NO16G00640, NO16G00640 (gene) Nannochloropsis oceanica

Overview
NameNO16G00640
Unique NameNO16G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2576
Alignment locationchr16:224815..227390 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA-dependent RNA polymerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:224815..227390 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003968RNA-directed 5'-3' RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR007855RNA-dep_RNA_pol_euk-typ
Homology
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BLAST of NO16G00640 vs. NCBI_GenBank
Match: EWM24076.1 (Rna-dependent RNA polymerase [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 4.900e-65
Identity = 169/399 (42.36%), Postives = 218/399 (54.64%), Query Frame = 0 
Query:  142 CPGSEMLTVVGPFHFNAESVGLQVDAAVMKRCLESCMAHGKAHDIVASASDWWLRHADLRGACSSNCLILGEIAARALDSAKTGLLWSLPTVLKPAHRPSYLDRSGWSSSSAFSASLSSYHRVLSYSEVDTLLGRIHARVAPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFISPADTLRLDSDLRVEGSAAFLEQAQSWLKAYRQSYARRMGRXXXXXXXXXXXXXXXXXXXG--EYQALKSEVLAPFKQAFLATARASGGDK----MTSA--NKRGDEEEGIGAGGEERRPLQLLADNTLPTKAEATVTVGDKNNENSRVPXXXXXXXXXXXXXXXXGNINSRFDRRRLAVASAIYEVTYMSGSTLSFVWDTVMHELNHVKKTALARRE 533
            CPG+E+LT +GPF  + E+VG ++DA VM+RCLESC+A  KA  I+ASASDWW+RHAD+RGA S +C ILGEIA  A++SAKTG LWSLP VL+P H P YL+R  +S+  A S S     R +S    D+ LGR+++RV PL                                     ++P D ++LD DLR+EGSAAF E AQSWLKAYRQS ARR  R                      +YQA K+++L PF Q  L    A+  DK     T A  ++RG            R+PLQ LA N              +++++S++                  N N   + RRLA+ASAIYEVTYM GS L+FVWD VM ELN +KK ALARR+
Sbjct:   65 CPGAELLTQIGPFRLDPETVGHKIDAKVMRRCLESCVAQAKASQILASASDWWIRHADIRGALSRDCRILGEIAVGAVNSAKTGELWSLPRVLRPQHYPPYLNR--YSAVDATSPS-----RPIS---ADSFLGRVYSRVLPLFLETSRQKSASLRSDDVGNT-----------------VAPLDPIKLDVDLRIEGSAAFFELAQSWLKAYRQSLARRARRSSRSTWRHHEKEQQRSQCDHNCQYQASKADILFPF-QKLLGAVAAARADKTNLTFTHAVLDRRGQ--------ARARQPLQALAANV-------------RSDDSSKIASQVPAARSRNDSITDIQNENCTLETRRLAMASAIYEVTYMGGSILNFVWDLVMPELNQLKKDALARRK 414
The following BLAST results are available for this feature:
BLAST of NO16G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24076.14.900e-6542.36Rna-dependent RNA polymerase [Nannochloropsis gadi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00640.1NO16G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556734gene_5945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00640.1NO16G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00640 ID=NO16G00640|Name=NO16G00640|organism=Nannochloropsis oceanica|type=gene|length=2576bp
ATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAATCT
TCGTGACTTCCTGCCTTTTCACTGCGgtatgtgcttccccttcttccccc
catcccctccctgtcctgcccccgctgtgtgtgccctgcacggtcgctat
gtcatgatgcaagcccaggcgacgtttcgttgcgtcgagcgagaacgtaa
tgttgagcctagagtgctctgcgtctttcgaggcctgtgatggaccgcgg
gccgacgcgttgcctcctcccaccctccctccctccatttacgcgccgga
cggcgatggctcttgcttacgccatgctccctagccatgacagtgggccg
gcgacaaacgcaccgacaggagcgcagcaatggatggtctgtgtttatct
cccgatgtattttctgggcttgcccggtcaagctgtcacttttagcgtaa
gcaatgccgtcatccatttcttcttacgcttcgatttatgcgcgtacaat
ctggtaaccgccgacattggtggagtgagcgggggagacatgccttgcaa
