NO16G00940.1, NO16G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00940.1
Unique NameNO16G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length745
Alignment locationchr16:305075..305819 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:305075..305819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00940.1 vs.
Match: EWM23995.1 (lactoylglutathione lyase [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 4.700e-69
Identity = 138/208 (66.35%), Postives = 163/208 (78.37%), Query Frame = 0 
Query:    3 LSHPVSRCCLSHVRRH-HLLLLPLPPSSAITPASFTRPYSTSSPPPRSPRPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILRLGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTAQGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVEAYEEAAAAA 210
            LSHP +      ++ H H L    P +    P+   RP S+S+     PRPFRVLGLQQVAIG+LDK+G  +LWG+VLG+P TGT++S+ ENVDEDI R+GAP  PW VEIDLMQPIDP+K+PKVHVP LNHIGLWVHPL AAVEYL+ QGVRFTPGGIR+GAAGHDVCFIHPKG+   P+SGEGVLIELVQAPP+VV AYE A+ A+
Sbjct:    8 LSHPATVRYGRRLQPHGHTLQSESPGNPTSMPSC--RPLSSSA---LLPRPFRVLGLQQVAIGALDKSGPCRLWGDVLGVPMTGTYKSELENVDEDIFRVGAPDCPWAVEIDLMQPIDPAKAPKVHVPALNHIGLWVHPLTAAVEYLSKQGVRFTPGGIRRGAAGHDVCFIHPKGNEKSPLSGEGVLIELVQAPPEVVRAYESASVAS 210
The following BLAST results are available for this feature:
BLAST of NO16G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23995.14.700e-6966.35lactoylglutathione lyase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00940NO16G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00940.1NO16G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00940.1.cds1NO16G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00940.1 ID=NO16G00940.1|Name=NO16G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=745bp
ACTACAGATTCTCCCTAAGCAAGATGATTTTGTCGCACCCCGTTAGCCGT
TGTTGCCTGTCTCACGTACGCCGCCACCATCTCCTGCTGCTGCCACTACC
TCCTAGTAGCGCTATCACCCCAGCCTCGTTCACTCGCCCCTATTCCACCT
CATCCCCTCCACCGCGATCCCCTCGTCCCTTCCGCGTTCTGGGCCTGCAG
CAAGTCGCCATTGGCTCCCTGGACAAGGCCGGCCTCTCCAAGCTGTGGGG
GGAGGTTCTGGGGATCCCCACCACGGGCACATTCCGTAGCGACAAGGAGA
ACGTAGACGAGGACATCTTGCGTCTCGGTGCCCCCGGCAGTCCTTGGGAC
GTGGAGATTGACTTAATGCAGCCCATTGACCCGTCAAAATCCCCCAAGGT
ACACGTCCCCCCCCTTAATCACATAGGCTTGTGGGTCCACCCCTTGGCTG
CAGCTGTCGAGTACCTTACCGCGCAAGGCGTCCGATTCACGCCGGGCGGC
ATCCGAAAAGGTGCTGCGGGGCACGATGTGTGCTTTATCCATCCCAAGGG
GAGTCCGGCCATGCCTGTGTCGGGGGAGGGGGTCTTGATTGAGTTGGTGC
AGGCTCCACCAAAGGTGGTGGAGGCCTACGAAGAAGCGGCGGCAGCGGCG
AAGTAAAGACAGCAGCAGCGAGATGAAGAGAAACGATGCTATTATACATA
AAGTGAAACAGATTGTAAACAAAAGGAGAAGATGAGCTTTCCGAG
