NO16G00640.1, NO16G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00640.1
Unique NameNO16G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1665
Alignment locationchr16:224815..227390 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:224815..227390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00640.1 vs.
Match: EWM24076.1 (Rna-dependent RNA polymerase [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 1.900e-69
Identity = 191/410 (46.59%), Postives = 246/410 (60.00%), Query Frame = 0 
Query:  131 PSAAPSSPQPPCPGSEMLTVVGPFHFNAESVGLQVDAAVMKRCLESCMAHGKAHDIVASASDWWLRHADLRGACSSNCLILGEIAARALDSAKTGLLWSLPTVLKPAHRPSYLDRSGWSSSSAFSASLSSYHRVLSYSEVDTLLGRIHARVAPLLADDKSSSSSSTTTSSSSSMRGGKKNVTYSSGGGNAFISPADTLRLDSDLRVEGSAAFLEQAQSWLKAYRQSYARRMGR--RYHAQQQQRQQQQQQNDDPGEYQALKSEVLAPFKQAFLATARASGGDK----MTSA--NKRGDEEEGIGAGGEERRPLQLLADNTLPTKAEATVTVGDKNNENSRVPATTVKTTTTTTTSGESGNINSRFDRRRLAVASAIYEVTYMSGSTLSFVWDTVMHELNHVKKTALARRE 533
            P    S   PPCPG+E+LT +GPF  + E+VG ++DA VM+RCLESC+A  KA  I+ASASDWW+RHAD+RGA S +C ILGEIA  A++SAKTG LWSLP VL+P H P YL+R  +S+  A S S     R +S    D+ LGR+++RV PL  +        T+   S+S+R        S   GN  ++P D ++LD DLR+EGSAAF E AQSWLKAYRQS ARR  R  R   +  +++QQ+ Q D   +YQA K+++L PF Q  L    A+  DK     T A  ++RG            R+PLQ LA         A V   D +   S+VPA   +  + T    E    N   + RRLA+ASAIYEVTYM GS L+FVWD VM ELN +KK ALARR+
Sbjct:   54 PDIPASKTIPPCPGAELLTQIGPFRLDPETVGHKIDAKVMRRCLESCVAQAKASQILASASDWWIRHADIRGALSRDCRILGEIAVGAVNSAKTGELWSLPRVLRPQHYPPYLNR--YSAVDATSPS-----RPIS---ADSFLGRVYSRVLPLFLE--------TSRQKSASLR--------SDDVGNT-VAPLDPIKLDVDLRIEGSAAFFELAQSWLKAYRQSLARRARRSSRSTWRHHEKEQQRSQCDHNCQYQASKADILFPF-QKLLGAVAAARADKTNLTFTHAVLDRRGQ--------ARARQPLQALA---------ANVRSDDSSKIASQVPAARSRNDSITDIQNE----NCTLETRRLAMASAIYEVTYMGGSILNFVWDLVMPELNQLKKDALARRK 414
The following BLAST results are available for this feature:
BLAST of NO16G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24076.11.900e-6946.59Rna-dependent RNA polymerase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00640NO16G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00640.1NO16G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00640.1.cds1NO16G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00640.1.cds2NO16G00640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00640.1.cds3NO16G00640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00640.1.cds4NO16G00640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00640.1 ID=NO16G00640.1|Name=NO16G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
ATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAATCT
TCGTGACTTCCTGCCTTTTCACTGCGGAATGGGGTGTGTTATTTTGTGGC
AGAAGACTCTACGGGGGCGAGCCCTGCCTGCTGCCCCGCTCATCGGGCCT
