NO16G00680, NO16G00680 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G00680 vs. NCBI_GenBank
Match: EWM24066.1 (ribosomal rna large subunit methyltransferase i [Nannochloropsis gaditana]) HSP 1 Score: 488.8 bits (1257), Expect = 1.600e-134 Identity = 256/350 (73.14%), Postives = 276/350 (78.86%), Query Frame = 0 Query: 12 LTTSISMLLMVRRTFAFA-PLIQ--QSSRAWTASTTGLSGSKAATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEVEPSDRIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHDVVGDVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARERGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 LTTS+S+LL RR AFA P I SSR WT+ ++ATA A ETEVEP+ RIQRDYPHVVLRAGKARLFLEGNPLVYGEAVH+VVG VADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARE+GEA YA+SLED+V RRVSTAWATRQALGLPN ETTCFRLVNGEGD+LSGLAADVFDKVCVVSSSSLWCE+HK II GL+ LGP+GI TVWRRSEARL QDGF D EE ++P +DVKAEA+KEGA VW KEAG+KYKVYPELGQKTGFYCDQRQNRQMIQSLS+GKRVLDLFCYTGGFALN Sbjct: 12 LTTSLSLLLATRRAAAFALPAIPFFHSSRGWTSVIP--VRDQSATARA---------HKSSRKGGQYSVREGQEHRTSTRPRARETEVEPAARIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHEVVGHVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHAREKGEALYASSLEDIVARRVSTAWATRQALGLPNAETTCFRLVNGEGDKLSGLAADVFDKVCVVSSSSLWCERHKDFIIQGLEASLGPAGISTVWRRSEARLKQDGFVDPEEALRPAIDVKAEARKEGAYVWAKEAGLKYKVYPELGQKTGFYCDQRQNRQMIQSLSRGKRVLDLFCYTGGFALN 350
BLAST of NO16G00680 vs. NCBI_GenBank
Match: XP_005842209.1 (hypothetical protein GUITHDRAFT_131479 [Guillardia theta CCMP2712] >EKX55229.1 hypothetical protein GUITHDRAFT_131479 [Guillardia theta CCMP2712]) HSP 1 Score: 199.9 bits (507), Expect = 1.500e-47 Identity = 115/273 (42.12%), Postives = 159/273 (58.24%), Query Frame = 0 Query: 109 VVLRAGKARLFLEGNPLVYGEAVHDVVGDVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARERGEASYAA--SLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFE--------------DKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGF----ALNGKT 362 VVL+ GK++LF +GNP+V+G AV +G L+G G YNS SMYRVR+LW G++ ++ +++ +R++ A A R AL LP++ET +RL+NGEGDRLSG+A DV+ V+SSS+ W E HK I+ + V+ P + VWR+S RL QDGF+ +E+ K + A Q+ S + E G+K+ V P+LGQKTG Y DQR NR ++ L KGK VLD FCY+GGF ALNG T Sbjct: 99 VVLQPGKSKLFYDGNPVVFGGAV------------------QGKLVGWGLYNSDSMYRVRMLWLESMDGKSDDEKDFTMFNIIKKRLTNAAAIRSALSLPDEETNAYRLINGEGDRLSGVAIDVYSNWVVISSSARWVEIHKDVIMEAVKAVV-PVTSEVVWRQSIDRLRQDGFDIPTRASRSNADEELQEEDLDKDEISEPAGKQESAESTIISEYGVKFVVSPKLGQKTGHYLDQRDNRYVLGKLCKGKSVLDTFCYSGGFSLHAALNGAT 352
BLAST of NO16G00680 vs. NCBI_GenBank