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protein sequence of NO16G00940.1

>NO16G00940.1-protein ID=NO16G00940.1-protein|Name=NO16G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MILSHPVSRCCLSHVRRHHLLLLPLPPSSAITPASFTRPYSTSSPPPRSP
RPFRVLGLQQVAIGSLDKAGLSKLWGEVLGIPTTGTFRSDKENVDEDILR
LGAPGSPWDVEIDLMQPIDPSKSPKVHVPPLNHIGLWVHPLAAAVEYLTA
QGVRFTPGGIRKGAAGHDVCFIHPKGSPAMPVSGEGVLIELVQAPPKVVE
AYEEAAAAAK*
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mRNA from alignment at chr16:305075..305819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00940.1 ID=NO16G00940.1|Name=NO16G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=745bp|location=Sequence derived from alignment at chr16:305075..305819- (Nannochloropsis oceanica)
ACTACAGATTCTCCCTAAGCAAGATGATTTTGTCGCACCCCGTTAGCCGT
TGTTGCCTGTCTCACGTACGCCGCCACCATCTCCTGCTGCTGCCACTACC
TCCTAGTAGCGCTATCACCCCAGCCTCGTTCACTCGCCCCTATTCCACCT
CATCCCCTCCACCGCGATCCCCTCGTCCCTTCCGCGTTCTGGGCCTGCAG
CAAGTCGCCATTGGCTCCCTGGACAAGGCCGGCCTCTCCAAGCTGTGGGG
GGAGGTTCTGGGGATCCCCACCACGGGCACATTCCGTAGCGACAAGGAGA
ACGTAGACGAGGACATCTTGCGTCTCGGTGCCCCCGGCAGTCCTTGGGAC
GTGGAGATTGACTTAATGCAGCCCATTGACCCGTCAAAATCCCCCAAGGT
ACACGTCCCCCCCCTTAATCACATAGGCTTGTGGGTCCACCCCTTGGCTG
CAGCTGTCGAGTACCTTACCGCGCAAGGCGTCCGATTCACGCCGGGCGGC
ATCCGAAAAGGTGCTGCGGGGCACGATGTGTGCTTTATCCATCCCAAGGG
GAGTCCGGCCATGCCTGTGTCGGGGGAGGGGGTCTTGATTGAGTTGGTGC
AGGCTCCACCAAAGGTGGTGGAGGCCTACGAAGAAGCGGCGGCAGCGGCG
AAGTAAAGACAGCAGCAGCGAGATGAAGAGAAACGATGCTATTATACATA
AAGTGAAACAGATTGTAAACAAAAGGAGAAGATGAGCTTTCCGAG
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Coding sequence (CDS) from alignment at chr16:305075..305819-

>NO16G00940.1 ID=NO16G00940.1|Name=NO16G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr16:305075..305819- (Nannochloropsis oceanica)
ATGATTTTGTCGCACCCCGTTAGCCGTTGTTGCCTGTCTCACGTACGCCG
CCACCATCTCCTGCTGCTGCCACTACCTCCTAGTAGCGCTATCACCCCAG
CCTCGTTCACTCGCCCCTATTCCACCTCATCCCCTCCACCGCGATCCCCT
CGTCCCTTCCGCGTTCTGGGCCTGCAGCAAGTCGCCATTGGCTCCCTGGA
CAAGGCCGGCCTCTCCAAGCTGTGGGGGGAGGTTCTGGGGATCCCCACCA
CGGGCACATTCCGTAGCGACAAGGAGAACGTAGACGAGGACATCTTGCGT
CTCGGTGCCCCCGGCAGTCCTTGGGACGTGGAGATTGACTTAATGCAGCC
CATTGACCCGTCAAAATCCCCCAAGGTACACGTCCCCCCCCTTAATCACA
TAGGCTTGTGGGTCCACCCCTTGGCTGCAGCTGTCGAGTACCTTACCGCG
CAAGGCGTCCGATTCACGCCGGGCGGCATCCGAAAAGGTGCTGCGGGGCA
CGATGTGTGCTTTATCCATCCCAAGGGGAGTCCGGCCATGCCTGTGTCGG
GGGAGGGGGTCTTGATTGAGTTGGTGCAGGCTCCACCAAAGGTGGTGGAG
GCCTACGAAGAAGCGGCGGCAGCGGCGAAGTAA
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Synonyms
Publications