TCCCTTGCTGTGCCTCCGTTTGCTGTTATCCAAGTGCGGGTCATATGCCA
CATGGGTGGGTTTAAAGGCACCCTCCTTGTTCACCCACGCCTTCAAAACA
AGATCCAGCTCCGACGTTCTTCCATGCTGAAATTTCCTCCTCCCAATCTG
CGCTGGAAGTACCTGACACCGTATTTATCAAACTATTGTGGTAGCAGTAG
TAGCAGCATCAGAAGTGGCTCCAGCGCTATCCCAGCAGCACCGTCAGCAG
CACCATCATCACCACAACCACCGTGTCCAGGCTCCGAGATGCTGACGGTC
GTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTCCAGGTGGATGC
TGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCACGGTAAGGCCC
ACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGCATGCAGATCTC
CGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGAAATTGCGGCGAG
GGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGTCCTTGCCTACCGTAC
TCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGTGGATGGAGCTCA
TCCTCAGCCTTCTCCGCCTCATTATCCTCCTATCATCGCGTCTTGAGCTA
CTCCGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCGTGTTGCGCCCC
TTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGCACCACCACCAGCAGC
AGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTACATACTCCAGCGGTGG
TGGCAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTTGGACAGTGACT
TGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCACAGTCATGGCTC
AAGGCTTACCGACAGTCGTATGCCCGAAGGATGGGACGGCGGTACCATGC
GCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGATGACCCCGGAG
AGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTAAGCAGGCCTTC
CTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACATCAGCGAACAA
GAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGAAGAGCGACGGC
CCTTGCAGCTTCTGGCGGACAATACACTTCCCACCAAGGCGGAAGCCACA
GTGACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTACCAGCCACGAC
CGTGAAGACAACGACGACGACGACAACGAGCGGCGAAAGTGGAAACATCA
ACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGGCGATCTACGAA
GTGACATACATGAGTGGAAGTACCTTGAGCTTCGTATGGGATACGGTCAT
GCACGAATTGAATCACGTCAAAAAGACGGCATTGGCAAGGAGGGAGGTGG
CGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGCAGGAGCAGTTG
CAGGAACAGAGGTAG
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protein sequence of NO16G00640.1

>NO16G00640.1-protein ID=NO16G00640.1-protein|Name=NO16G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MEFQDLGAHCSVGFCNLRDFLPFHCGMGCVILWQKTLRGRALPAAPLIGP
SLAVPPFAVIQVRVICHMGGFKGTLLVHPRLQNKIQLRRSSMLKFPPPNL
RWKYLTPYLSNYCGSSSSSIRSGSSAIPAAPSAAPSSPQPPCPGSEMLTV
VGPFHFNAESVGLQVDAAVMKRCLESCMAHGKAHDIVASASDWWLRHADL
RGACSSNCLILGEIAARALDSAKTGLLWSLPTVLKPAHRPSYLDRSGWSS
SSAFSASLSSYHRVLSYSEVDTLLGRIHARVAPLLADDKSSSSSSTTTSS
SSSMRGGKKNVTYSSGGGNAFISPADTLRLDSDLRVEGSAAFLEQAQSWL
KAYRQSYARRMGRRYHAQQQQRQQQQQQNDDPGEYQALKSEVLAPFKQAF
LATARASGGDKMTSANKRGDEEEGIGAGGEERRPLQLLADNTLPTKAEAT
VTVGDKNNENSRVPATTVKTTTTTTTSGESGNINSRFDRRRLAVASAIYE
VTYMSGSTLSFVWDTVMHELNHVKKTALARREVAEKEIGEAIVAVRQEQL
