NO16G00810.1, NO16G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00810.1
Unique NameNO16G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr16:262504..263610 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:262504..263610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00810.1 vs.
Match: EWM24047.1 (Concanavalin A-like lectin/glucanase, subgroup [Nannochloropsis gaditana])

HSP 1 Score: 406.4 bits (1043), Expect = 9.600e-110
Identity = 202/328 (61.59%), Postives = 241/328 (73.48%), Query Frame = 0 
Query:   37 QANNDACPVLRPPPLIYNSTAPFATDFTDKTQTLTFLHENYGRLYTNKVRACRRTDHLLYNTSLEGAGLSTDARGLRIVQDNIGGSVCDRNSEIATGHLLTKFYIQGGRIDLTARIGYGPEAGPGYQSEDSFSCFGLYIHDTVSQYGYRNEASMCVSSHDPTTVRMGVWNGSPADREEAKQVNVKRDLSQAFYTYSIEWGPTRVRFWLDDFLLWDMPGMSFCAGAKAAEVDKAMRNGGKGGARLPYEPMSIRIILRPLGVAYRGTSYMDVTRFAYSPLPLLKETERGSSDFFVSSPAGKKRRVEGWWWCVYGGMTLVWWCMSMWVMWV 365
            +  N  CP LR  P +Y+S+  F+TDFT++ Q  +FL ENYGR+ T+ V ACRR+DHLLYNTS+ GAGL TD RGLRIV DN GG+VCD NSEIATGHLLT+FY+Q GRIDLTAR+GYGP+A P Y SEDSFSC GLY+H +VSQ+GYRNE SMCVSS DP+TVRMGVWNGSPAD+EEA+Q     DLSQAF+TYSIEW  +RVRFWLDD  LWDMPG  FCAG  AA++D  M      G RLPYEPMS+RIILRPLG+ Y+ T+YMD T+F+Y   PL++  E     F VS  AG     EG       G+  +W  +SM V+ V
Sbjct:   36 EQENVLCPSLRSGPTLYSSSDIFSTDFTEQNQVQSFLSENYGRVNTDGVLACRRSDHLLYNTSMSGAGLETDVRGLRIVMDNNGGAVCDHNSEIATGHLLTRFYLQEGRIDLTARMGYGPDAAPRYHSEDSFSCLGLYVHQSVSQHGYRNEISMCVSSKDPSTVRMGVWNGSPADQEEARQAKTSMDLSQAFHTYSIEWTASRVRFWLDDLKLWDMPGQRFCAGVHAAKIDAGMSQ----GRRLPYEPMSVRIILRPLGIRYKATTYMDATKFSY--FPLVQAEEESEPVFHVS--AGTSLTTEGLGKA--RGLGNLWQLLSMCVIIV 353
The following BLAST results are available for this feature:
BLAST of NO16G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24047.19.600e-11061.59Concanavalin A-like lectin/glucanase, subgroup [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00810NO16G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00810.1NO16G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00810.1.cds1NO16G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00810.1 ID=NO16G00810.1|Name=NO16G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTTCATCCT
TACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAACCGGCGG
TCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCCCCACCC
CTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGACAAGAC
ACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATACAAACA
AAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACGTCCTTG
GAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGTCCAAGA
CAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCACCGGCC
ATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTGACTGCG
CGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGAGGACAG
CTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAATATGGCT
ATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACCACTGTG
CGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGCGAAGCA
GGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATAGCATTG
AGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTATTGTGG
GATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGAGGTGGA
TAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTTACGAGC
CAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTACCGAGGA
ACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCCTCTACT
CAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCCCGGCGG
GGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGAGGAATG
ACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGGGACGTG
CATATAG
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protein sequence of NO16G00810.1

