NO16G00680.1, NO16G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00680.1
Unique NameNO16G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1740
Alignment locationchr16:235260..237338 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:235260..237338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00680.1 vs.
Match: EWM24066.1 (ribosomal rna large subunit methyltransferase i [Nannochloropsis gaditana])

HSP 1 Score: 777.3 bits (2006), Expect = 2.900e-221
Identity = 405/511 (79.26%), Postives = 438/511 (85.71%), Query Frame = 0 
Query:   12 LTTSISMLLMVRRTFAFA-PLIQ--QSSRAWTASTTGLSGSKAATATAHSSSRVGYGGGGGGGGSDYRGGGGGGQRTSSRPPPRETEVEPSDRIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHDVVGDVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARERGEASYAASLEDMVTRRVSTAWATRQALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKAIIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKEGASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFCYTGGFALNAAKGGAKEVVGVDSSALAVETAIENAAANGLEGKTSFIKSDVLVYARGLGEGGERSFDIIIADPPKLAPTRRDLPRALHKYLKINRAAFRMVKSGGLVLTHTCSAALTQEPEEFRKMVNQAANDVGRSITILQTSHAAPCHVQSAVYGESNYLTAMLVAVF 520
            LTTS+S+LL  RR  AFA P I    SSR WT+        ++ATA AH SSR G           Y    G   RTS+RP  RETEVEP+ RIQRDYPHVVLRAGKARLFLEGNPLVYGEAVH+VVG VADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHARE+GEA YA+SLED+V RRVSTAWATRQALGLPN ETTCFRLVNGEGD+LSGLAADVFDKVCVVSSSSLWCE+HK  II GL+  LGP+GI TVWRRSEARL QDGF D EE ++P +DVKAEA+KEGA VW KEAG+KYKVYPELGQKTGFYCDQRQNRQMIQSLS+GKRVLDLFCYTGGFALNAA+GGA+E +GVDSSALA+ETA+ENA AN LEG  +F KSDVLVYAR LG+ GE++FDI+IADPPKLAPTRRDLPRALHKYLKINRA FRMV SGGLVLTHTCSAALTQ+PEEFRKMV QAA+DVGRSITILQ SHAAPCHVQS VYGESNYLTAMLVAVF
Sbjct:   12 LTTSLSLLLATRRAAAFALPAIPFFHSSRGWTSVIP--VRDQSATARAHKSSRKG---------GQYSVREGQEHRTSTRPRARETEVEPAARIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHEVVGHVADGDFVEVVDHRGNLIGKGCYNSQSMYRVRLLWHAREKGEALYASSLEDIVARRVSTAWATRQALGLPNAETTCFRLVNGEGDKLSGLAADVFDKVCVVSSSSLWCERHKDFIIQGLEASLGPAGISTVWRRSEARLKQDGFVDPEEALRPAIDVKAEARKEGAYVWAKEAGLKYKVYPELGQKTGFYCDQRQNRQMIQSLSRGKRVLDLFCYTGGFALNAARGGAREAIGVDSSALAIETAMENARANDLEGHATFCKSDVLVYARDLGKTGEKAFDIVIADPPKLAPTRRDLPRALHKYLKINRAVFRMVASGGLVLTHTCSAALTQDPEEFRKMVTQAAHDVGRSITILQVSHAAPCHVQSPVYGESNYLTAMLVAVF 511
The following BLAST results are available for this feature:
BLAST of NO16G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24066.12.900e-22179.26ribosomal rna large subunit methyltransferase i [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00680NO16G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00680.1NO16G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00680.1.cds1NO16G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00680.1.cds2NO16G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00680.1.cds3NO16G00680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00680.1 ID=NO16G00680.1|Name=NO16G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp
CTGGCCCACACGTACTCAACGCTCTTTCATGCATACTCGATAGCTATGAA
GCATCGCGAGACTTCCTGCGTCATGCTCTTGACCACGTCCATTTCAATGC
TGCTCATGGTCCGTCGGACTTTTGCCTTTGCGCCCTTGATCCAACAATCC
TCACGGGCTTGGACGGCGTCTACGACTGGCCTTTCCGGGAGTAAAGCGGC
CACAGCCACCGCCCACAGCAGCAGCCGCGTTGGTTATGGTGGTGGAGGAG
GTGGAGGAGGCAGCGATTATCGTGGTGGCGGTGGTGGGGGACAGCGCACG
TCTTCCCGTCCGCCTCCCCGTGAGACTGAGGTCGAGCCCTCCGACAGGAT
CCAGAGGGATTATCCGCATGTCGTGCTACGGGCAGGAAAGGCTCGCTTGT
TTTTGGAGGGCAATCCGTTGGTATACGGAGAAGCCGTCCATGATGTGGTA
GGAGACGTGGCGGATGGTGATTTTGTGGAGGTGGTGGACCATAGAGGCAA
TTTGATTGGCAAGGGGTGCTACAATTCCCAGAGCATGTACCGTGTCCGTC
TCCTGTGGCATGCCCGCGAGCGAGGGGAGGCATCATATGCGGCTTCTTTG
GAGGATATGGTCACACGGCGGGTGAGCACGGCATGGGCAACGAGGCAGGC
GTTGGGGCTGCCGAACAAGGAGACGACGTGCTTTCGGTTGGTGAATGGGG
AGGGAGATCGATTGAGTGGGCTGGCCGCCGATGTCTTTGACAAGGTCTGT
GTCGTGTCCAGCAGTTCATTGTGGTGCGAGAAGCATAAAAAGGCGATTAT
CGCGGGATTGGACACTGTGCTGGGCCCGTCGGGGATCAAGACGGTTTGGC
GTCGGAGCGAGGCGAGATTGTCGCAGGATGGGTTCGAGGACAAGGAGGAG
GGCGTGAAGCCCTTCGTTGACGTCAAGGCGGAAGCACAAAAGGAGGGGGC
CTCTGTGTGGGTGAAGGAGGCGGGTATCAAATACAAGGTCTACCCAGAGC
TGGGGCAAAAGACGGGATTTTACTGTGATCAGCGTCAGAACCGGCAGATG
ATCCAGAGTCTGTCCAAGGGAAAGCGGGTGCTGGATCTCTTTTGTTATAC
GGGTGGCTTTGCATTGAATGCGGCCAAAGGCGGGGCCAAGGAAGTTGTCG
GTGTCGACAGCTCCGCACTCGCCGTGGAGACTGCGATTGAGAACGCGGCG
GCCAATGGATTAGAAGGCAAGACCTCTTTTATCAAATCAGACGTGCTGGT
CTATGCCCGCGGGCTAGGCGAAGGAGGCGAGCGTTCGTTTGACATTATAA
TTGCGGATCCCCCCAAGCTGGCACCGACTCGACGGGACTTGCCAAGGGCA
TTGCACAAATACCTGAAGATCAATCGGGCGGCGTTCCGGATGGTGAAGAG
TGGGGGGTTAGTGCTGACGCACACCTGCTCGGCGGCCTTAACGCAGGAAC
CGGAAGAGTTCAGGAAGATGGTCAATCAGGCGGCCAATGATGTTGGCCGC
TCTATCACCATCCTCCAAACCAGCCATGCCGCCCCTTGCCACGTGCAATC
GGCTGTGTACGGAGAGTCCAACTATCTGACAGCCATGCTTGTTGCCGTAT
TCTGAACCGAGAAAAAGTCAAAGCTTAAAGAAAAACGGACACAAAGAAAG
CAAATGTATTATTCAAGGCGCCGGCGTTTATGATCTTGATAAAGGAAGCA
CCAAGATCAAATAAGAAAGAATCTATGTTGCTTATGCTGA
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protein sequence of NO16G00680.1

>NO16G00680.1-protein ID=NO16G00680.1-protein|Name=NO16G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MKHRETSCVMLLTTSISMLLMVRRTFAFAPLIQQSSRAWTASTTGLSGSK