Match: KOO35971.1 (ribosomal RNA large subunit methyltransferase i-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 197.2 bits (500), Expect = 9.500e-47 Identity = 113/275 (41.09%), Postives = 155/275 (56.36%), Query Frame = 0 Query: 109 VVLRAGKARLFLE-GNPLVYGEAVHDVVGDVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARERGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGAS------------------------VWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 V L+AGKARLF G+PLV+ AV V+GD G V+VVD + L+G G +N SMYRVRLL E ++ L +++ R+ A R AL LP+ ETT +RL+N EGDRLSGL DVF V +S++W E+ ++ L + P + VWRRS+ RL QDG+E V+ + ++ + V + E+G+KY V P LGQK+GFYCDQR NR+ + L + KRVLDLFCY+GGF+L+ Sbjct: 35 VRLQAGKARLFKNAGHPLVFSGAVDKVLGDPEPGAIVDVVDGKDGLVGWGVFNPHSMYRVRLLATPEEPALIAH-RDLRKLISHRLEAALKLRAALSLPSPETTAYRLINSEGDRLSGLTVDVFGGTAVAVTSAMWLEQRSDMVVECLRAL--PGITEVVWRRSDGRLQQDGWEVPNAKVEEVEEHQSLTDDSPTAXXXXXXXXXXXXXXXXXXXXXXLPVLIYESGVKYLVAPVLGQKSGFYCDQRDNRRQLAELCRDKRVLDLFCYSGGFSLS 306
BLAST of NO16G00680 vs. NCBI_GenBank
Match: XP_017242195.1 (PREDICTED: ribosomal RNA large subunit methyltransferase I [Daucus carota subsp. sativus]) HSP 1 Score: 195.3 bits (495), Expect = 3.600e-46 Identity = 117/256 (45.70%), Postives = 155/256 (60.55%), Query Frame = 0 Query: 109 VVLRAGKARLFLEGNPLVYGEAVHDVVG--DVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARER-GEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAI---IAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 VVL+ GK ++F EG+P+VY AV ++G GD V V D IG G YNS SM+ VR++ E G+ A ++E +V RR+ A R+ LGLP+K T +RLVN EGDRLSGL D+F V V++SS+ W EK+K I I LD + WRRS L ++G + + V+V+ A E SV V E GI Y + E GQKTGFY DQR+NRQ I+++S+G+RVLD+ CYTGGFALN Sbjct: 37 VVLKKGKTQIFREGSPMVYSGAVDRIIGRPPPKTGDIVLVADGTEKPIGWGLYNSVSMFCVRIMQLEEEAIGDPLCALNMEKLVERRIDAAVKLRKNLGLPSKNTNTYRLVNSEGDRLSGLIIDIFGDVAVIASSAAWVEKYKPQIEGCIGRLDAI-----TNICWRRSTEILKEEGID-----LSNLVEVQPSASTE--SVKVVENGISYVISLE-GQKTGFYADQRENRQFIRNISEGQRVLDMCCYTGGFALN 279
BLAST of NO16G00680 vs. NCBI_GenBank
Match: XP_009033531.1 (hypothetical protein AURANDRAFT_2373, partial [Aureococcus anophagefferens] >EGB11701.1 hypothetical protein AURANDRAFT_2373, partial [Aureococcus anophagefferens]) HSP 1 Score: 194.9 bits (494), Expect = 4.700e-46 Identity = 115/266 (43.23%), Postives = 148/266 (55.64%), Query Frame = 0 Query: 109 VVLRAGKARLFLEGNPLVYGEAVHDVVGDVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWH--ARERGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGL----DTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN----GKTEEK 365 V L GK++LF +GNPL++ AV GD GD V+VVD +G G YN SMYRVRLL A E EA A+++ + + A + R+AL LP +T FR VN EGD LSGL D F V V S++W E + + A L + + G S + +WRR+EARL QDG+ D +A+ G KE G+ Y+V GQKTGFYCDQR NR + L GK VLDL+CY+GGFALN G TE + Sbjct: 1 VTLGRGKSKLFRKGNPLIFAGAVSSTAGDPQRGDVVDVVDGANQNVGWGTYNPDSMYRVRLLGRGGAAETNEARVGAAVKAL----LGAAASRRRALDLPRADTDVFRFVNSEGDGLSGLTVDAFGDVLVCQISAVWLESRRAVVEAALREAYEGLTGISDARVLWRRAEARLRQDGW-----------DGEADEMASGDRFAAKEGGLAYEV-DVFGQKTGFYCDQRDNRAFLGPLCAGKSVLDLYCYSGGFALNAAKHGATEAR 250
BLAST of NO16G00680 vs. NCBI_GenBank