QEQR*
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mRNA from alignment at chr16:224815..227390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00640.1 ID=NO16G00640.1|Name=NO16G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr16:224815..227390+ (Nannochloropsis oceanica)
ATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAATCT
TCGTGACTTCCTGCCTTTTCACTGCGGTATGTGCTTCCCCTTCTTCCCCC
CATCCCCTCCCTGTCCTGCCCCCGCTGTGTGTGCCCTGCACGGTCGCTAT
GTCATGATGCAAGCCCAGGCGACGTTTCGTTGCGTCGAGCGAGAACGTAA
TGTTGAGCCTAGAGTGCTCTGCGTCTTTCGAGGCCTGTGATGGACCGCGG
GCCGACGCGTTGCCTCCTCCCACCCTCCCTCCCTCCATTTACGCGCCGGA
CGGCGATGGCTCTTGCTTACGCCATGCTCCCTAGCCATGACAGTGGGCCG
GCGACAAACGCACCGACAGGAGCGCAGCAATGGATGGTCTGTGTTTATCT
CCCGATGTATTTTCTGGGCTTGCCCGGTCAAGCTGTCACTTTTAGCGTAA
GCAATGCCGTCATCCATTTCTTCTTACGCTTCGATTTATGCGCGTACAAT
CTGGTAACCGCCGACATTGGTGGAGTGAGCGGGGGAGACATGCCTTGCAA
GTGCTTGCACAGGAGGGGATTCATTTTGCTTGTCAACGCTATAAATACAT
CAACCACAAATCGGATAGGAATGGGGTGTGTTATTTTGTGGCAGAAGACT
CTACGGGTAAGGAAGAAACAGGATTTCGGGTCATGTCTGCCTAGTGCATG
ATTGCGGGACTGGGAAATTTCTTCAATTTTCCCTGTGTCCCGCGGCTGGT
GGCGCGGGTGGCGTTGGGGTTTAGTCGATCACAATCCTTGAGCTTGGAAC
CGAGGCAAATCGAGTTGATTAACGACATATTTGCAAGCGAGGATAGTGCT
GTCATGACAGACGGCTCGGGATTTATATCGCCCGATCTTGTCTCACACTT
GCCCCCGCATTTATACCAGGGGCGAGCCCTGCCTGCTGCCCCGCTCATCG
GGCCTTCCCTTGCTGTGCCTCCGTTTGCTGTTATCCAAGTGCGGGTCATA
TGCCACATGGGTGGGTTTAAAGGCACCCTCCTTGTTCACCCACGCCTTCA
AAACAAGATCCAGCTCCGACGTTCTTCCATGCTGAAATTTCCTCCTCCCA
ATCTGTCGGTTACTCCTTTGACTCGTCGGCCTAGCCTGGACGTGCTGACA
ACCTTTCGTGTATTGAAAGCAAGCACCCGTCTCTCCCGCGAATTGGTGCT
GATCCTGCAGGCGCTGGAAGTACCTGACACCGTATTTATCAAACTATTGT
GGTAGCAGTAGTAGCAGCATCAGAAGTGGCTCCAGCGCTATCCCAGCAGC
ACCGTCAGCAGCACCATCATCACCACAACCACCGTGTCCAGGCTCCGAGA
TGCTGACGGTCGTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTC
CAGGTGGATGCTGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCA
CGGTAAGGCCCACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGC
ATGCAGATCTCCGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGAA
ATTGCGGCGAGGGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGTCCTT
GCCTACCGTACTCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGTG
GATGGAGCTCATCCTCAGCCTTCTCCGCCTCATTATCCTCCTATCATCGC
GTCTTGAGCTACTCCGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCG
TGTTGCGCCCCTTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGCACCA
CCACCAGCAGCAGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTACATAC
TCCAGCGGTGGTGGCAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTT
GGACAGTGACTTGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCAC
AGTCATGGCTCAAGGCTTACCGACAGTCGTATGCCCGAAGGATGGGACGG
CGGTACCATGCGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGA
TGACCCCGGAGAGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTA
AGCAGGCCTTCCTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACA
TCAGCGAACAAGAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGA
AGAGCGACGGCCCTTGCAGCTTCTGGCGGACAATACACTTCCCACCAAGG
CGGAAGCCACAGTGACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTA
CCAGCCACGACCGTGAAGACAACGACGACGACGACAACGAGCGGCGAAAG
TGGAAACATCAACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGG
CGATCTACGAAGTGACATACATGAGTGGAAGTACCTTGAGCTTCGTATGG
GATACGGTCATGCACGAATTGAATCACGTCAAAAAGACGGCATTGGCAAG
GAGGGAGGTGGCGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGC
AGGAGCAGTTGCAGGAACAGAGGTAG
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Coding sequence (CDS) from alignment at chr16:224815..227390+

>NO16G00640.1 ID=NO16G00640.1|Name=NO16G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr16:224815..227390+ (Nannochloropsis oceanica)
ATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTGCAATCT
TCGTGACTTCCTGCCTTTTCACTGCGGAATGGGGTGTGTTATTTTGTGGC
AGAAGACTCTACGGGGGCGAGCCCTGCCTGCTGCCCCGCTCATCGGGCCT
TCCCTTGCTGTGCCTCCGTTTGCTGTTATCCAAGTGCGGGTCATATGCCA
CATGGGTGGGTTTAAAGGCACCCTCCTTGTTCACCCACGCCTTCAAAACA
AGATCCAGCTCCGACGTTCTTCCATGCTGAAATTTCCTCCTCCCAATCTG
CGCTGGAAGTACCTGACACCGTATTTATCAAACTATTGTGGTAGCAGTAG
TAGCAGCATCAGAAGTGGCTCCAGCGCTATCCCAGCAGCACCGTCAGCAG
CACCATCATCACCACAACCACCGTGTCCAGGCTCCGAGATGCTGACGGTC
GTTGGGCCTTTCCATTTCAATGCCGAGTCGGTCGGCCTCCAGGTGGATGC
TGCGGTCATGAAACGGTGCTTGGAGAGCTGCATGGCGCACGGTAAGGCCC
ACGATATCGTCGCCAGTGCCAGTGATTGGTGGTTGAGGCATGCAGATCTC
CGTGGGGCCTGCTCGTCGAATTGCTTGATTCTGGGAGAAATTGCGGCGAG
GGCGCTTGATAGTGCCAAGACGGGGCTGCTGTGGTCCTTGCCTACCGTAC
TCAAGCCTGCTCATCGCCCAAGTTATCTGGACCGAAGTGGATGGAGCTCA
TCCTCAGCCTTCTCCGCCTCATTATCCTCCTATCATCGCGTCTTGAGCTA
CTCCGAAGTCGACACGCTGCTTGGCCGCATCCATGCCCGTGTTGCGCCCC
TTTTGGCGGACGACAAGAGCAGTAGCAGCAGCAGCACCACCACCAGCAGC
AGTAGTAGTATGAGAGGTGGCAAAAAGAATGTTACATACTCCAGCGGTGG
TGGCAACGCCTTCATTTCTCCAGCAGATACTCTTCGTTTGGACAGTGACT
TGAGGGTAGAGGGCTCGGCGGCCTTTCTCGAGCAAGCACAGTCATGGCTC
AAGGCTTACCGACAGTCGTATGCCCGAAGGATGGGACGGCGGTACCATGC
GCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAAAATGATGACCCCGGAG
AGTATCAGGCTCTCAAGTCGGAGGTGCTGGCGCCTTTTAAGCAGGCCTTC
CTTGCCACAGCTAGAGCAAGTGGAGGGGACAAGATGACATCAGCGAACAA
GAGAGGAGATGAAGAAGAAGGAATTGGGGCAGGAGGAGAAGAGCGACGGC
CCTTGCAGCTTCTGGCGGACAATACACTTCCCACCAAGGCGGAAGCCACA
GTGACAGTAGGTGATAAAAATAACGAAAATAGCAGAGTACCAGCCACGAC
CGTGAAGACAACGACGACGACGACAACGAGCGGCGAAAGTGGAAACATCA
ACAGCAGATTTGACAGGCGGCGCTTGGCTGTGGCCTCGGCGATCTACGAA
GTGACATACATGAGTGGAAGTACCTTGAGCTTCGTATGGGATACGGTCAT
GCACGAATTGAATCACGTCAAAAAGACGGCATTGGCAAGGAGGGAGGTGG
CGGAAAAGGAGATTGGAGAAGCGATCGTTGCGGTGAGGCAGGAGCAGTTG
CAGGAACAGAGGTAG
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Synonyms
Publications