AATATAHSSSRVGYGGGGGGGGSDYRGGGGGGQRTSSRPPPRETEVEPSD
RIQRDYPHVVLRAGKARLFLEGNPLVYGEAVHDVVGDVADGDFVEVVDHR
GNLIGKGCYNSQSMYRVRLLWHARERGEASYAASLEDMVTRRVSTAWATR
QALGLPNKETTCFRLVNGEGDRLSGLAADVFDKVCVVSSSSLWCEKHKKA
IIAGLDTVLGPSGIKTVWRRSEARLSQDGFEDKEEGVKPFVDVKAEAQKE
GASVWVKEAGIKYKVYPELGQKTGFYCDQRQNRQMIQSLSKGKRVLDLFC
YTGGFALNAAKGGAKEVVGVDSSALAVETAIENAAANGLEGKTSFIKSDV
LVYARGLGEGGERSFDIIIADPPKLAPTRRDLPRALHKYLKINRAAFRMV
KSGGLVLTHTCSAALTQEPEEFRKMVNQAANDVGRSITILQTSHAAPCHV
QSAVYGESNYLTAMLVAVF*
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mRNA from alignment at chr16:235260..237338+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00680.1 ID=NO16G00680.1|Name=NO16G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at chr16:235260..237338+ (Nannochloropsis oceanica)
CTGGCCCACACGTACTCAACGCTCTTTCATGCATACTCGATAGCTATGAA
GCATCGCGAGACTTCCTGCGTCATGCTCTTGACCACGTCCATTTCAATGC
TGCTCATGGTCCGTCGGACTTTTGCCTTTGCGCCCTTGATCCAACAATCC
TCACGGGCTTGGACGGCGTCTACGACTGGCCTTTCCGGGAGTAAAGCGGC
CACAGCCACCGCCCACAGCAGCAGCCGCGTTGGTTATGGTGGTGGAGGAG
GTGGAGGAGGCAGCGATTATCGTGGTGGCGGTGGTGGGGGACAGCGCACG
TCTTCCCGTCCGCCTCCCCGTGAGACTGAGGTCGAGCCCTCCGACAGGAT
CCAGAGGGATTATCCGCATGTCGTGCTACGGGCAGGAAAGGCTCGCTTGT
TTTTGGAGGGCAATCCGTTGGTATACGGAGAAGCCGTCCATGATGTGGTA
GGAGACGTGGCGGATGGTGATTTTGTGGAGGTGGTGGACCATAGAGGCAA
TTTGATTGGCAAGGGGTGCTACAATTCCCAGAGCATGTACCGTGTCCGTC
TCCTGTGGCATGCCCGCGAGCGAGGGGAGGCATCATATGCGGCTTCTTTG
GAGGATATGGTCACACGGCGGGTGAGCACGGCATGGGCAACGAGGCAGGC
GTTGGGGCTGCCGAACAAGGAGACGACGTGCTTTCGGTTGGTGAATGGGG
AGGGAGATCGATTGAGTGGGCTGGCCGCCGATGTCTTTGACAAGGTCTGT
GTCGTGTCCAGCAGTTCATTGTGGTGCGAGAAGCATAAAAAGGCGATTAT
CGCGGGATTGGACACTGTGCTGGGCCCGTCGGGGATCAAGACGGTTTGGC
GTCGGAGCGAGGCGAGATTGTCGCAGGATGGGTTCGAGGACAAGGAGGAG
GGCGTGAAGCCCTTCGTTGACGTCAAGGCGGAAGCACAAAAGGAGGGGGC
CTCTGTGTGGGTGAAGGAGGCGGGTATCAAATACAAGGTCTACCCAGAGC
TGGGGCAAAAGACGGGATTTTACTGTGATCAGCGTCAGAACCGGCAGATG
ATCCAGAGTCTGTCCAAGGGAAAGCGGGTGCTGGATCTCTTTTGTTATAC
GGGTGGCTTTGCATTGAATGGTAAGACGGAAGAGAAGAGAGGGAGGAAGG
TTGAGTGTGTGAAGAACGCCATCAATTTTTGCTTTTTGTCTGTTTTCATG
TTGATACCTAGAATTGCTGCAGGGGGTTAGTGGACTTTCACGAGACCGCA
TCAGCATTCTCCCCTTTTAGGTTTTCGTACCCCTGTCCCCTTTTTCCTCA
TTATCCCCCCACAACTCTACTCTGTTACAGCGGCCAAAGGCGGGGCCAAG
GAAGTTGTCGGTGTCGACAGCTCCGCACTCGCCGTGGAGACTGCGATTGA
GAACGCGGCGGCCAATGGATTAGAAGGCAAGACCTCTTTTATCAAATCAG
ACGTGCTGGTCTATGCCCGCGGGCTAGGCGAAGGAGGCGAGCGTTCGTTT
GACATTATAATTGCGGATCCCCCCAAGCTGGCACCGACTCGACGGGACTT
