP+DP K P VH  PLNH+GLW+  L  AVE+LTAQGVRF PGGIR+GAAG D+CF+HPKGS   PVSGEGVLIELVQAPP+VV A+   AAAA
Sbjct:    2 PMNKERPFKVLGVQQIAIGGADKQRLATLWVDMLGLEVTGTFRSERENVDEDICAIGS--GPFKVEVDLMQPLDPEKKPAVHATPLNHVGLWIDDLPRAVEWLTAQGVRFAPGGIRRGAAGFDICFLHPKGSDEFPVSGEGVLIELVQAPPEVVNAFGAMAAAA 163          
The following BLAST results are available for this feature:
BLAST of NO16G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23995.14.700e-6966.35lactoylglutathione lyase [Nannochloropsis gaditana... [more]
XP_005854094.11.400e-6875.00lactoylglutathione lyase [Nannochloropsis gaditana... [more]
WP_028873974.11.700e-5868.13VOC family protein [Tepidiphilus margaritifer][more]
WP_055422410.12.900e-5867.28VOC family protein [Tepidiphilus thermophilus] >CU... [more]
WP_034435298.12.400e-5768.35VOC family protein [Candidatus Contendobacter oden... [more]
WP_048676775.11.200e-5667.09VOC family protein [Candidatus Competibacter denit... [more]
PKN55073.16.000e-5668.94lactoylglutathione lyase [Deltaproteobacteria bact... [more]
EJK55585.11.300e-5561.17hypothetical protein THAOC_24674 [Thalassiosira oc... [more]
XP_002288440.11.700e-5570.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
WP_076504534.11.100e-5464.63VOC family protein [Pseudacidovorax sp. RU35E][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003082NSK003082Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00940.1NO16G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593326gene_5969Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g8gene6438Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00940.1NO16G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00940 ID=NO16G00940|Name=NO16G00940|organism=Nannochloropsis oceanica|type=gene|length=745bp
ACTACAGATTCTCCCTAAGCAAGATGATTTTGTCGCACCCCGTTAGCCGT
TGTTGCCTGTCTCACGTACGCCGCCACCATCTCCTGCTGCTGCCACTACC
TCCTAGTAGCGCTATCACCCCAGCCTCGTTCACTCGCCCCTATTCCACCT
CATCCCCTCCACCGCGATCCCCTCGTCCCTTCCGCGTTCTGGGCCTGCAG
CAAGTCGCCATTGGCTCCCTGGACAAGGCCGGCCTCTCCAAGCTGTGGGG
GGAGGTTCTGGGGATCCCCACCACGGGCACATTCCGTAGCGACAAGGAGA
ACGTAGACGAGGACATCTTGCGTCTCGGTGCCCCCGGCAGTCCTTGGGAC
GTGGAGATTGACTTAATGCAGCCCATTGACCCGTCAAAATCCCCCAAGGT
ACACGTCCCCCCCCTTAATCACATAGGCTTGTGGGTCCACCCCTTGGCTG
CAGCTGTCGAGTACCTTACCGCGCAAGGCGTCCGATTCACGCCGGGCGGC
ATCCGAAAAGGTGCTGCGGGGCACGATGTGTGCTTTATCCATCCCAAGGG
GAGTCCGGCCATGCCTGTGTCGGGGGAGGGGGTCTTGATTGAGTTGGTGC
AGGCTCCACCAAAGGTGGTGGAGGCCTACGAAGAAGCGGCGGCAGCGGCG
AAGTAAAGACAGCAGCAGCGAGATGAAGAGAAACGATGCTATTATACATA
AAGTGAAACAGATTGTAAACAAAAGGAGAAGATGAGCTTTCCGAG
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protein sequence of NO16G00940.1

>NO16G00940.1-protein ID=NO16G00940.1-protein|Name=NO16G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MILSHPVSRCCLSHVRRHHLLLLPLPPSSAITPASFTRPYSTSSPPPRSP
RPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILR
LGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTA
QGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVE
AYEEAAAAAK*
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Synonyms
Publications