>NO16G00810.1-protein ID=NO16G00810.1-protein|Name=NO16G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MPGHVTAHARPQCHFILTPFVLISFFLFFPKPAVKSQANNDACPVLRPPP
LIYNSTAPFATDFTDKTQTLTFLHENYGRLYTNKVRACRRTDHLLYNTSL
EGAGLSTDARGLRIVQDNIGGSVCDRNSEIATGHLLTKFYIQGGRIDLTA
RIGYGPEAGPGYQSEDSFSCFGLYIHDTVSQYGYRNEASMCVSSHDPTTV
RMGVWNGSPADREEAKQVNVKRDLSQAFYTYSIEWGPTRVRFWLDDFLLW
DMPGMSFCAGAKAAEVDKAMRNGGKGGARLPYEPMSIRIILRPLGVAYRG
TSYMDVTRFAYSPLPLLKETERGSSDFFVSSPAGKKRRVEGWWWCVYGGM
TLVWWCMSMWVMWVGTCI*
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mRNA from alignment at chr16:262504..263610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00810.1 ID=NO16G00810.1|Name=NO16G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp|location=Sequence derived from alignment at chr16:262504..263610- (Nannochloropsis oceanica)
ATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTTCATCCT
TACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAACCGGCGG
TCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCCCCACCC
CTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGACAAGAC
ACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATACAAACA
AAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACGTCCTTG
GAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGTCCAAGA
CAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCACCGGCC
ATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTGACTGCG
CGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGAGGACAG
CTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAATATGGCT
ATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACCACTGTG
CGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGCGAAGCA
GGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATAGCATTG
AGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTATTGTGG
GATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGAGGTGGA
TAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTTACGAGC
CAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTACCGAGGA
ACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCCTCTACT
CAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCCCGGCGG
GGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGAGGAATG
ACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGGGACGTG
CATATAG
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Coding sequence (CDS) from alignment at chr16:262504..263610-

>NO16G00810.1 ID=NO16G00810.1|Name=NO16G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr16:262504..263610- (Nannochloropsis oceanica)
ATGCCAGGCCATGTCACTGCTCACGCCCGCCCGCAGTGTCATTTCATCCT
TACTCCCTTTGTTCTTATCTCATTCTTCCTCTTTTTCCCAAAACCGGCGG
TCAAATCCCAAGCTAATAACGACGCCTGCCCTGTCCTTCGCCCCCCACCC
CTCATCTACAACTCCACCGCACCCTTTGCCACGGACTTCACAGACAAGAC
ACAAACCCTGACATTCCTGCACGAGAACTATGGTCGACTTTATACAAACA
AAGTGCGGGCATGCCGACGCACAGACCACTTGCTCTACAACACGTCCTTG
GAAGGAGCCGGTCTCTCAACCGACGCGCGAGGGTTGCGCATCGTCCAAGA
CAACATCGGTGGGAGTGTCTGTGACCGCAATTCGGAAATTGCCACCGGCC
ATTTACTCACCAAATTTTACATACAAGGAGGTCGCATTGACTTGACTGCG
CGGATAGGCTATGGACCGGAGGCAGGGCCGGGGTACCAGAGCGAGGACAG
CTTTTCGTGCTTTGGCCTTTATATCCACGACACTGTCTCTCAATATGGCT
ATCGTAACGAAGCTTCAATGTGCGTGTCCTCTCATGACCCTACCACTGTG
CGGATGGGTGTGTGGAATGGCTCGCCTGCTGATCGGGAGGAAGCGAAGCA
GGTAAACGTAAAGAGAGACCTCTCGCAGGCTTTCTACACTTATAGCATTG
AGTGGGGGCCGACACGGGTGAGATTTTGGTTGGATGATTTTCTATTGTGG
GATATGCCAGGGATGAGCTTTTGTGCAGGTGCCAAGGCAGCGGAGGTGGA
TAAAGCCATGAGAAATGGAGGGAAAGGAGGTGCACGGTTACCTTACGAGC
CAATGTCAATTCGAATCATTTTGAGGCCTCTGGGTGTAGCGTACCGAGGA
ACTAGCTACATGGACGTGACCCGATTTGCGTACTCACCCTTGCCTCTACT
CAAAGAGACGGAGCGGGGAAGCTCGGACTTTTTTGTGTCGTCCCCGGCGG
GGAAGAAGAGGAGGGTGGAAGGGTGGTGGTGGTGTGTGTATGGAGGAATG
ACCTTGGTGTGGTGGTGCATGAGTATGTGGGTAATGTGGGTAGGGACGTG
CATATAG
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Synonyms
Publications