Match: XP_001422128.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABP00445.1 predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 194.1 bits (492), Expect = 8.100e-46 Identity = 108/254 (42.52%), Postives = 153/254 (60.24%), Query Frame = 0 Query: 109 VVLRAGKARLFLEGNPLVYGEAVHDVVGDVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARERGEASYAASLEDMVTRRVSTAWATRQALGL-PNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGA---SVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 VV+ GKA +FL+GNP+VY A+ V G+ GD+V+V DH + I G YN S Y VR L A ERG + +V +R+ A+ R+ LGL N+ TTC+RL+N EGD++SGL ADV+ ++ V SS++ W E+ + I+ VLG + K VWRR E +G + E + + D A+ A V V E G++Y + G KTGFY DQR NR++++ +++GKRVLD+ CYTGGFALN Sbjct: 84 VVVARGKANMFLDGNPIVYAGAIERVEGEARTGDWVQVTDHALSPICYGFYNETSSYSVRALSQAWERG----CEDGDGVVAQRIREAYELRRDLGLVGNERTTCYRLLNSEGDKISGLNADVYGEIVVASSTAAWVEQRRDVILRAFADVLG-ANTKVVWRRDEKMYEVEGTPWEGENLIDYYDAATGAKVGEAVPSDVKVLEDGVQYAIDIAGGHKTGFYVDQRDNRKVMREIARGKRVLDVCCYTGGFALN 332
BLAST of NO16G00680 vs. NCBI_GenBank
Match: XP_010693390.1 (PREDICTED: uncharacterized protein LOC104906348 isoform X1 [Beta vulgaris subsp. vulgaris] >KMS99116.1 hypothetical protein BVRB_2g047590 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 190.3 bits (482), Expect = 1.200e-44 Identity = 114/253 (45.06%), Postives = 154/253 (60.87%), Query Frame = 0 Query: 109 VVLRAGKARLFLEGNPLVYGEAVHDVVG--DVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARER-GEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 VVL+ GK +LF G+P+VY AV ++G GD V V D IG G YNS SM+ VRL+ E + + A ++E ++ +R++ A R+ LG+P+ T FRLVN EGDRLSGL DVF V VV+SS+ W E++K I + ++ V G S I WR S L ++G + + +K A V V+E+GIKY V E GQKTGFY DQR+NRQ I +++KGKRVLD+ CY+GGFALN Sbjct: 40 VVLKKGKTQLFRYGSPMVYSGAVDRIIGRPPPKTGDIVLVADGAEKSIGWGLYNSVSMFCVRLMQLEEEALRDPTCAFNMESLLEQRINAATDLRRHLGIPSTNTNAFRLVNSEGDRLSGLIVDVFGDVAVVASSAAWVERYKLEIESCINKVDGISHIN--WRPSIDILKEEGLD--------LLQLKHTPASPLAQVEVRESGIKYAVSLE-GQKTGFYADQRENRQFISTIAKGKRVLDVCCYSGGFALN 281
BLAST of NO16G00680 vs. NCBI_GenBank
Match: ESQ29843.1 (hypothetical protein EUTSA_v10011478mg [Eutrema salsugineum]) HSP 1 Score: 189.9 bits (481), Expect = 1.500e-44 Identity = 117/268 (43.66%), Postives = 157/268 (58.58%), Query Frame = 0 Query: 99 SDRIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHDVVG--DVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRL--LWHARERGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGAS----VWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 S ++ VVL+ GK +LF +G+P+VY AV ++G GD V V D N IG G YNS SM+ VRL L H R + A ++E +V R++ A R +LGLP+ T +RLVN EGDRLSGL DVF + VV+SS+ W EK++ + A L +V G + I WR S L +DGF D+ + Q + ++ + V E GI Y + E GQKTGFY DQR+NR +I ++S GKRVLDL CY+GGFALN Sbjct: 34 SSKVNSGVAKVVLKKGKTQLFKDGSPMVYSGAVDRIIGKPPPQTGDVVIVADGSENPIGWGLYNSVSMFCVRLMQLQHESTR-DPCCALNIEKLVEARITQALELRNSLGLPSATTNAYRLVNSEGDRLSGLIVDVFGDIAVVASSAAWLEKYRSQVEACLRSVHGINHIN--WRPSLDVLKEDGF-----------DISSLKQTQSSNLPQRLMVVENGISYAISLE-GQKTGFYTDQRENRHLISTISAGKRVLDLCCYSGGFALN 286