GCCAAGGGCATTGCACAAATACCTGAAGATCAATCGGGCGGCGTTCCGGA
TGGTGAAGAGTGGGGGGTTAGTGCTGACGCACACCTGCTCGGCGGCCTTA
ACGCAGGAACCGGAAGAGTTCAGGAAGATGGTCAATCAGGCGGTAAGTTT
GGGTCGTAAGAACATAGGAGAGGAGAAATTATATTTAGAATGGGCGGAAT
TGAAAATTAGATTTCATCACATTAGCTTACCTATCTATTGCTTCCCTTCG
TCAACTAATTTGTCCACACAGGCCAATGATGTTGGCCGCTCTATCACCAT
CCTCCAAACCAGCCATGCCGCCCCTTGCCACGTGCAATCGGCTGTGTACG
GAGAGTCCAACTATCTGACAGCCATGCTTGTTGCCGTATTCTGAACCGAG
AAAAAGTCAAAGCTTAAAGAAAAACGGACACAAAGAAAGCAAATGTATTA
TTCAAGGCGCCGGCGTTTATGATCTTGATAAAGGAAGCACCAAGATCAAA
TAAGAAAGAATCTATGTTGCTTATGCTGA
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Coding sequence (CDS) from alignment at chr16:235260..237338+

>NO16G00680.1 ID=NO16G00680.1|Name=NO16G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr16:235260..237338+ (Nannochloropsis oceanica)
ATGAAGCATCGCGAGACTTCCTGCGTCATGCTCTTGACCACGTCCATTTC
AATGCTGCTCATGGTCCGTCGGACTTTTGCCTTTGCGCCCTTGATCCAAC
AATCCTCACGGGCTTGGACGGCGTCTACGACTGGCCTTTCCGGGAGTAAA
GCGGCCACAGCCACCGCCCACAGCAGCAGCCGCGTTGGTTATGGTGGTGG
AGGAGGTGGAGGAGGCAGCGATTATCGTGGTGGCGGTGGTGGGGGACAGC
GCACGTCTTCCCGTCCGCCTCCCCGTGAGACTGAGGTCGAGCCCTCCGAC
AGGATCCAGAGGGATTATCCGCATGTCGTGCTACGGGCAGGAAAGGCTCG
CTTGTTTTTGGAGGGCAATCCGTTGGTATACGGAGAAGCCGTCCATGATG
TGGTAGGAGACGTGGCGGATGGTGATTTTGTGGAGGTGGTGGACCATAGA
GGCAATTTGATTGGCAAGGGGTGCTACAATTCCCAGAGCATGTACCGTGT
CCGTCTCCTGTGGCATGCCCGCGAGCGAGGGGAGGCATCATATGCGGCTT
CTTTGGAGGATATGGTCACACGGCGGGTGAGCACGGCATGGGCAACGAGG
CAGGCGTTGGGGCTGCCGAACAAGGAGACGACGTGCTTTCGGTTGGTGAA
TGGGGAGGGAGATCGATTGAGTGGGCTGGCCGCCGATGTCTTTGACAAGG
TCTGTGTCGTGTCCAGCAGTTCATTGTGGTGCGAGAAGCATAAAAAGGCG
ATTATCGCGGGATTGGACACTGTGCTGGGCCCGTCGGGGATCAAGACGGT
TTGGCGTCGGAGCGAGGCGAGATTGTCGCAGGATGGGTTCGAGGACAAGG
AGGAGGGCGTGAAGCCCTTCGTTGACGTCAAGGCGGAAGCACAAAAGGAG
GGGGCCTCTGTGTGGGTGAAGGAGGCGGGTATCAAATACAAGGTCTACCC
AGAGCTGGGGCAAAAGACGGGATTTTACTGTGATCAGCGTCAGAACCGGC
AGATGATCCAGAGTCTGTCCAAGGGAAAGCGGGTGCTGGATCTCTTTTGT
TATACGGGTGGCTTTGCATTGAATGCGGCCAAAGGCGGGGCCAAGGAAGT
TGTCGGTGTCGACAGCTCCGCACTCGCCGTGGAGACTGCGATTGAGAACG
CGGCGGCCAATGGATTAGAAGGCAAGACCTCTTTTATCAAATCAGACGTG
CTGGTCTATGCCCGCGGGCTAGGCGAAGGAGGCGAGCGTTCGTTTGACAT
TATAATTGCGGATCCCCCCAAGCTGGCACCGACTCGACGGGACTTGCCAA
GGGCATTGCACAAATACCTGAAGATCAATCGGGCGGCGTTCCGGATGGTG
AAGAGTGGGGGGTTAGTGCTGACGCACACCTGCTCGGCGGCCTTAACGCA
GGAACCGGAAGAGTTCAGGAAGATGGTCAATCAGGCGGCCAATGATGTTG
GCCGCTCTATCACCATCCTCCAAACCAGCCATGCCGCCCCTTGCCACGTG
CAATCGGCTGTGTACGGAGAGTCCAACTATCTGACAGCCATGCTTGTTGC
CGTATTCTGA
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Synonyms
Publications