NO16G00810, NO16G00810 (gene) Nannochloropsis oceanica

Overview
NameNO16G00810
Unique NameNO16G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr16:262504..263610 -

Link to JBrowse

Properties
Property NameValue
DescriptionConcanavalin A-like lectin/glucanase, subgroup
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:262504..263610 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246carbohydrate binding
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom
IPR000757Glyco_hydro_16
Homology
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BLAST of NO16G00810 vs. NCBI_GenBank
Match: EWM24047.1 (Concanavalin A-like lectin/glucanase, subgroup [Nannochloropsis gaditana])

HSP 1 Score: 408.7 bits (1049), Expect = 1.900e-110
Identity = 192/295 (65.08%), Postives = 228/295 (77.29%), Query Frame = 0 
Query:   37 QANNDACPVLRPPPLIYNSTAPFATDFTDKTQTLTFLHENYGRLYTNKVRACRRTDHLLYNTSLEGAGLSTDARGLRIVQDNIGGSVCDRNSEIATGHLLTKFYIQGGRIDLTARIGYGPEAGPGYQSEDSFSCFGLYIHDTVSQYGYRNEASMCVSSHDPTTVRMGVWNGSPADREEAKQVNVKRDLSQAFYTYSIEWGPTRVRFWLDDFLLWDMPGMSFCAGAKAAEVDKAMRNGGKGGARLPYEPMSIRIILRPLGVAYRGTSYMDVTRFAYSPLPLLKETERGSSDFFVSS 332
            +  N  CP LR  P +Y+S+  F+TDFT++ Q  +FL ENYGR+ T+ V ACRR+DHLLYNTS+ GAGL TD RGLRIV DN GG+VCD NSEIATGHLLT+FY+Q GRIDLTAR+GYGP+A P Y SEDSFSC GLY+H +VSQ+GYRNE SMCVSS DP+TVRMGVWNGSPAD+EEA+Q     DLSQAF+TYSIEW  +RVRFWLDD  LWDMPG  FCAG  AA++D  M      G RLPYEPMS+RIILRPLG+ Y+ T+YMD T+F+Y   PL++  E     F VS+
Sbjct:   36 EQENVLCPSLRSGPTLYSSSDIFSTDFTEQNQVQSFLSENYGRVNTDGVLACRRSDHLLYNTSMSGAGLETDVRGLRIVMDNNGGAVCDHNSEIATGHLLTRFYLQEGRIDLTARMGYGPDAAPRYHSEDSFSCLGLYVHQSVSQHGYRNEISMCVSSKDPSTVRMGVWNGSPADQEEARQAKTSMDLSQAFHTYSIEWTASRVRFWLDDLKLWDMPGQRFCAGVHAAKIDAGMSQ----GRRLPYEPMSVRIILRPLGIRYKATTYMDATKFSY--FPLVQAEEESEPVFHVSA 324
The following BLAST results are available for this feature:
BLAST of NO16G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24047.11.900e-11065.08Concanavalin A-like lectin/glucanase, subgroup [Na... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00810.1NO16G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593270gene_5956Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100280g5gene6421Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00810.1NO16G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00810 ID=NO16G00810|Name=NO16G00810|organism=Nannochloropsis oceanica|type=gene|length=1107bp
ATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTTCATCCT
TACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAACCGGCGG
TCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCCCCACCC
CTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGACAAGAC
ACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATACAAACA
AAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACGTCCTTG
GAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGTCCAAGA
CAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCACCGGCC
ATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTGACTGCG
CGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGAGGACAG
CTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAATATGGCT
ATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACCACTGTG
CGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGCGAAGCA
GGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATAGCATTG
AGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTATTGTGG
GATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGAGGTGGA
TAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTTACGAGC
CAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTACCGAGGA
ACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCCTCTACT
CAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCCCGGCGG
GGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGAGGAATG
ACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGGGACGTG
CATATAG
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protein sequence of NO16G00810.1

>NO16G00810.1-protein ID=NO16G00810.1-protein|Name=NO16G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MPGHVTAHARPQCHFILTPFVLISFFLFFPKPAVKSQANNDACPVLRPPP
LIYNSTAPFATDFTDKTQTLTFLHENYGRLYTNKVRACRRTDHLLYNTSL
EGAGLSTDARGLRIVQDNIGGSVCDRNSEIATGHLLTKFYIQGGRIDLTA
RIGYGPEAGPGYQSEDSFSCFGLYIHDTVSQYGYRNEASMCVSSHDPTTV
RMGVWNGSPADREEAKQVNVKRDLSQAFYTYSIEWGPTRVRFWLDDFLLW
DMPGMSFCAGAKAAEVDKAMRNGGKGGARLPYEPMSIRIILRPLGVAYRG
TSYMDVTRFAYSPLPLLKETERGSSDFFVSSPAGKKRRVEGWWWCVYGGM
TLVWWCMSMWVMWVGTCI*
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Synonyms
Publications