BLAST of NO16G00680 vs. NCBI_GenBank
Match: XP_006392557.2 (uncharacterized protein LOC18010863 [Eutrema salsugineum]) HSP 1 Score: 189.9 bits (481), Expect = 1.500e-44 Identity = 117/268 (43.66%), Postives = 157/268 (58.58%), Query Frame = 0 Query: 99 SDRIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHDVVG--DVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRL--LWHARERGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGAS----VWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 S ++ VVL+ GK +LF +G+P+VY AV ++G GD V V D N IG G YNS SM+ VRL L H R + A ++E +V R++ A R +LGLP+ T +RLVN EGDRLSGL DVF + VV+SS+ W EK++ + A L +V G + I WR S L +DGF D+ + Q + ++ + V E GI Y + E GQKTGFY DQR+NR +I ++S GKRVLDL CY+GGFALN Sbjct: 48 SSKVNSGVAKVVLKKGKTQLFKDGSPMVYSGAVDRIIGKPPPQTGDVVIVADGSENPIGWGLYNSVSMFCVRLMQLQHESTR-DPCCALNIEKLVEARITQALELRNSLGLPSATTNAYRLVNSEGDRLSGLIVDVFGDIAVVASSAAWLEKYRSQVEACLRSVHGINHIN--WRPSLDVLKEDGF-----------DISSLKQTQSSNLPQRLMVVENGISYAISLE-GQKTGFYTDQRENRHLISTISAGKRVLDLCCYSGGFALN 300
BLAST of NO16G00680 vs. NCBI_GenBank
Match: OAY83069.1 (Ribosomal RNA large subunit methyltransferase I [Ananas comosus]) HSP 1 Score: 189.5 bits (480), Expect = 2.000e-44 Identity = 112/253 (44.27%), Postives = 152/253 (60.08%), Query Frame = 0 Query: 109 VVLRAGKARLFLEGNPLVYGEAVHDVVG--DVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARE-RGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALN 359 VVL+ GKA++F +GNP+VY AV ++G GD V V D G IG G YNS SM+ VRL+ E + + S A ++E ++ R+ A RQ+LGLP+ +T +RL+N EGDRLSGL D+F V V++SS+ W EK++K I + V + IK WR S L ++G + E+ + V V E+GI Y V + GQKTGFY DQR+NR +I LSK +RVLDL CY+GGFALN Sbjct: 59 VVLKKGKAQIFRDGNPMVYSGAVDRIIGRPPPRTGDVVLVADGSGKPIGWGLYNSVSMFCVRLMQLEEEAKRDPSCALNMEKLLETRIFAAIDLRQSLGLPSADTNAYRLINSEGDRLSGLIVDIFSDVAVIASSAAWVEKYRKEIEFLVGNVSAVNHIK--WRSSTDILKEEGLDLSEQN-------DSSPSPCSGKVKVVESGICYSVSLD-GQKTGFYADQRENRHLISLLSKDRRVLDLCCYSGGFALN 301 The following BLAST results are available for this feature:
BLAST of NO16G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G00680 ID=NO16G00680|Name=NO16G00680|organism=Nannochloropsis oceanica|type=gene|length=2079bpback to top protein sequence of NO16G00680.1 >NO16G00680.1-protein ID=NO16G00680.1-protein|Name=NO16G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bpback to top protein sequence of NO16G00680.2 >NO16G00680.2-protein ID=NO16G00680.2-protein|Name=NO16G00680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=563bpback to top protein sequence of NO16G00680.3 >NO16G00680.3-protein ID=NO16G00680.3-protein|Name=NO16G00680.3|organism=Nannochloropsis oceanica|type=polypeptide|length=395bpback to top Synonyms
Publications
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