gtgcttgcacaggaggggattcattttgcttgtcaacgctataaatacat
caaccacaaatcggatagGAATGGGGTGTGTTATTTTGTGGCAGAAGACT
CTACGGgtaaggaagaaacaggatttcgggtcatgtctgcctagtgcatg
attgcgggactgggaaatttcttcaattttccctgtgtcccgcggctggt
ggcgcgggtggcgttggggtttagtcgatcacaatccttgagcttggaac
cgaggcaaatcgagttgattaacgacatatttgcaagcgaggatagtgct
gtcatgacagacggctcgggatttatatcgcccgatcttgtctcacactt
gcccccgcatttataccagGGGCGAGCCCTGCCTGCTGCCCCGCTCATCG
GGCCTTCCCTTGCTGTGCCTCCGTTTGCTGTTATCCAAGTGCGGGTCATA
TGCCACATGGGTGGGTTTAAAGGCACCCTCCTTGTTCACCCACGCCTTCA
AAACAAGATCCAGCTCCGACGTTCTTCCATGCTGAAATTTCCTCCTCCCA
ATCTgtcggttactcctttgactcgtcggcctagcctggacgtgctgaca
acctttcgtgtattgaaagcaagcacccgtctctcccgcgaattggtgct
gatcctgcagGCGCTGGAAGTACCTGACACCGTATTTATCAAACTATTGT
GGTAGCAGTAGTAGCAGCATCAGAAGTGGCTCCAGCGCTATCCCAGCAGC
ACCGTCAGCAGCACCATCATCACCACAACCACCGTGTCCAGGCTCCGAGA
TGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTC
CAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCA
CGGTAAGGCCCACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGC
ATGCAGATCTCCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGAA
ATTGCGGCGAGGGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGTCCTT
GCCTACCGTACTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGTG
GATGGAGCTCATCCTCAGCCTTCTCCGCCTCATTATCCTCCTATCATCGC
GTCTTGAGCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCG
TGTTGCGCCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGCACCA
CCACCAGCAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTACATAC
TCCAGCGGTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTT
GGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCAC
AGTCATGGCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGATGGGACGG
CGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGA
TGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTA
AGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACA
TCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGA
AGAGCGACGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCCACCAAGG
CGGAAGCCACAGTGACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTA
CCAGCCACGACCGTGAAGACAACGACGACGACGACAACGAGCGGCGAAAG
TGGAAACATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGG
CGATCTACGAAGTGACATACATGAGTGGAAGTACCTTGAGCTTCGTATGG
GATACGGTCATGCACGAATTGAATCACGTCAAAAAGACGGCATTGGCAAG
GAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGC
AGGAGCAGTTGCAGGAACAGAGGTAG
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protein sequence of NO16G00640.1

>NO16G00640.1-protein ID=NO16G00640.1-protein|Name=NO16G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MEFQDLGAHCSVGFCNLRDFLPFHCGMGCVILWQKTLRGRALPAAPLIGP
SLAVPPFAVIQVRVICHMGGFKGTLLVHPRLQNKIQLRRSSMLKFPPPNL
RWKYLTPYLSNYCGSSSSSIRSGSSAIPAAPSAAPSSPQPPCPGSEMLTV
VGPFHFNAESVGLQVDAAVMKRCLESCMAHGKAHDIVASASDWWLRHADL
RGACSSNCLILGEIAARALDSAKTGLLWSLPTVLKPAHRPSYLDRSGWSS
SSAFSASLSSYHRVLSYSEVDTLLGRIHARVAPLLADDKSSSSSSTTTSS
SSSMRGGKKNVTYSSGGGNAFISPADTLRLDSDLRVEGSAAFLEQAQSWL
KAYRQSYARRMGRRYHAQQQQRQQQQQQNDDPGEYQALKSEVLAPFKQAF
LATARASGGDKMTSANKRGDEEEGIGAGGEERRPLQLLADNTLPTKAEAT
VTVGDKNNENSRVPATTVKTTTTTTTSGESGNINSRFDRRRLAVASAIYE
VTYMSGSTLSFVWDTVMHELNHVKKTALARREVAEKEIGEAIVAVRQEQL
QEQR*
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Synonyms
Publications